other hairpins
novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH (22 loci)
sblock8272 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.44/0.58 | 18/19/0.00 | 0.0 0.5 | 0.0 1.0 | 2 2 | 0 0 | 1 2 | 0 0 | 25 10 | 9 21 | 5arm 3arm | 1 1 | nd nd | 0.47 0.33 | 4 3 | 4 | 3 | 17 | 17 |
| reads | miRBase family seed | ||||
| seed | --------------------------CGCUGUC--------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------------------------UUCCUUG--------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------------AUUCCUU---------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S1 | T3S2 | |||
| -------------------------ACGCTGTCTCCAGGGCAAA---------------------------------------------------------------- | 19 | - | - | 2 | |
| -------------------------------------------------------------------------------ATTCCTTGCTGAGTGGATC---------- | 19 | - | 1 | - | |
| ------------------------------------------------------------------------------AATTCCTTGCTGAGTGGA------------ | 18 | 1 | - | - | |
| rat | gatatgcaccaaatctcgcgaggctACGCTGTCTCCAGGGCAAAgacagttggtgcactgactgtcaatctttggaagAATTCCTTGCTGAGTGGATCtttgctgtca | ||||
| ************************************************************************************************************ | |||||
| rat | ((((.((((((...(((((((((.....((...(((((((....(((((((((....)))))))))...)))))))))....)))))).)))))).....))))))). | 0.990 -36.90 | |||
| rat | chromosome:3:146587914:146588021:1 | intergenic |
sblock9463 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.33/0.50 | 18/22/0.50 | 0.5 0.0 0.0 | 0.5 0.0 0.0 | 4 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 9 29 30 | 20 0 -2 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.44 0.32 0.41 | 4 3 4 | 6 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ------------AGCACUU------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ------------------------------CGUGCCA------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------GCGAGUG-------------------------------------------- | 1 | novel | |
| seed | ----------UUAGCAC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -----------TAGCACTTTTCTGCAATT--------------------------------------------------------------------------- | 18 | 1 | 2 | |
| ----------------------------------------------------TGCGAGTGACCTATTTGAGGAC------------------------------ | 22 | - | 1 | |
| ---------TTTAGCACTTTTCTGCAATTCC------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------CCGTGCCATTGTATGTCACTTG----------------------------------------------------- | 22 | - | 1 | |
| rat | tcagtgtctTTTAGCACTTTTCTGCAATTCCGTGCCATTGTATGTCACTTGaTGCGAGTGACCTATTTGAGGACttttgggaatgttataagggggacactgat | |||
| ******************************************************************************************************** | ||||
| rat | ((((((((((......((((...(((.(((((..((...(((.((((((((...)))))))).)))....)).....))))).)))...)))))))))))))). | 0.740 -32.90 | ||
| rat | chromosome:5:114566266:114566369:-1 | intergenic |
sblock9549 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 16 12 | 22 29 | 5arm 3arm | 1 1 | nd nd | 0.32 0.63 | 3 6 | 2 | 1 | 7 | 5 |
| reads | miRBase family seed | ||
| seed | -----------------ACAGACA------------------------------------------------------------------------------------------------ | 1 | novel |
| seed | ------------------------------------------------------------------------------------------AGACAUG----------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------------------------------------------------------------TAGACATGTGTGTAAAATG------------ | 19 | 1 | |
| ----------------GACAGACAGAGAGGTATAC------------------------------------------------------------------------------------- | 19 | 1 | |
| rat | gtccctgagctggagaGACAGACAGAGAGGTATACaggtgttttcccgtggcctaggcagccagagcaggcgggacatgcgtgtgtgttTAGACATGTGTGTAAAATGcagggcagggaa | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018316 ENSRNOG00000013515 P70643_RAT | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036148 ENSRNOG00000013515 P70643_RAT | ||
| rat | .((((((..(((.....(((.(((...((..(((((.((((..((((((.((((.((...)))).))..)))))).)))).)))))..)).....))).)))......)))..)))))). | 0.790 -43.50 |
