other hairpins
novel_multiarm_DicerNOK_bulgeHIGH (23 loci)
sblock578 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.35/0.61 | 18/22/0.75 | 0.0 0.0 1.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 0 6 0 | 7 3 11 | 5arm 3arm 3arm | 9 9 9 | nd nd nd | 0.30 0.50 0.32 | 4 4 4 | 4 | 3 | -9 | -7 |
| reads | miRBase family seed | ||||
| seed | -GCAAUGG------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------AGCUACA---------- | 1 | novel | ||
| seed | ------------------------------------GAAGUAA-------------------- | 1 | novel | ||
| seed | --------------------------------------------UCAGCUA------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| TGCAATGGTACTGTAATTGA------------------------------------------- | 20 | - | 1 | - | |
| -----------------------------------AGAAGTAATTCAGCTACAGGGT------ | 22 | 1 | - | - | |
| ---------------------------------------------CAGCTACAGGGTGACCAG | 18 | - | - | 1 | |
| -------------------------------------------TTCAGCTACAGGGTGACCAG | 20 | 1 | - | - | |
| rat | TGCAATGGTACTGTAATTGAgcatccagaatatggAGAAGTAATTCAGCTACAGGGTGACCAG | ||||
| *************************************************************** | |||||
| rat | .....((((.(((((.((((((.((((.....))))...))...)))).)))))....)))). | 0.680 -16.80 | |||
| rat | chromosome:1:94340089:94340151:-1 | intergenic |
sblock6054 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.158 | no | no | 0.65/0.86 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 15 22 | 2 8 | 5arm 3arm | 1 2 | nd nd | 0.23 0.30 | 4 3 | 2 | 2 | 1 | -3 |
| reads | miRBase family seed | |||
| seed | ----------------CCCGCCC---------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GGCGUGA---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S2 | |||
| ---------------------------------------------------AGGCGTGAGCAAGCTGGGAC---------------------- | 20 | 1 | - | |
| ---------------CCCCGCCCCTTGCCCACGCCCC-------------------------------------------------------- | 22 | - | 1 | |
| rat | gttagaaagtcctcgCCCCGCCCCTTGCCCACGCCCCgctccggcacttggAGGCGTGAGCAAGCTGGGACccagcgctgggcgccaattaac | |||
| ********************************************************************************************* | ||||
| ....................................................................................................>>> | ENSRNOT00000059442 ENSRNOG00000038892 LOC686123 | |||
| rat | (((((...((((.(((....((((((((.((((((((((....))....)).)))))).)))))..))).....)))..)))).....))))) | 0.430 -36.10 | ||
| rat | chromosome:2:88589706:88589798:-1 | intergenic ## {SimpF: 1 Eponine} |
sblock6677 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.643 | no | no | 0.54/0.55 | 22/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 26 1 | 2 14 | 5arm 3arm | 1 1 | nd nd | 0.45 0.25 | 6 4 | 2 | 1 | 18 | 21 |
| reads | miRBase family seed | ||
| seed | ---------------------------AGAAGUC------------------------------------------------------------ | 1 | novel |
| seed | ----------------------------------------------------------------------CCUUGCA----------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------------TCCTTGCATTCGGGACCAAAGAGG- | 24 | 1 | |
| --------------------------GAGAAGTCTGTGTGAGGCTGAG---------------------------------------------- | 22 | 1 | |
| rat | gccttccaaataagttaaccagtcaaGAGAAGTCTGTGTGAGGCTGAGccggtgaggaacagcctggccTCCTTGCATTCGGGACCAAAGAGGc | ||
| ********************************************************************************************** | |||
| rat | (((((........(((..(((((((((.((.(((......((((((..((.....))..))))))))).)))))).))).)))))....))))) | 0.540 -24.90 |
| rat | chromosome:20:5497821:5497914:-1 | intergenic |
sblock691 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.244 | no | no | 0.38/0.53 | 18/24/0.71 | 0.0 0.0 0.0 | 0.0 1.5 0.0 | 1 2 4 | 0 0 0 | 1 1 1 | 0 0 0 | 7 25 12 | 25 5 14 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.42 0.22 0.29 | 5 4 3 | 7 | 1 | 3 | 5 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------CCUCAGU---------------------------- | 4 | novel |
| seed | --------------------------AAACGUG------------------------------------------------------------------------ | 2 | novel |
| seed | --------GUGCCCA------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------------CCCTCAGTCAGCATCTAGAGCTTT------------ | 24 | 4 | |
| -------------------------TAAACGTGTTGCTGATAC-------------------------------------------------------------- | 18 | 1 | |
| -------TGTGCCCAGAGACTCCAAT------------------------------------------------------------------------------- | 19 | 1 | |
| -------------------------TAAACGTGTTGCTGATACTGT----------------------------------------------------------- | 21 | 1 | |
| rat | agaaatctgtgcccagagactccaataaacgtgttgctgatactgtatggccagtgccaaacccagtgaCCCTCAGTCAGCATCTAGAGCTTTaggaccgagtct | ||
| ********************************************************************************************************* | |||
