other hairpins
novel_lenNOK_mirtron_bulgeHIGH (22 loci)
block2183777 [novel_lenNOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.68/0.68 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 11 | 4 | 3arm | 1 | 3 | 0.26 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------CUGACCA---------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -------------------------------------------CCTGACCAGGCGTCTCCTG----------- | 19 | 1 | |
| rat | cagtggagggggtagggggcatagggtggggcagggaggccttCCTGACCAGGCGTCTCCTGtaggttcagtg | ||
| ************************************************************************* | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000029335 ENSRNOG00000013987 NP_001101538.1 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>> | ENSRNOT00000048508 ENSRNOG00000013987 NP_001101538.1 | ||
| rat | ((.((((....(((((((((....(((.(((.(((....))).))).)))....)))))))))...)))).)) | 1.000 -27.30 |
| rat | chromosome:7:11151534:11151606:1 | Same_strand|Intronic_coding|ENSRNOT00000029335|ENSRNOG00000013987 ## ENSRNOG00000013987|protein_coding|NP_001101538.1|strawberry notch homolog [Source:RefSeq_peptide;Acc:NP_001101538] |
block2596413 [novel_lenNOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.093 | no | no | 0.33/0.33 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 15 | 5arm | 1 | 3 | 0.22 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------GGUUUUG--------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ------GGGTTTTGTTTACTCTTT----------------------------------------------------------------------------- | 18 | 1 | |
| rat | tgttttGGGTTTTGTTTACTCTTTtaggtctggtgtggaagttctgtttaatgagctagagattcccgtggaagagtactccttcggtagatccaagatat | ||
| ***************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000051190 ENSRNOG00000015227 Myo1b | ||
| ++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000034652 ENSRNOG00000015227 Myo1b | ||
| ++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000045723 ENSRNOG00000015227 Myo1b | ||
| rat | ((((((((((((....((((((((((((((((((.((((.......))))....)))))).....)).))))))))))..........)))))))))))). | 0.470 -24.64 |
| rat | chromosome:9:46895262:46895362:1 | Same_strand|Intronic_coding|ENSRNOT00000034652|ENSRNOG00000015227 ## ENSRNOG00000015227|protein_coding|Myo1b|Myosin-Ib (Myosin I alpha) (MMI-alpha) (MMIa) (Myosin heavy chain myr 1). [Source:UniProtKB/Swiss-Prot;Acc:Q05096] |
block819477 [novel_lenNOK_mirtron_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.55/0.61 | 18/22/0.50 | 0.0 | 1.4 | 8 | 0 | 2 | 0 | 16 | 9 | 3arm | 1 | 1 | 0.29 | 4 | 8 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------------CACUCAA------------------------------ | 8 | novel | |
| len | cloning frequencies | |||
| T1S1 | T1S2 | |||
| -----------------------------------------------------------TCACTCAACTGCCTGCCCTGT----------------- | 21 | 1 | 2 | |
| -----------------------------------------------------------TCACTCAACTGCCTGCCCT------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TCACTCAACTGCCTGCCC-------------------- | 18 | 1 | 1 | |
| -----------------------------------------------------------TCACTCAACTGCCTGCCCTGTA---------------- | 22 | - | 1 | |
| rat | ttggggaggggtgtgtgcaggagaaggtgggcgtgaccagtcctagctctgcaagctggTCACTCAACTGCCTGCCCTGTAggtgtcccgttgcagc | |||
| ************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000000281 ENSRNOG00000000264 Def8 | |||
| rat | (((.((.(((..((.((((((...((((((..(((((((((....((...))..)))))))))....))))))..)))))).))..))).)).))). | 1.000 -40.80 | ||
| rat | chromosome:19:53773951:53774047:1 | Same_strand|Intronic_coding|ENSRNOT00000000281|ENSRNOG00000000264 ## ENSRNOG00000000264|protein_coding|Def8|differentially expressed in FDCP 8 [Source:RefSeq_peptide;Acc:NP_001019945] |
novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (22 loci)
sblock10368 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.47/0.64 | 19/22/0.12 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 1 1 1 4 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 6 25 36 28 | 27 8 -8 3 | 5arm 5arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.58 0.45 0.42 | 3 6 7 5 | 8 | 2 | 0 | -1 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------GCAUGGU--------------------------------------- | 5 | novel | |
| seed | -----------------------------------------------------------CUCACUC-------------------------------------------------- | 1 | novel | |
