other hairpins
novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (21 loci)
block770035 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.423 | no | no | 0.35/0.55 | 19/24/0.75 | 0.0 3.7 0.0 | 1.5 5.7 0.0 | 4 3 1 | 0 0 0 | 2 2 1 | 0 0 0 | 37 42 34 | -7 -19 2 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.38 0.37 0.45 | 4 4 5 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------------AGUUAAA--------------------------------------------------------------------- | 4 | novel | ||
| seed | -----------------------------------------------------------AGCUAGG------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------CACAUAG----------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------AGUUGUA------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------GGGCACA-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S1 | |||
| -----------------------------------------------GCACATAGTTGTAGCTAGGAGGAC------------------------------------------- | 24 | - | - | 1 | |
| ----------------------------------------------------------TAGCTAGGAGGACTGTCGTCAG---------------------------------- | 22 | - | - | 1 | |
| -------------------------------------TAGTTAAAGGGCACATAGTTGT------------------------------------------------------- | 22 | 1 | - | - | |
| --------------------------------------------AGGGCACATAGTTGTAGCT--------------------------------------------------- | 19 | - | 1 | - | |
| -------------------------------------TAGTTAAAGGGCACATAGTTG-------------------------------------------------------- | 21 | - | - | 1 | |
| -------------------------------------TAGTTAAAGGGCACATAGTT--------------------------------------------------------- | 20 | - | - | 1 | |
| -------------------------------------TAGTTAAAGGGCACATAGT---------------------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------TAGTTGTAGCTAGGAGGACT------------------------------------------ | 20 | - | - | 1 | |
| rat | ttgatacacagatttttaaaggacgagggcaggacgcTAGTTAAAGGGCACATAGTTGTAGCTAGGAGGACTGTCGTCAGcaagtttctgtccgatacagtatattgttctcag | ||||
| ****************************************************************************************************************** | |||||
| rat | .(((.(((............(((((..(((..((((.(((((....((((((....))).))).....))))).)))).....)))..)))))............)))..))). | 0.740 -26.95 | |||
| rat | chromosome:19:15928324:15928437:-1 | intergenic |
block878940 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.48/0.55 | 20/22/1.00 | 2.5 1.5 | 2.5 2.0 | 2 2 | 0 0 | 2 2 | 0 0 | 28 42 | -3 -14 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.36 0.60 | 4 10 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------ACAGUGC---------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------CUGUUUC--------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------GACACAG------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------UCCCUCU---------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| ----------------------------TCTGTTTCCCTCTCTGACACAG------------------------------------------------------------- | 22 | 1 | - | |
| ---------------------------------------------CACAGTGCCATCCAACATACT--------------------------------------------- | 21 | - | 1 | |
| ------------------------------------------TGACACAGTGCCATCCAACA------------------------------------------------- | 20 | 1 | - | |
| ---------------------------------TTCCCTCTCTGACACAGTGCCA-------------------------------------------------------- | 22 | - | 1 | |
| rat | ggcctggagcacttaactgtgccagtccTCTGTTTCCCTCTCTGACACAGTGCCATCCAACATACTaggtccccagggagagaggacatggtgctaaggctgcagagagtc | |||
| *************************************************************************************************************** | ||||
| rat | ...(((.(((.((((...(((((((((((((..((((((....(((..((((..........))))..)))...))))))))))))).))))))))))))).)))...... | 1.000 -42.10 | ||
| rat | chromosome:1:124830273:124830383:-1 | intergenic |
block1601185 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.334 | no | no | 0.26/0.43 | 18/22/0.75 | 1.7 0.0 | 0.7 0.0 | 7 1 | 0 0 | 1 1 | 0 0 | 12 22 | -4 -10 | 5arm_loop 5arm_loop_3arm | 3 5 | nd nd | 0.45 0.57 | 4 7 | 8 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------CAGUAAA--------------------------------------------- | 3 | novel |
| seed | -------------AUCAGUA----------------------------------------------- | 2 | novel |
| seed | -------------------AAACUUC----------------------------------------- | 2 | novel |
| seed | -----------------------UUCUUCU------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------TCAGTAAACTTCTTCTCAGT--------------------------------- | 20 | 3 | |
| ------------TATCAGTAAACTTCTTCTCAGT--------------------------------- | 22 | 2 | |
| ----------------------CTTCTTCTCAGTTATAGCCTG------------------------ | 21 | 1 | |
| ------------------TAAACTTCTTCTCAGTTA------------------------------- | 18 | 1 | |
| ------------------TAAACTTCTTCTCAGTTAT------------------------------ | 19 | 1 | |
| rat | gatccttgccacTATCAGTAAACTTCTTCTCAGTTATAGCCTGctatggaggatactctaggggatt | ||
| ******************************************************************* | |||
| rat | ((((((.....(((..((((..((((....(((.......)))....))))..)))).))))))))) | 0.810 -13.30 |
| rat | chromosome:4:164896686:164896752:-1 | intergenic |
block1697128 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.207 | no | no | 0.26/0.43 | 18/22/0.75 | 1.7 0.0 | 0.7 0.0 | 7 1 | 0 0 | 1 1 | 0 0 | 5 15 | -4 -10 | 5arm_loop 5arm_loop_3arm | 3 5 | nd nd | 0.45 0.57 | 4 7 | 8 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------CAGUAAA------------------------------------------- | 3 | novel |
| seed | ------AUCAGUA--------------------------------------------- | 2 | novel |