| rat | chromosome:5:150690901:150691020:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000056220|ENSRNOG00000013515 ## Same_strand|Intronic_coding|ENSRNOT00000018316|ENSRNOG00000013515 ## ENSRNOG00000013515|protein_coding|P70643_RAT|Receptor type protein tyrosine phosphatase psi (Fragment). [Source:UniProtKB/TrEMBL;Acc:P70643] ## {Repeats: trf 27 32 0 class=trf} |
sblock9599 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.53/0.64 | 19/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 7 | 0 11 | 5arm 3arm | 1 1 | nd nd | 0.32 0.37 | 2 3 | 2 | 2 | 11 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------GCCCAUC------------------ | 1 | novel | |
| seed | -----------GGGGACG------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------------------------------------------------TGCCCATCGAGATCCCAAA------- | 19 | 1 | - | |
| ----------GGGGGACGAAGGTCCTTGCACCAAG------------------------------------------- | 25 | - | 1 | |
| rat | caggcgctttGGGGGACGAAGGTCCTTGCACCAAGcgcttctttggcttaagTGCCCATCGAGATCCCAAAtgcgctt | |||
| ****************************************************************************** | ||||
| rat | .(((((((((((((..(((.((..((((..(((((......)))))..))))..))..)))...))))))).)))))) | 0.680 -31.30 | ||
| rat | chromosome:5:160634814:160634891:-1 | intergenic |
sblock11245 [novel_lenNOK_multiarm_DicerNOK_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.37/0.47 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.5 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 25 34 0 | 13 2 36 | 5arm 3arm 3arm | 5 10 10 | nd nd nd | 0.42 0.42 0.33 | 4 4 2 | 4 | 1 | -12 | -12 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------------------------------------------------UGGGGAU----------- | 2 | novel |
| seed | -----------------------------------------------------------------GGAGGAA--------------------------------------------- | 1 | novel |
| seed | --------------------------ACAUUUC------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------TGGAGGAACTCAACTTTGG---------------------------------- | 19 | 1 | |
| --------------------------------------------------------------------------------------------------CTGGGGATTTAGATTTCAA | 19 | 1 | |
| --------------------------------------------------------------------------------------------------CTGGGGATTTAGATTTCA- | 18 | 1 | |
| -------------------------CACATTTCATTACCTGGGA------------------------------------------------------------------------- | 19 | 1 | |
| rat | gaagtcacagtctacatattaacttCACATTTCATTACCTGGGAatgtccctccatgttttctaTGGAGGAACTCAACTTTGGggagattgtgagtgtCTGGGGATTTAGATTTCAA | ||
| ********************************************************************************************************************* | |||
| rat | ((((((..((((..((.....((.(((((((((....((..((...((.((((((((.....)))))))).))....))..)).))))).))))))...))..))))..)))))).. | 1.000 -35.40 |
| rat | chromosome:7:19447256:19447372:1 | intergenic |
novel_lenNOK_multiarm_loopOverlap_randfoldOK (22 loci)
block15889 [novel_lenNOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.44/0.50 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 7 | 1 -4 | 5arm 5arm_loop_3arm | 9 9 | nd nd | 0.22 0.35 | 2 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------UGAUGCU--------------------------------------- | 1 | novel | |
| seed | -----CAAUGAU------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S1 | |||
| -------ATGATGCTGCCTTTCACCAC--------------------------- | 20 | - | 1 | |
| ----TCAATGATGCTGCCTTTC-------------------------------- | 18 | 1 | - | |
| rat | tacaTCAATGATGCTGCCTTTCACCACtgaaaggcatttactgtggtttatgta | |||
| ****************************************************** | ||||
| rat | (((((.(((.((..(((((((((....)))))))))......)).))).))))) | 0.980 -14.70 | ||
| rat | chromosome:10:36579499:36579552:-1 | intergenic |
block648465 [novel_lenNOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.16/0.33 | 19/24/0.33 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 9 14 | -1 -11 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.16 0.38 | 2 6 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------UAUAGUU-------------------------------------------------- | 2 | novel |
| seed | ---------------UUAUAUA--------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------TTATAGTTATATATGAGTA--------------------------------------- | 19 | 2 | |
| --------------GTTATATATGAGTATCCAAACCGT----------------------------- | 24 | 1 | |