| seed | --------------------------GCCCUUU----------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------CCCAGCA------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ---------------------------------------------------------------------TGCATGGTCCCGATGAAAC---------------------------- | 19 | 1 | 4 | |
| ------TCCCAGCATGACGTGACTC------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------TCTCACTCCCCTGCATGGTCCC------------------------------------ | 22 | 1 | - | |
| -------------------------TGCCCTTTGGTACCTTCTA------------------------------------------------------------------------ | 19 | - | 1 | |
| rat | ggcccttcccagcatgacgtgactctgccctttggtaccttctatggcagggaacttttctcactccccTGCATGGTCCCGATGAAACggagtacaaacctctgctttagaggcca | |||
| ******************************************************************************************************************** | ||||
| rat | ((((((....((((.((.((.((((((....((((.(((.......((((((..............))))))..))).)))).....))))))....)).))))))..)).)))). | 1.000 -39.94 | ||
| rat | chromosome:6:122582374:122582489:1 | intergenic |
sblock10388 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.42 | 19/20/0.17 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 2 3 | 0 0 0 | 1 2 1 | 0 0 0 | 13 21 19 | 18 11 12 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.50 0.32 0.42 | 10 3 3 | 6 | 3 | 1 | -1 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------CUCUGGA------------------------------ | 3 | novel | ||
| seed | ----------------------ACGAUGA---------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------CCUAGCU------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| -------------------------------------------------------------------TCTCTGGAATATCAATCAA------------------- | 19 | - | - | 3 | |
| ---------------------TACGATGATTTCCACTCAG----------------------------------------------------------------- | 19 | 1 | 1 | - | |
| -------------TCCTAGCTTACGATGATTTC------------------------------------------------------------------------ | 20 | - | - | 1 | |
| rat | ggaaaatgttgtcTCCTAGCTTACGATGATTTCCACTCAGcctcaggaggtcaccacctcttgtcccTCTCTGGAATATCAATCAAtataatcaccacattttct | ||||
| ********************************************************************************************************* | |||||
| ------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000005175 ENSRNOG00000003813 Kcnk10 | ||||
| rat | (((((((((.((............(((((((((((...((...((((((((....))))))))...))...))))).)))).)).........)).))))))))) | 0.630 -25.50 | |||
| rat | chromosome:6:122609844:122609948:1 | Opposite_strand|Intronic_coding|ENSRNOT00000005175|ENSRNOG00000003813 ## ENSRNOG00000003813|protein_coding|Kcnk10|Potassium channel subfamily K member 10 (Outward rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit). [Source:UniProtKB/Swiss-Prot;Acc:Q9JIS4] |
sblock12785 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.39/0.40 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 0 | 19 38 | 5arm 3arm | 1 1 | nd nd | 0.39 0.42 | 3 4 | 2 | 1 | 0 | -18 |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------------------AGGAAUU------------ | 1 | novel |
| seed | -----------------UCAACAA--------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------ATCAACAATAACAGTGGC----------------------------------------------------------------------------------- | 18 | 1 | |
| -------------------------------------------------------------------------------------------------AAGGAATTCAGATCAGCCAA | 20 | 1 | |
| rat | ggccctgctttcctgtATCAACAATAACAGTGGCcaaattgatggtaatttgatatactttgaactattagtttctccatttttactgtattccaccAAGGAATTCAGATCAGCCAA | ||
| ********************************************************************************************************************* | |||
| ------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000025677 ENSRNOG00000018951 Col4a5_predicted | ||
| rat | (((.(((..(((((......(((.(((.(((((..(((((((((((...((((......)))))))))))))))..))))).))).))).........)))))..)))....))).. | 0.910 -27.36 |
| rat | chromosome:X:36962014:36962130:1 | Opposite_strand|Intronic_coding|ENSRNOT00000025677|ENSRNOG00000018951 ## ENSRNOG00000018951|protein_coding|Col4a5_predicted| |
sblock1288 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.50/0.50 | 18/20/0.50 | 0.7 0.0 | 0.0 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 25 9 | 6 11 | 5arm 3arm | 5 5 | nd nd | 0.35 0.40 | 3 5 | 4 | 2 | 7 | 5 |
| reads | miRBase family seed | |||
