other hairpins
novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK (20 loci)
block961534 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.15/0.16 | 19/20/0.67 | 0.0 | 0.7 | 3 | 0 | 2 | 0 | 1 | -3 | 3arm_loop | 26 | nd | 0.30 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------AUGAUUA------------- | 3 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ------------------AATGATTATTTATAAAGTCT- | 20 | 1 | 1 | |
| ------------------AATGATTATTTATAAAGTC-- | 19 | - | 1 | |
| rat | tggacttggaatactcaaAATGATTATTTATAAAGTCTa | |||
| *************************************** | ||||
| rat | (((((((.(((((.((.....)).)))))...))))))) | 1.000 -9.80 | ||
| rat | chromosome:1:50957093:50957131:1 | intergenic |
block962244 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.15/0.16 | 19/20/0.67 | 0.0 | 0.7 | 3 | 0 | 2 | 0 | 1 | -3 | 3arm_loop | 26 | nd | 0.30 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------AUGAUUA------------- | 3 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ------------------AATGATTATTTATAAAGTCT- | 20 | 1 | 1 | |
| ------------------AATGATTATTTATAAAGTC-- | 19 | - | 1 | |
| rat | tggacttggaatactcaaAATGATTATTTATAAAGTCTa | |||
| *************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044862 ENSRNOG00000032704 | |||
| rat | (((((((.(((((.((.....)).)))))...))))))) | 1.000 -9.80 | ||
| rat | chromosome:1:51342249:51342287:1 | Same_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
block964629 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.15/0.16 | 19/20/0.67 | 0.0 | 0.7 | 3 | 0 | 2 | 0 | 1 | -3 | 3arm_loop | 26 | nd | 0.30 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------AUGAUUA------------- | 3 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ------------------AATGATTATTTATAAAGTCT- | 20 | 1 | 1 | |
| ------------------AATGATTATTTATAAAGTC-- | 19 | - | 1 | |
| rat | tggacttggaatactcaaAATGATTATTTATAAAGTCTa | |||
| *************************************** | ||||
| rat | (((((((.(((((.((.....)).)))))...))))))) | 1.000 -9.80 | ||
| rat | chromosome:1:52368367:52368405:1 | intergenic |
block964766 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.004 | no | no | 0.15/0.16 | 19/20/0.67 | 0.0 | 0.7 | 3 | 0 | 2 | 0 | 1 | -3 | 3arm_loop | 26 | nd | 0.30 | 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------AUGAUUA------------- | 3 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| ------------------AATGATTATTTATAAAGTCT- | 20 | 1 | 1 | |
| ------------------AATGATTATTTATAAAGTC-- | 19 | - | 1 | |
| rat | tggacttggaatactcaaAATGATTATTTATAAAGTCTa | |||
| *************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000051441 ENSRNOG00000033456 LOC308198 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000059913 ENSRNOG00000033456 LOC308198 | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044415 ENSRNOG00000033456 LOC308198 | |||
| rat | (((((((.(((((.((.....)).)))))...))))))) | 1.000 -9.80 | ||
| rat | chromosome:1:52526937:52526975:1 | Same_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
block2466903 [novel_lenNOK_Multihit_shortStem_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.32/0.32 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 1 | -3 | 3arm_loop | 19 | nd | 0.21 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------GACUAGA------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -----------------AGACTAGATGTGATAAAGT- | 19 | 1 | |
| rat | tgctttaacatctagagAGACTAGATGTGATAAAGTa | ||
| ************************************* | |||
| rat | (((((((((((((((.....))))))))..))))))) | 1.000 -13.20 |
| rat | chromosome:9:1848330:1848366:-1 | intergenic |
novel_multiarm_5varHIGH_loopOverlap (20 loci)
block95521 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.53/0.64 | 18/23/0.75 | 0.0 0.0 4.0 | 0.5 0.0 2.5 | 2 2 4 | 0 0 0 | 2 1 4 | 0 0 0 | 40 22 9 | -19 -1 7 | 5arm_loop_3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.59 0.33 0.21 | 7 5 2 | 8 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------ACGGUGG-------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------------GGAACAG-------------------- | 2 | novel | ||||
| seed | --------------------------------------------------GUGGCUA----------------------------------- | 2 | novel | ||||
| seed | ------------------------------------------------------------AGCUGGG------------------------- | 1 | novel | ||||
| seed | ----------------------------------------------------------GGAGCUG--------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S2 | T2S1 | T3S1 | T3S2 | T4S2 | |||