| rat | cttagtattTTATAGTTATATATGAGTATCCAAACCGTtatataaaactaaaactaaagtacaaaga | ||
| ******************************************************************* | |||
| rat | (((.(((((((((((((.(((((((((......))..))))))).)))))....)))))))).))). | 1.000 -12.90 |
| rat | chromosome:17:20760081:20760147:1 | intergenic |
block859295 [novel_lenNOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.56/0.59 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 54 35 | -16 -1 | 5arm_loop_3arm 3arm | 1 2 | nd nd | 0.45 0.17 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------CCAGGAG------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------CUCCCAG--------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ------------------------------------------------------GCCAGGAGTTCTCCCAGATCAC---------------------------------------- | 22 | - | 1 | |
| ---------------------------------------------------------------TCTCCCAGATCACAGAGC----------------------------------- | 18 | 1 | - | |
| rat | actgagattattagaccagaggagaggcaagaaagacagacttggatcatttggGCCAGGAGTTCTCCCAGATCACAGAGCtgagatcaatctttcctctggggtatgtgtcagtg | |||
| ******************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000034553 ENSRNOG00000030331 Ceacam6 | |||
| rat | (((((.((...((..((((((((((((...((....(((.(((.((((...((((...((....))))))))))...))))))...))..))))))))))))..)).)).))))). | 0.750 -41.00 | ||
| rat | chromosome:1:80128471:80128586:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000057600|ENSRNOG00000030331 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000034553|ENSRNOG00000030331 ## ENSRNOG00000030331|protein_coding|Ceacam6|carcinoembryonic antigen-related cell adhesion molecule 6 [Source:RefSeq_peptide;Acc:NP_001096828] |
block878168 [novel_lenNOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.50/0.58 | 18/19/0.00 | 0.0 0.0 | 0.0 0.5 | 1 4 | 0 0 | 1 2 | 0 0 | 46 35 | -16 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.39 0.21 | 4 1 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------GGAAUGG---------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------CAAAUGG--------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T4S2 | |||
| ---------------------------------------------------TGGAATGGCAAGCCTGCTG----------------------------------- | 19 | - | 1 | 1 | |
| ---------------------------------------------------TGGAATGGCAAGCCTGCT------------------------------------ | 18 | - | - | 2 | |
| ----------------------------------------------CCAAATGGAATGGCAAGC----------------------------------------- | 18 | 1 | - | - | |
| rat | aggctgctgcctggatctgatttcccttacatctgcagtcttctttCCAAATGGAATGGCAAGCCTGCTGatgcagtggggaagaatagatttggctattgcttc | ||||
| ********************************************************************************************************* | |||||
| rat | ((((....(((.(((((((.(((((((..((((.((((.(((((((((....)))).)).))).)))).))))....)))))))..))))))))))....)))). | 0.980 -38.90 | |||
| rat | chromosome:1:122523683:122523787:-1 | intergenic |
block921187 [novel_lenNOK_multiarm_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.47/0.54 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 33 | 1 -9 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.21 0.42 | 3 6 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------UCUCCUU------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------UUGCUGC------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| ---------------------------------CTTGCTGCTTTTGTGCTCTCCCAC--------------------------------------------------------- | 24 | 1 | - | |
| ----------------------------GTCTCCTTGCTGCTTTTGT------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgtgactttctagcatccctgccaccacGTCTCCTTGCTGCTTTTGTGCTCTCCCACccgtcatggccagccttaaggacctcgaagcgaggtggcacctgttggaaagccaca | |||
| ****************************************************************************************************************** | ||||
| ...................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000029774 ENSRNOG00000021811 RGD1563350_predicted | |||
| rat | .(((.((((((((((....(((((((.(((.(((((((((((...(((......))).......))).)))...))))).......))).)))))))..)))))))))).))). | 0.450 -39.40 | ||
| rat | chromosome:1:224941438:224941551:-1 | intergenic |
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