| rat | (((..((.((.((.((((.(((........(((((((((((((((..((((....))))....)))))....)))).))))))...))))))).)))).)).))) | 0.450 -26.10 |
| rat | chromosome:1:128255976:128256080:-1 | intergenic |
sblock7650 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.427 | no | no | 0.33/0.50 | 21/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 13 17 6 | 8 3 14 | 5arm 3arm 3arm | 5 5 5 | nd nd nd | 0.24 0.32 0.27 | 4 4 2 | 4 | 1 | 3 | 5 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------CAGUACA-------------------- | 2 | novel |
| seed | --------------GGGUUUU---------------------------------------------------------------------- | 1 | novel |
| seed | -----------------------------------------------------GCAAACC------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------TCAGTACAGTGAATCTTTGGAG------ | 22 | 2 | |
| -------------TGGGTTTTTCATGTTTGATGT--------------------------------------------------------- | 21 | 1 | |
| ----------------------------------------------------TGCAAACCTGCTCAGTACAGTG----------------- | 22 | 1 | |
| rat | actggtcacacctTGGGTTTTTCATGTTTGATGTttgtgaagatgaatactcTGCAAACCTGCTCAGTACAGTGAATCTTTGGAGctggtg | ||
| ******************************************************************************************* | |||
| rat | ((..((....((..((((((....(((((((.((((((..((.......))..))))))....)))).)))..))))))..)).))..)). | 0.890 -20.70 |
| rat | chromosome:3:140679545:140679635:-1 | intergenic |
sblock8551 [novel_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.50/0.53 | 19/20/0.80 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 28 23 9 | 11 14 29 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.40 0.30 0.37 | 5 4 3 | 5 | 1 | 6 | 10 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------GCACACC----------------------------------- | 3 | novel |
| seed | ---------------------------------------------------------------------------------------------AAGAUCU-------------------- | 1 | novel |
| seed | -----------------------------GAUCAAU------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------TGCACACCTAGGGTTCAAGA----------------------- | 20 | 3 | |
| ----------------------------TGATCAATGCTGCAGGCTTC------------------------------------------------------------------------ | 20 | 1 | |
| --------------------------------------------------------------------------------------------CAAGATCTCCAGGGTGAAG--------- | 19 | 1 | |
| rat | ggcgggagcagtggctctgggatggcccTGATCAATGCTGCAGGCTTCtcaggcccagaatcctctattgagaactcTGCACACCTAGGGTTCAAGATCTCCAGGGTGAAGccctggcct | ||
| ************************************************************************************************************************ | |||
| rat | (((.((.((....(((((((((((((((((.....((.(((((..(((((((....(((....))).)))))))..)))))))..)))))))....))).)))))))...)).)).))). | 0.940 -46.70 |
| rat | chromosome:4:122190026:122190145:-1 | intergenic |
novel_shortStem_5varHIGH (23 loci)
block71234 [novel_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.187 | no | no | 0.57/0.67 | 18/24/0.75 | 6.4 | 6.1 | 8 | 0 | 3 | 0 | 0 | 17 | 5arm | 1 | nd | 0.29 | 3 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------UCUCGCA--------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -UCUGUCC------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------CUGGCAU----------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----UCCACUG--------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------GCACCCC----------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------GCAUCUC-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------GGCAUCU--------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ----------------CTCTCGCACCCCATCTGCCCAA------------------------------------------------------------------------- | 22 | - | 2 | - | |
| CTCTGTCCACTGGCATCTCTC------------------------------------------------------------------------------------------ | 21 | - | 1 | - | |
| ----------TGGCATCTCTCGCACCCC----------------------------------------------------------------------------------- | 18 | - | - | 1 | |
| -----------GGCATCTCTCGCACCCCATCTG------------------------------------------------------------------------------ | 22 | 1 | - | - | |
| --------------------CGCACCCCATCTGCCCAA------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ----GTCCACTGGCATCTCTCGCACCCC----------------------------------------------------------------------------------- | 24 | - | 1 | - | |
| --------ACTGGCATCTCTCGCACCCCATC-------------------------------------------------------------------------------- | 23 | 1 | - | - | |
| rat | CTCTGTCCACTGGCATCTCTCGCACCCCATCTGCCCAAtaaacgtctttctgcagcagttctgcctacttgaaattttctcaatggtgggaggtggagattggagatggag | ||||
| *************************************************************************************************************** | |||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041563 ENSRNOG00000010370 NP_001102296.1 | ||||