| -------------------------------------------------AGTGGCTACGGAGCTGGGAAC---------------------- | 21 | - | - | 2 | - | - | |
| ----------------------------------------------------------------GGGAACAGTAGTGACTGCT--------- | 19 | 1 | - | - | - | - | |
| ----------------------------------------------------------------GGGAACAGTAGTGACTGC---------- | 18 | - | - | - | - | 1 | |
| ----------------------------------------GACGGTGGAAGTGGCTACGGA------------------------------- | 21 | - | - | 1 | - | - | |
| ---------------------------------------------------------CGGAGCTGGGAACAGTAGTGAC------------- | 22 | - | - | - | 1 | - | |
| ----------------------------------------GACGGTGGAAGTGGCTACGGAG------------------------------ | 22 | - | - | - | 1 | - | |
| -----------------------------------------------------------GAGCTGGGAACAGTAGTGACTGC---------- | 23 | - | 1 | - | - | - | |
| rat | gggcgcaactgacgtgcggcggcgtttccgggaagatggcGACGGTGGAAGTGGCTACGGAGCTGGGAACAGTAGTGACTGCTgtcgggcct | ||||||
| ******************************************************************************************** | |||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055238 ENSRNOG00000036814 Atp6v0a1 | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055237 ENSRNOG00000036814 Atp6v0a1 | ||||||
| rat | ((((....((((((.((((((((((((((((.....((((.((.......)).)))).....)))))))).))..)).)))))))))))))) | 0.760 -33.20 | |||||
| rat | chromosome:10:90027025:90027116:1 | Same_strand|Intronic_coding|ENSRNOT00000055238|ENSRNOG00000036814 ## ENSRNOG00000036814|protein_coding|Atp6v0a1|ATPase, H+ transporting, lysosomal V0 subunit A1 Gene [Source:MGI (curated);Acc:Atp6v0a1-001] |
block208874 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.446 | no | no | 0.37/0.59 | 19/24/0.78 | 0.0 3.3 | 1.3 5.3 | 6 3 | 0 0 | 1 2 | 0 0 | 33 8 | -18 0 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.61 0.27 | 7 2 | 9 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------GAGAGAC---------------------------------------- | 6 | novel | |
| seed | ----------------------------------------------ACAUAUG---------------------------- | 1 | novel | |
| seed | --------------------------------------------CUACAUA------------------------------ | 1 | novel | |
| seed | ----------------------------------------------------GCCAUGG---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| ---------------------------------TGAGAGACGATCTACATATGCCA------------------------- | 23 | - | 4 | |
| ---------------------------------TGAGAGACGATCTACATAT----------------------------- | 19 | - | 2 | |
| -------------------------------------------TCTACATATGCCATGGTCCA------------------ | 20 | - | 1 | |
| ---------------------------------------------TACATATGCCATGGTCCAGGTCAA------------ | 24 | 1 | - | |
| ---------------------------------------------------TGCCATGGTCCAGGTCAAGTCC-------- | 22 | - | 1 | |
| rat | cctctgtggggattgactgagcgaggaagagacTGAGAGACGATCTACATATGCCAtggtccaggtcaagtccagtgaggc | |||
| ********************************************************************************* | ||||
| rat | ((((..((((..((((((((.((.((.........(((.....))).......)).)).))..)))))).))))..)))). | 0.990 -22.19 | ||
| rat | chromosome:12:5607422:5607502:1 | intergenic |
block999022 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.268 | no | no | 0.35/0.59 | 19/23/0.92 | 2.0 0.0 0.0 | 2.3 0.0 0.0 | 3 8 1 | 0 0 0 | 1 1 1 | 0 0 0 | 19 35 41 | -5 -12 -20 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 1 1 1 | nd nd nd | 0.27 0.55 0.55 | 3 8 8 | 13 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------GACACUG---------------------------------------------------- | 9 | novel |
| seed | --------------------------GGUGGGC-------------------------------------------------------------- | 2 | novel |
| seed | --------------------GACACUG-------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------GAAGAAU---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -----------------------------------TGACACTGAAGAATTACAGA---------------------------------------- | 20 | 8 | |
| -------------------------TGGTGGGCAGTGACACTGAAGAA----------------------------------------------- | 23 | 2 | |
| -----------------------------------------TGAAGAATTACAGAATGGCCAC-------------------------------- | 22 | 1 | |
| -------------------TGACACTGGTGGGCAGTGACAC------------------------------------------------------ | 22 | 1 | |
| -----------------------------------TGACACTGAAGAATTACAG----------------------------------------- | 19 | 1 | |
| rat | ggctccagaatgccagccctgacactggtgggcagTGACACTGAAGAATTACAGAatggccactgaagcttcatgtttggtggcacttagaacca | ||
| *********************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||