| seed | ------------AAACUUC--------------------------------------- | 2 | novel |
| seed | ----------------UUCUUCU----------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------TCAGTAAACTTCTTCTCAGT------------------------------- | 20 | 3 | |
| -----TATCAGTAAACTTCTTCTCAGT------------------------------- | 22 | 2 | |
| ---------------CTTCTTCTCAGTTATAGCCTG---------------------- | 21 | 1 | |
| -----------TAAACTTCTTCTCAGTTA----------------------------- | 18 | 1 | |
| -----------TAAACTTCTTCTCAGTTAT---------------------------- | 19 | 1 | |
| rat | gccacTATCAGTAAACTTCTTCTCAGTTATAGCCTGctatggaggatactctaggggt | ||
| ********************************************************** | |||
| rat | (((.(((..((((..((((....(((.......)))....))))..)))).))).))) | 1.000 -13.00 |
| rat | chromosome:4:164707747:164707804:1 | intergenic |
sblock2747 [novel_multiarm_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.742 | no | no | 0.70/0.89 | 19/23/0.75 | 3.0 1.0 | 1.5 0.0 | 2 2 | 0 0 | 2 2 | 0 0 | 19 17 | -7 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.43 0.37 | 4 4 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------CCGCCGG---------------------------- | 1 | novel | ||
| seed | --------------------UGCCGAG-------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------AGCCGCC------------------------------ | 1 | novel | ||
| seed | --------------------------GCGCCUG-------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -----------------------------------------------GCCGCCGGCGTCGCCTCCC----------------- | 19 | 1 | - | - | |
| -------------------------AGCGCCTGTCAGCCATCGCC-------------------------------------- | 20 | 1 | - | - | |
| ---------------------------------------------GAGCCGCCGGCGTCGCCTCCC----------------- | 21 | - | 1 | - | |
| -------------------CTGCCGAGCGCCTGTCAGCCATC----------------------------------------- | 23 | - | - | 1 | |
| rat | gccccggtgccgggccggcCTGCCGAGCGCCTGTCAGCCATCGCCGAGCCGCCGGCGTCGCCTCCCgcccagcacacctcggc | ||||
| *********************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055884 ENSRNOG00000034013 Acaca | ||||
| ................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000050175 ENSRNOG00000034013 Acaca | ||||
| ...............................................................................>>>>>>>>>>>>>> | ENSRNOT00000044366 ENSRNOG00000034013 Acaca | ||||
| rat | (((...((((.((((.(((.(((((.(((....((.((....)).))..))))))))..)))....)))).)))).....))) | 0.980 -35.30 | |||
| rat | chromosome:10:72467753:72467835:1 | Same_strand|Boundary_non-coding|ENSRNOT00000050175|ENSRNOG00000034013 ## Same_strand|Intronic_non-coding|ENSRNOT00000055884|ENSRNOG00000034013 ## ENSRNOG00000034013|protein_coding|Acaca|Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes: Biotin carboxylase (EC 6.3.4.14)]. [Source:UniProtKB/Swiss-Prot;Acc:P11497] |
novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK (20 loci)
block428012 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -1 | 3arm | 12 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GGAGACU----------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------TGGAGACTTCTGCAGAGG- | 18 | 1 | |
| rat | gcctttccagactctctgctactcaacTGGAGACTTCTGCAGAGGc | ||
| ********************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050003 ENSRNOG00000029733 | ||
| rat | ((((((.((((.(((((...........)))))..)))).)))))) | 1.000 -15.60 |
| rat | chromosome:15:4679250:4679295:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000061597|ENSRNOG00000029733 ## Same_strand|Intronic_coding|ENSRNOT00000050003|ENSRNOG00000029733 ## ENSRNOG00000029733|protein_coding|| |
block473021 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -1 | 3arm | 12 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GGAGACU----------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------TGGAGACTTCTGCAGAGG- | 18 | 1 | |
| rat | gcctttccagactctctgctactcaacTGGAGACTTCTGCAGAGGc | ||
| ********************************************** | |||
| rat | ((((((.((((.(((((...........)))))..)))).)))))) | 1.000 -15.60 |
| rat | chromosome:15:5178084:5178129:1 | intergenic |
block473118 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -1 | 3arm | 12 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GGAGACU----------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------TGGAGACTTCTGCAGAGG- | 18 | 1 | |
| rat | gcctttccagactctctgctacccaacTGGAGACTTCTGCAGAGGc | ||
| ********************************************** | |||
| rat | ((((((.((((.(((((...........)))))..)))).)))))) | 1.000 -15.60 |
| rat | chromosome:15:5293449:5293494:1 | intergenic |
block473606 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -1 | 3arm | 12 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GGAGACU----------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------TGGAGACTTCTGCAGAGG- | 18 | 1 | |
| rat | gcctttccagactctctgctactcaacTGGAGACTTCTGCAGAGGc | ||
| ********************************************** | |||
| rat | ((((((.((((.(((((...........)))))..)))).)))))) | 1.000 -15.60 |
| rat | chromosome:15:6009290:6009335:1 | intergenic |
block473714 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -1 | 3arm | 12 | nd | 0.17 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------GGAGACU----------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ---------------------------TGGAGACTTCTGCAGAGG- | 18 | 1 | |
| rat | gcctttccagactctctgctactcaacTGGAGACTTCTGCAGAGGc | ||
| ********************************************** | |||
| rat | ((((((.((((.(((((...........)))))..)))).)))))) | 1.000 -15.60 |
| rat | chromosome:15:6188309:6188354:1 | intergenic |
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