miR-Intess: classification

other hairpins

novel_lenNOK_Multihit_loopOverlap_randfoldOK (21 loci)

block104740 [novel_lenNOK_Multihit_loopOverlap_randfoldOK]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.003	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	8	-2	3arm_loop	13	nd	0.28	2	1	1	na	na

		reads	miRBase family seed
seed	----------------------------------AGCCUGC------------------	1	novel
		len	cloning frequencies
			T1S1
	---------------------------------CAGCCTGCCTCAATAGAG--------	18	1
rat	agcctgcatcaatagagtgaggctggcccagaaCAGCCTGCCTCAATAGAGtgaggcta
	***********************************************************
rat	(((((.(((...((...((((((.(((........))).)))))).))..)))))))).	0.990 -25.00

rat

chromosome:10:107136787:107136845:1

intergenic ## {Repeats: trf 629 647 0 class=trf}

novel_lenNOK_Multihit_shortStem_bulgeHIGH (21 loci)

block346190 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.334	no	no	0.45/0.47	19/20/0.33	0.3	0.7	3	0	2	0	1	34	5arm	20	nd	0.26	4	3	2	na	na

		reads	miRBase family seed
seed	--CAUCCAG----------------------------------------------------------------------------------------------------------	2	novel
seed	---AUCCAGU---------------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1	T3S1
	-GCATCCAGTTCATCTTGAG-----------------------------------------------------------------------------------------------	19	2	-
	--CATCCAGTTCATCTTGAGGA---------------------------------------------------------------------------------------------	20	-	1
rat	aGCATCCAGTTCATCTTGAGGAtttcaatcggtcataaaataaatgttctggtttcataaaaaaataaaagggaagagagctgagtgggggaaaagggaagacagctgtgaatgt
	*******************************************************************************************************************
	-----------------------------------------------------------------------------------------------------------------------------	ENSRNOT00000051031 ENSRNOG00000031710 Spink2
rat	.(((((((((((.((((.....((((..(((.(((..........(((((..((((..............))))..)))))))).)))..)))).)))).))..)))).)).)))	0.960 -19.94

rat

chromosome:14:33249706:33249820:-1

block435144 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.090	no	no	0.52/0.52	25/25/0.00	0.0	0.0	1	0	1	0	2	5	5arm	11	nd	0.24	4	1	1	na	na

		reads	miRBase family seed
seed	---AAACAGA---------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	--AAAACAGACCTGCGCTTCCAGAGTG----------------------------------------------	25	1
rat	tcAAAACAGACCTGCGCTTCCAGAGTGcagagattggtgctctgcaggaggcaagtgaggcctatctggttgg
	*************************************************************************
rat	.(((..(((((((((((((((....(((((((.......)))))))))))))..)).)))....)))).))).	0.870 -24.00

rat

chromosome:15:21843232:21843304:-1

intergenic

block610623 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.033	no	no	0.74/0.74	19/19/0.00	0.0	0.0	1	0	1	0	2	0	3arm	17	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	------------------------CAGGCUG-------------	1	novel
		len	cloning frequencies
			T1S2
	-----------------------CCAGGCTGAGGCTCGCAGG--	19	1
rat	ggcctgcagaagctactggctgaCCAGGCTGAGGCTCGCAGGtc
	********************************************
rat	(((((((((.(((..((((....)))))))....)).)))))))	0.990 -19.20

rat

chromosome:17:35858778:35858821:-1

intergenic

block774170 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.361	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	2	14	3arm	28	nd	0.22	4	1	1	na	na

		reads	miRBase family seed
seed	-------------------------------------------------------------GCUAAUG------------	1	novel
		len	cloning frequencies
			T3S1
	------------------------------------------------------------GGCTAATGCTGTCCTCAC--	18	1
rat	tctgtctgagggtctttcagataaagctgtatttgtgggttacacacctcaattctcattGGCTAATGCTGTCCTCACag
	********************************************************************************
	------------------------------------------------------------------------------------------	ENSRNOT00000039970 ENSRNOG00000033226
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000050888 ENSRNOG00000034204 LOC685424
	++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++	ENSRNOT00000051707 ENSRNOG00000034204 LOC685424
	------------------------------------------------------------------------------------------	ENSRNOT00000043494 ENSRNOG00000031035 LOC363343
	------------------------------------------------------------------------------------------	ENSRNOT00000042150 ENSRNOG00000031035 LOC363343
rat	.((((..(((((.....(((....(((((...(((.((........)).))).......)))))....))))))))))))	0.610 -16.50

