other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH (21 loci)
sblock703 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.226 | no | no | 0.25/0.37 | 19/24/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 4 | 6 9 | 5arm 3arm | 1 1 | nd nd | 0.46 0.37 | 4 5 | 2 | 1 | 1 | 0 |
| reads | miRBase family seed | ||
| seed | -----ACACAUA------------------------------------------------------------ | 1 | novel |
| seed | --------------------------------------------------AGGAUUU--------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------TAGGATTTTATTGTGGAGG---- | 19 | 1 | |
| ----TACACATAATTTTAAAAGTCACAC-------------------------------------------- | 24 | 1 | |
| rat | gcaaTACACATAATTTTAAAAGTCACACcttctccaaacagaggaagcaTAGGATTTTATTGTGGAGGggca | ||
| ************************************************************************ | |||
| rat | ((......((((((....((((((....((((((......))).))).....)))))))))))).....)). | 0.980 -12.20 |
| rat | chromosome:1:128996945:128997016:-1 | intergenic |
sblock7573 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.856 | no | no | 0.58/0.65 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 34 34 | 5arm 3arm | 1 1 | nd nd | 0.40 0.56 | 4 4 | 2 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | -GACUCGA------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------------UAACGGG----------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| GGACTCGAGCCAATGGGGTC------------------------------------------------------------------------------------------- | 20 | - | 1 | |
| --------------------------------------------------------------------------------------------CTAACGGGGCGTGTTGTGT | 19 | 1 | - | |
| rat | GGACTCGAGCCAATGGGGTCagctcgggtagcgtttctccctttgcgggcgggcctgggccgtgacgcggcggggcgaggactggagactgcCTAACGGGGCGTGTTGTGT | |||
| *************************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009866 ENSRNOG00000007512 NP_001099967.1 | |||
| rat | .(((.((..((....(((.((((((.(((..(((....(((.(((((.((.(((....)))))..))))).))))))...))).))).))))))....)).)).))).... | 0.960 -43.80 | ||
| rat | chromosome:3:104910297:104910407:-1 | Same_strand|Intronic_coding|ENSRNOT00000009866|ENSRNOG00000007512 ## ENSRNOG00000007512|protein_coding|NP_001099967.1|signal recognition particle 14 [Source:RefSeq_peptide;Acc:NP_001099967] |
sblock7913 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.45/0.67 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 2 | 23 18 | 5arm 3arm | 1 1 | nd nd | 0.39 0.41 | 5 6 | 2 | 1 | -3 | 0 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------UCUGAAA---------------- | 1 | novel |
| seed | ---CGGGCUC------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ----------------------------------------------------------------CTCTGAAAGTTTCCAGCTCTGT-- | 22 | 1 | |
| --ACGGGCTCGGCACTAGAC-------------------------------------------------------------------- | 18 | 1 | |
| rat | tgACGGGCTCGGCACTAGACactgcagcctcgggatgtagagcgaagtttgcctgaggacctgcCTCTGAAAGTTTCCAGCTCTGTta | ||
| **************************************************************************************** | |||
| rat | (((((((((.((.(((.......(((((((((((.....((((...)))).)))))))..)))).......))).)).))).)))))) | 1.000 -27.54 |
| rat | chromosome:3:67942755:67942842:1 | intergenic |
sblock7936 [novel_lenNOK_multiarm_DicerNOK_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.32/0.59 | 19/22/0.50 | 1.0 0.0 0.0 | 0.5 0.0 0.0 | 4 1 3 | 0 0 0 | 1 1 1 | 0 0 0 | 0 26 4 | 5 -18 4 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.60 0.53 | 5 7 6 | 8 | 1 | 0 | -3 |
| reads | miRBase family seed | ||
| seed | --------------------------------------AAAAAUU--------------- | 3 | novel |
| seed | --CUAGACA--------------------------------------------------- | 2 | novel |
| seed | ---------------------------AGACAGU-------------------------- | 1 | novel |
| seed | -----GACAAGG------------------------------------------------ | 1 | novel |
| seed | -CCUAGAC---------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------TAAAAATTGCCCACTTCTT---- | 19 | 3 | |
| -CCTAGACAAGGCAGGGCACTCT------------------------------------- | 22 | 2 | |
| --------------------------GAGACAGTCCCTAAAAATTG-------------- | 20 | 1 | |
| TCCTAGACAAGGCAGGGCACT--------------------------------------- | 21 | 1 | |
| ----AGACAAGGCAGGGCACTCT------------------------------------- | 19 | 1 | |
| rat | TCCTAGACAAGGCAGGGCACTCTtggGAGACAGTCCCTAAAAATTGCCCACTTCTTttcc | ||
| ************************************************************ | |||
| rat | .....((.((((..(((((.....((((.....)))).......)))))...)))).)). | 0.780 -15.20 |
| rat | chromosome:3:76933779:76933838:1 | intergenic |
novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (21 loci)
block334482 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.121 | no | no | 0.55/0.63 | 19/22/0.75 | 1.5 0.0 0.0 | 1.0 0.0 0.0 | 2 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 22 32 21 | -6 -15 -3 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 3 3 4 | nd nd nd | 0.35 0.36 0.42 | 4 4 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------GAGCAGG-------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------ACCUAUU-------------------------------- | 1 | novel | ||
| seed | --------------------------CAGGUGA----------------------------------------------- | 1 | miR-125a | ||
| seed | ---------------------------------GAGUGGA---------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S2 | T5S1 | |||
| ----------------------------------------CACCTATTCCCCAGCCCAG--------------------- | 19 | - | - | 1 | |
| --------------------------------AGAGTGGACACCTATTCCCCAG-------------------------- | 22 | 1 | - | - | |
| -------------------------GCAGGTGAGAGTGGACACCT----------------------------------- | 20 | - | 1 | - | |
| ----------------------GGAGCAGGTGAGAGTGGACAC------------------------------------- | 21 | - | - | 1 | |
| rat | tcatccagagcaccttcaagctGGAGCAGGTGAGAGTGGACACCTATTCCCCAGCCCAGcccagccatcaccctgaatgt | ||||
| ******************************************************************************** | |||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000042632 ENSRNOG00000033121 LOC501237 | ||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000039905 ENSRNOG00000033121 LOC501237 | ||||
| ------------------------------------------------------------------------------------------ | ENSRNOT00000040779 ENSRNOG00000033121 LOC501237 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044993 ENSRNOG00000026588 LOC680812 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061378 ENSRNOG00000026588 LOC680812 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061377 ENSRNOG00000039950 | ||||
| rat | .(((.(((...........(((((.((.(((..((((((....))))))....)))..))))))).......))).))). | 0.600 -20.17 | |||
| rat | chromosome:14:4559739:4559818:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049600|ENSRNOG00000033121 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000039905|ENSRNOG00000033121 ## Same_strand|Intronic_non-coding|ENSRNOT00000044993|ENSRNOG00000026588 ## Same_strand|Intronic_coding|ENSRNOT00000061378|ENSRNOG00000026588 ## Same_strand|Boundary_non-coding|ENSRNOT00000061383|ENSRNOG00000026588 ## ENSRNOG00000033121|protein_coding|LOC501237| ## ENSRNOG00000039950|protein_coding|| ## ENSRNOG00000026588|protein_coding|LOC680812|similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221] |
block469141 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.446 | no | no | 0.50/0.65 | 19/23/0.75 | 0.0 2.5 | 2.0 1.5 | 2 2 | 0 0 | 1 2 | 0 0 | 17 8 | -14 -4 | 5arm_loop_3arm 3arm | 3 5 | nd nd | 0.48 0.50 | 4 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------GGCACUC---------------------------------- | 2 | novel | ||
| seed | --------------------------------ACGAAGC-------------------- | 1 | novel | ||
| seed | ---------------------------UAAGGAC------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S2 | |||
| --------------------------GTAAGGACGAAGCCATGTTCAG----------- | 22 | - | 1 | - | |
| -----------------CGGCACTCCGTAAGGACGA----------------------- | 19 | 1 | - | - | |
| -----------------CGGCACTCCGTAAGGACGAAGCC------------------- | 23 | 1 | - | - | |
| -------------------------------GACGAAGCCATGTTCAGCTC-------- | 20 | - | - | 1 | |
| rat | ggcacagctttctaagcCGGCACTCCGTAAGGACGAAGCCATGTTCAGCTCgagcgcca | ||||
| *********************************************************** | |||||
| .............................................>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000036746 ENSRNOG00000026557 Rps7 | ||||
| rat | (((...((((.((.(((.(((..(((....)))....)))..))).))...))))))). | 0.440 -17.20 | |||
| rat | chromosome:15:106044511:106044569:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000036746|ENSRNOG00000026557 ## ENSRNOG00000026557|pseudogene|Rps7|ribosomal protein S7 (Rps7), mRNA [Source:RefSeq_dna;Acc:NM_031570] |
block482642 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.773 | no | no | 0.40/0.44 | 18/21/0.75 | 0.0 2.0 | 0.0 2.7 | 1 3 | 0 0 | 1 3 | 0 0 | 20 24 | -4 -15 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.50 0.55 | 5 5 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------CCAAGUU-------------------------------------------- | 1 | novel | ||
| seed | -------------------------CGCCAAG---------------------------------------------- | 1 | novel | ||