| rat | (((((((..((...(((((.(((..((((((........(((..((.....((((.....))))......))..))).......))))))..)))))))).)).))))))) | 0.510 -30.26 | |||
| rat | chromosome:10:40319326:40319436:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048600|ENSRNOG00000010370 ## Opposite_strand|Intronic_coding|ENSRNOT00000041563|ENSRNOG00000010370 ## ENSRNOG00000010370|protein_coding|NP_001102296.1|TNFAIP3 interacting protein 1 [Source:RefSeq_peptide;Acc:NP_001102296] |
block118132 [novel_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.031 | no | no | 0.50/0.53 | 19/22/0.75 | 1.5 | 0.2 | 4 | 0 | 3 | 0 | 1 | 5 | 3arm | 1 | nd | 0.14 | 2 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------UCUCUCU---------------- | 2 | novel | ||
| seed | -------------------------------------------------UCUUGCA------------ | 1 | novel | ||
| seed | -----------------------------------------------UCUCUUG-------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S2 | T5S2 | |||
| --------------------------------------------CTCTCTCTTGCAAAGGAACCTC-- | 22 | - | - | 2 | |
| ----------------------------------------------CTCTCTTGCAAAGGAACCTC-- | 20 | - | 1 | - | |
| ------------------------------------------------CTCTTGCAAAGGAACCTCC- | 19 | 1 | - | - | |
| rat | ggaggagctttataaactgtggctggagaaaggatccttgttctCTCTCTCTTGCAAAGGAACCTCCa | ||||
| ******************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000002714 ENSRNOG00000001979 Dscr1 | ||||
| rat | (((((..((((......(((((..(((((.(((((....))))).))))).)))))))))..))))). | 0.790 -20.00 | |||
| rat | chromosome:11:32408851:32408918:-1 | Same_strand|Intronic_coding|ENSRNOT00000002714|ENSRNOG00000001979 ## Same_strand|Boundary_non-coding|ENSRNOT00000002715|ENSRNOG00000001979 ## ENSRNOG00000001979|protein_coding|Dscr1|Calcipressin-1 (Regulator of calcineurin 1) (Down syndrome critical region protein 1 homolog) (Myocyte-enriched calcineurin-interacting protein 1) (MCIP1). [Source:UniProtKB/Swiss-Prot;Acc:Q6IN33] |
block233553 [novel_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.172 | no | no | 0.65/0.68 | 20/22/1.00 | 1.7 | 2.7 | 3 | 0 | 3 | 0 | 1 | 3 | 5arm | 2 | 19 | 0.23 | 2 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --GCCCUUC------------------------------------------------------------------ | 2 | novel | ||
| seed | -------UCACCCC------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S2 | T5S1 | T5S2 | |||
| -TGCCCTTCACCCCTCCTCAC------------------------------------------------------ | 20 | 1 | - | - | |
| ------TTCACCCCTCCTCACCCGGTC------------------------------------------------ | 21 | - | - | 1 | |
| -TGCCCTTCACCCCTCCTCACCC---------------------------------------------------- | 22 | - | 1 | - | |
| rat | cTGCCCTTCACCCCTCCTCACCCGGTCcaccctttgctgtctccaggaagaggcggtggagaagcacatcgcaga | ||||
| *************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | ((((.((((.((((.((((..((((...((........))..)).))..)))).)).)).))))......)))). | 0.430 -22.10 | |||
| rat | chromosome:12:43046273:43046347:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block346032 [novel_shortStem_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.287 | no | no | 0.32/0.39 | 19/24/0.75 | 1.8 | 0.8 | 4 | 0 | 2 | 0 | 2 | 17 | 5arm | 8 | nd | 0.30 | 3 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---GUGUCUG--------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ----------AACUAAU-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| --TGTGTCTGAACTAATTTGTCCAGT----------------------------------------------------------------------------- | 24 | - | 2 | |
| ---------GAACTAATTTGTCCAGTAA--------------------------------------------------------------------------- | 19 | 1 | - | |
| --TGTGTCTGAACTAATTTGTCCAG------------------------------------------------------------------------------ | 23 | - | 1 | |
| rat | ctTGTGTCTGAACTAATTTGTCCAGTAAtaaaatttagaacctttcaaactgaaaaaaaaaaaaaaaaagaaggaagatggctgtcaaaatgggtcagcaagg | |||
| ******************************************************************************************************* | ||||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000002809 ENSRNOG00000002050 Igfbp7 | |||
| ----------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059927 ENSRNOG00000002050 Igfbp7 | |||
| rat | ((((...((((.(((.((((..((((......((((....(((((........................))))).)))).)))).)))).))).)))))))). | 0.620 -14.46 | ||
| rat | chromosome:14:33030801:33030903:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000059927|ENSRNOG00000002050 ## ENSRNOG00000002050|protein_coding|Igfbp7|insulin-like growth factor binding protein 7 [Source:RefSeq_peptide;Acc:NP_001013066] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30803 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.