rat

chromosome:19:24454435:24454514:-1

Same_strand|Intronic_non-coding|ENSRNOT00000050888|ENSRNOG00000034204 ## Opposite_strand|Intronic_coding|ENSRNOT00000042150|ENSRNOG00000031035 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000039970|ENSRNOG00000033226 ## Same_strand|Boundary_non-coding|ENSRNOT00000047525|ENSRNOG00000034204 ## ENSRNOG00000034204|protein_coding|LOC685424| ## ENSRNOG00000031035|protein_coding|LOC363343| ## ENSRNOG00000033226|protein_coding||

block829835 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.238	no	no	0.50/0.50	18/18/0.00	0.0	0.0	1	0	1	0	2	10	5arm	22	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	---GAGACAC---------------------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	--TGAGACACAGGTTCCACA-----------------------------------------------	18	1
rat	ggTGAGACACAGGTTCCACAgctgctagcacgtatgctggctgggctgctgctgtcccgtctagtcc
	*******************************************************************
	-----------------------------------------------------------------------------	ENSRNOT00000061512 ENSRNOG00000028519 RGD1560695_predicted
rat	((..((((((((....((((((((((((((....)))))))..))))).))))))...))))...))	1.000 -23.40

rat

chromosome:1:18064967:18065033:-1

block847757 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.021	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	2	25	3arm	60	nd	0.21	4	1	1	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------------------------------GUGGGAG-------------	1	novel
		len	cloning frequencies
			T3S2
	--------------------------------------------------------------------------------TGTGGGAGCTATTGGCCTA--	19	1
rat	cttgggattgatgaccacatgtgctaggaccagtagcccatggaagagtccaagattccatgaacctctagtcctcacccTGTGGGAGCTATTGGCCTAag
	*****************************************************************************************************
	---------------------------------------------------------------------------------------------------------------	ENSRNOT00000041486 ENSRNOG00000033456 LOC308198
	---------------------------------------------------------------------------------------------------------------	ENSRNOT00000051441 ENSRNOG00000033456 LOC308198
	---------------------------------------------------------------------------------------------------------------	ENSRNOT00000059913 ENSRNOG00000033456 LOC308198
rat	((((((.((((((.(((((.(((..(((((.((.((..(((((((..........)))))))...)))).))))))))..)))))....))))))))))))	0.940 -32.40

rat

chromosome:1:52462458:52462558:-1

block888067 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.220	no	no	0.53/0.53	19/19/0.00	0.0	0.0	1	0	1	0	3	20	5arm	20	nd	0.26	4	1	1	na	na

		reads	miRBase family seed
seed	----UCCGCAA------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S2
	---ATCCGCAAAGCCACCAAGT-------------------------------------------------------------------------	19	1
rat	gcaATCCGCAAAGCCACCAAGTagctgaagaatgtcactgtgaagaagcaatgtgtgccattccatccatataatggtggagtcggtaggagtgc
	***********************************************************************************************
rat	(((.(((((....((((((.(((......(((((.(((..((......))....))).)))))......)))..)))))).....)).))).)))	0.770 -24.90

rat

chromosome:1:146611624:146611718:-1

intergenic

block941056 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.237	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	2	22	3arm	14	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AGUGCUG------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------------------------------CAGTGCTGAAAGGTGTCC--	18	1
rat	gtggcccataatcctagcacttcagaggctacatactggaagcttccaaagacagaaaCAGTGCTGAAAGGTGTCCac
	******************************************************************************
	----------------------------------------------------------------------------------------	ENSRNOT00000049699 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000018806 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000040559 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000044778 ENSRNOG00000013351 Stxbp5
rat	((((..(((.....(((((((((.((((((.((...))..))))))....)).......)))))))....))).))))	0.900 -16.81

rat

chromosome:1:4544897:4544974:1

block941058 [novel_lenNOK_Multihit_shortStem_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.237	no	no	0.56/0.56	18/18/0.00	0.0	0.0	1	0	1	0	2	22	3arm	14	nd	0.28	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------------------------AGUGCUG------------	1	novel
		len	cloning frequencies
			T2S1
	----------------------------------------------------------CAGTGCTGAAAGGTGTCC--	18	1
rat	gtggcccataatcctagcacttcagaggctacatactggaagcttccaaagacagaaaCAGTGCTGAAAGGTGTCCac
	******************************************************************************
	----------------------------------------------------------------------------------------	ENSRNOT00000049699 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000018806 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000040559 ENSRNOG00000013351 Stxbp5
	----------------------------------------------------------------------------------------	ENSRNOT00000044778 ENSRNOG00000013351 Stxbp5
rat	((((..(((.....(((((((((.((((((.((...))..))))))....)).......)))))))....))).))))	0.900 -16.81