| seed | ---------------------CUGUCGC-------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------AAGUUAU------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T3S2 | |||
| ----------------------------CAAGTTATTCAAGCAAGACGC----------------------------- | 21 | 1 | - | - | |
| --------------------------GCCAAGTTATTCAAGCAAGAC------------------------------- | 21 | - | - | 1 | |
| --------------------TCTGTCGCCAAGTTATTC---------------------------------------- | 18 | - | 1 | - | |
| ------------------------TCGCCAAGTTATTCAAGCAA---------------------------------- | 20 | - | 1 | - | |
| rat | gatttcctagcccaaagctcTCTGTCGCCAAGTTATTCAAGCAAGACGCgataaaattttactctcgctgcggagctc | ||||
| ****************************************************************************** | |||||
| rat | ((.((((((((...........((((((...(((.....))).....)))))).............)))).)))).)) | 0.610 -11.95 | |||
| rat | chromosome:15:27071408:27071485:1 | intergenic |
block603762 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.48/0.59 | 21/23/1.00 | 1.7 0.0 | 1.0 0.0 | 3 2 | 0 0 | 2 1 | 0 0 | 22 13 | -19 -2 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.61 0.41 | 11 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------CCUUCAU----------------------------------- | 2 | miR-205 | |
| seed | ------------------------------------------AGGUCUU--------------------------- | 2 | novel | |
| seed | -----------------------------GCCAUCC---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------------CAGGTCTTTGCTGCCAACTCCC------------- | 22 | - | 2 | |
| ---------------------------------TCCTTCATCAGGTCTTTGCTG---------------------- | 21 | - | 2 | |
| ----------------------------AGCCATCCTTCATCAGGTCTTTG------------------------- | 23 | 1 | - | |
| rat | gcccacacacccagggcacaggctccacAGCCATCCTTCATCAGGTCTTTGCTGCCAACTCCCtgcttgctcagcc | |||
| **************************************************************************** | ||||
| rat | ((.....((..(((((....(((..((.((((...........)).)).))..)))....)))))..))....)). | 0.480 -17.00 | ||
| rat | chromosome:17:20798607:20798682:-1 | intergenic |
block1413997 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.33/0.45 | 22/24/1.00 | 1.3 0.0 | 2.0 0.0 | 3 3 | 0 0 | 1 1 | 0 0 | 37 51 | -10 -18 | 5arm_loop_3arm 5arm_loop_3arm | 2 2 | nd nd | 0.45 0.36 | 5 6 | 6 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------ACUAUGA-------------------------------------------------------- | 3 | novel |
| seed | --------------------------------------GGCUAGU---------------------------------------------------------------------- | 2 | novel |
| seed | ------------------------------------------AGUCAGU------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------TACTATGATGAGTGCTCCTTGG------------------------------------------ | 22 | 3 | |
| -------------------------------------TGGCTAGTCAGTTTTACTATGA-------------------------------------------------------- | 22 | 2 | |
| -----------------------------------------TAGTCAGTTTTACTATGATGAGTG-------------------------------------------------- | 24 | 1 | |
| rat | tagaattttaactgctaccatagtgtgcatgaggacaTGGCTAGTCAGTTTTACTATGATGAGTGCTCCTTGGccatggatctttaagactctttaatgagcccttaaattgtct | ||
| ******************************************************************************************************************* | |||
| rat | .(((..(((((..(((.....((.((...(((((((((((((((..(((...(((......))))))..)))))))))..))))))..)).))......)))..)))))...))) | 0.680 -25.40 |
| rat | chromosome:3:141686170:141686284:-1 | intergenic |
block1499782 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.373 | no | no | 0.35/0.43 | 20/22/1.00 | 1.2 0.0 | 1.0 0.0 | 4 1 | 0 0 | 2 1 | 0 0 | 19 13 | -18 -2 | 5arm_loop_3arm 3arm_loop | 2 2 | nd nd | 0.57 0.50 | 5 4 | 5 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------GGCCAUA------------------------------- | 3 | novel | |
| seed | --------------------GACAUGG------------------------------------ | 1 | novel | |
| seed | -------------------------------ACUUUUU------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------TGGCCATACTTTTTCTCCTGT------------------ | 21 | 1 | 2 | |
| ------------------------------TACTTTTTCTCCTGTAACCA------------- | 20 | - | 1 | |
| -------------------TGACATGGCCATACTTTTTCTC---------------------- | 22 | - | 1 | |
| rat | agcatcaagtaggttgccgTGACATGGCCATACTTTTTCTCCTGTAACCAttcctttattgct | |||
| *************************************************************** | ||||
| rat | ((((..(((..((((((...((...((.....))...))....))))))....)))...)))) | 0.550 -9.30 | ||
| rat | chromosome:3:141754496:141754558:1 | intergenic |
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