| seed | ----------------------------AGCUGGA-------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------GUAGCUG---------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------CCUCCAA--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------TAGCTGGACGTACACTGT---------------------------------------------------- | 18 | - | 2 | |
| --------------------------------------------------------------------ACCTCCAATGTTGCAGGACA--------- | 20 | 1 | - | |
| -------------------------TGTAGCTGGACGTACACTGT---------------------------------------------------- | 20 | - | 1 | |
| rat | ntnnnnnngnnnnnnggatatccncTGTAGCTGGACGTACACTGTtncagtnnnnnaactgtnnnaggACCTCCAATGTTGCAGGACAtggaccctn | |||
| ************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | |||
| rat | ...............((...(((.(((((((((((.((...((....((((......))))....)).)).))))..))))))).....))).)).. | 0.970 -18.80 | ||
| rat | chromosome:1:47847458:47847554:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock2370 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.28/0.56 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 5 | 34 31 | 5arm 3arm | 1 1 | nd nd | 0.33 0.33 | 3 4 | 2 | 2 | 5 | 4 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------------CCCUUCU--------------- | 1 | novel | |
| seed | -----------CAUCUGG------------------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S1 | |||
| -------------------------------------------------------------------------------------------------GCCCTTCTAGGTGCTGTT----- | 18 | 1 | - | |
| ----------ACATCTGGATATCATATT-------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | gtgccacataACATCTGGATATCATATTgcccatggcctcacttgggcccagccctgggcacacatgtgtctccgcccaggtggggccttcagacttGCCCTTCTAGGTGCTGTTtgtca | |||
| ************************************************************************************************************************ | ||||
| rat | .((.((.(((.((((((((...((..((......((((((((((((((........((((((....))))))..))))))))))))))....))..))....)))))))).))).)).)) | 0.570 -45.70 | ||
| rat | chromosome:10:45953784:45953903:-1 | intergenic |
sblock2439 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.50/0.56 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 22 | 5 22 | 5arm 3arm | 1 1 | nd nd | 0.32 0.39 | 3 2 | 2 | 2 | 21 | 17 |
| reads | miRBase family seed | |||
| seed | -----------------------------AGGGAUA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------UGUGUGC-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| ----------------------------GAGGGATATTCTCTCAGCCTGA---------------------------------------------------------------------- | 22 | - | 1 | |
| --------------------------------------------------------------------------------TTGTGTGCAGTGCCTCTG---------------------- | 18 | 1 | - | |
| rat | ttcccaggtgaccagggtcctgaccaagGAGGGATATTCTCTCAGCCTGAttcagctcctgaacatatgtggatgtccctTTGTGTGCAGTGCCTCTGggtacccagctagcactgggac | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004609 ENSRNOG00000003276 Myo1d | |||
| rat | .(((((((((.((((((..(((..((..(((((((((((...((...((.(((((...)))))))..)).)))))))))))..))..)))..)).)))).))))..........))))). | 0.460 -48.60 | ||
| rat | chromosome:10:68728708:68728827:-1 | Same_strand|Intronic_coding|ENSRNOT00000004609|ENSRNOG00000003276 ## Same_strand|Boundary_non-coding|ENSRNOT00000044178|ENSRNOG00000003276 ## ENSRNOG00000003276|protein_coding|Myo1d|Myosin-Id (Myosin heavy chain myr 4). [Source:UniProtKB/Swiss-Prot;Acc:Q63357] |
sblock2826 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.43/0.63 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 5 | 14 21 | 5arm 3arm | 1 1 | nd nd | 0.48 0.32 | 7 3 | 2 | 2 | 0 | 7 |
| reads | miRBase family seed | |||
| seed | -------------ACCUUCA---------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------GGUAGGG---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ------------------------------------------------------------------------GGGTAGGGGTGGGATAAGG----- | 19 | - | 1 | |
| ------------TACCTTCAGTCTCTGAAAGTG--------------------------------------------------------------- | 21 | 1 | - | |
| rat | gcaccttaatgcTACCTTCAGTCTCTGAAAGTGgcctgggtcgggctggcaagcctgggatgagtggataggGGGTAGGGGTGGGATAAGGaggtg | |||
| ************************************************************************************************ | ||||
| rat | .((((((.((.(((((.((..(((((.......((.((..(((((((....)))))))..)).)).....)))))..))))))).))...)))))) | 0.460 -31.20 | ||
| rat | chromosome:10:91500599:91500694:1 | intergenic |
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