| rat | ((.((..((.(((((.((..((((..(((...(((((.(((((........)))..))..)))))..)))...)))).))))))).)).)).)). | 0.550 -26.30 |
| rat | chromosome:1:129045562:129045656:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
block1092418 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.411 | no | no | 0.33/0.56 | 18/22/0.78 | 0.0 4.3 0.0 | 0.0 6.5 0.0 | 2 6 1 | 0 0 0 | 1 3 1 | 0 0 0 | 30 7 4 | -16 -1 14 | 5arm_loop_3arm 3arm 3arm | 1 1 3 | nd nd nd | 0.50 0.43 0.28 | 4 5 3 | 9 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------UGAGAUC------------------------------------ | 2 | novel | ||
| seed | --------------------------------------UCUUCUG----------------------------- | 2 | novel | ||
| seed | -------------------------------------------UGACCCC------------------------ | 1 | novel | ||
| seed | ------------------------------------------CUGACCC------------------------- | 1 | novel | ||
| seed | ----------------------------------------------CCCCACC--------------------- | 1 | novel | ||
| seed | -----------------------------------------------------AAACACA-------------- | 1 | novel | ||
| seed | -----------------------------------------------CCCACCA-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T3S2 | |||
| ------------------------------CTGAGATCTCTTCTGACCCC------------------------ | 20 | - | 2 | - | |
| -----------------------------------------TCTGACCCCACCAAACACAC------------- | 20 | - | - | 1 | |
| ------------------------------------------CTGACCCCACCAAACACACA------------ | 20 | - | 1 | - | |
| -------------------------------------CTCTTCTGACCCCACCAAACAC--------------- | 22 | - | 1 | - | |
| -------------------------------------CTCTTCTGACCCCACCAA------------------- | 18 | 1 | - | - | |
| ----------------------------------------------------CAAACACACAAGAAGAAA---- | 18 | - | - | 1 | |
| ---------------------------------------------ACCCCACCAAACACACAAGA--------- | 20 | - | 1 | - | |
| ----------------------------------------------CCCCACCAAACACACAAGAAG------- | 21 | - | 1 | - | |
| rat | ccttttagttcttgttgattctgcctcagtCTGAGATCTCTTCTGACCCCACCAAACACACAAGAAGAAAatgg | ||||
| ************************************************************************** | |||||
| ......................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000048332 ENSRNOG00000032844 RT1-Da | ||||
| rat | ((((((..(((((((((....((..((((...((....))..))))...)).....)).))))))).)))).)) | 0.830 -11.00 | |||
| rat | chromosome:20:4636295:4636368:1 | Same_strand|Boundary_non-coding|ENSRNOT00000048332|ENSRNOG00000032844 ## ENSRNOG00000032844|protein_coding|RT1-Da|RT1 class II, locus Da [Source:RefSeq_peptide;Acc:NP_001008847] |
block1093577 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.179 | no | no | 0.55/0.70 | 20/25/0.86 | 4.8 0.0 | 6.2 2.0 | 5 2 | 0 0 | 2 2 | 0 0 | 14 31 | 1 -9 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.22 0.28 | 2 4 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------GCCCGUC------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------CGGAACC------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------CCUCUCA----------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------GCUGCCC---------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------------TGCCCGTCGGAACCTCCTCTCA----------------------------------------------------------------------------- | 22 | 1 | 1 | |
| -----------------------TCGGAACCTCCTCTCATGCT------------------------------------------------------------------------- | 20 | 1 | - | |
| -----------------------TCGGAACCTCCTCTCATGCTTGG---------------------------------------------------------------------- | 23 | 1 | - | |
| --------------TGCTGCCCGTCGGAACCTCC---------------------------------------------------------------------------------- | 20 | 1 | - | |
| -------------------------------TCCTCTCATGCTTGGCCTGGG---------------------------------------------------------------- | 21 | 1 | - | |
| -------------------------------TCCTCTCATGCTTGGCCTGGGTCAG------------------------------------------------------------ | 25 | - | 1 | |
| rat | aggggaagtgagtaTGCTGCCCGTCGGAACCTCCTCTCATGCTTGGCCTGGGTCAGttggagacggactgttgattttcctggtttaatagctgtgtactacacatcaagtcccct | |||
| ******************************************************************************************************************** | ||||
| rat | ((((((.((((((((((.((......((((((((((((..((.((((....))))))..)))).)))..............)))))....)).))))))).)))......)))))) | 0.420 -36.63 | ||
| rat | chromosome:20:5540958:5541073:1 | intergenic |
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