other hairpins
novel_multiarm_5varHIGH_loopOverlap (20 loci)
sblock11166 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.37/0.52 | 19/24/0.80 | 0.0 0.0 4.0 | 0.0 0.0 1.3 | 1 1 3 | 0 0 0 | 1 1 3 | 0 0 0 | 8 31 1 | 21 -4 21 | 5arm 3arm_loop 3arm | 5 5 10 | nd nd nd | 0.16 0.38 0.29 | 2 4 3 | 5 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------UCUGAUC------------- | 2 | novel | ||
| seed | ---------GUAAGGA---------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------UCUAUUU------------------- | 1 | novel | ||
| seed | -----------------------------------------------------GCAAUGU-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| -----------------------------------------------------------------------------------TTCTGATCTCTTTCGTGGTC- | 20 | 1 | 1 | - | |
| ----------------------------------------------------TGCAATGTCATAGGGCCCTGT------------------------------- | 21 | 1 | - | - | |
| --------TGTAAGGATTTGGTGGATT----------------------------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------------------------------ATCTATTTCTGATCTCTTTCGTGG--- | 24 | - | - | 1 | |
| rat | gggcgaacTGTAAGGATTTGGTGGATTaggtttccgggtgccagacgtgagtTGCAATGTCATAGGGCCCTGTgataATCTATTTCTGATCTCTTTCGTGGTCc | ||||
| ******************************************************************************************************** | |||||
| rat | ((((..((...(((((((.(((((((((....((((((.(((.(((((........)))))....))))))).)))))))))))...)))).)))..)).)))) | 0.990 -32.20 | |||
| rat | chromosome:7:17180487:17180590:1 | intergenic |
sblock12220 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.62/0.74 | 19/24/0.80 | 0.0 2.7 0.0 | 0.0 3.3 0.0 | 1 3 1 | 0 0 0 | 1 3 1 | 0 0 0 | 15 40 10 | 26 -8 17 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.45 0.14 | 6 5 2 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------GAGCACA---------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------------------------CCAGGCU----------------------- | 1 | novel | |||
| seed | -----------------------------------------GGACGAG-------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------CCUCGGG--------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------CGAGCACAGCGGGTGGTAGG---------------------------------------------------- | 20 | - | - | 1 | - | |
| -------------------------------------------------------------------------------------CCCAGGCTACCCTGACTCTTG---------- | 21 | 1 | - | - | - | |
| ----------------------------------------CGGACGAGCACAGCGGGTGGT------------------------------------------------------- | 21 | - | 1 | - | - | |
| ---------------GCCTCGGGGTGGCAGCTCA---------------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| --------------------------------------------CGAGCACAGCGGGTGGTAGGCATC------------------------------------------------ | 24 | - | - | - | 1 | |
| rat | accctcccagccgggGCCTCGGGGTGGCAGCTCAggggcaCGGACGAGCACAGCGGGTGGTAGGCATCtcatcccgctctaaagcCCCAGGCTACCCTGACTCTTGtaccggggta | |||||
| ******************************************************************************************************************** | ||||||
| rat | (((((....((.((((..((((((((((......(((((.......((...(((((((((........))).))))))))...)))))..)))))))))))))).))...))))). | 0.680 -47.60 | ||||
| rat | chromosome:9:57053230:57053345:-1 | intergenic ## {SimpF: oe = 0.84 0 CpG} |
sblock3210 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.571 | no | no | 0.65/0.83 | 20/24/1.00 | 2.5 0.0 0.0 0.0 | 2.5 0.0 0.0 0.0 | 2 1 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 22 36 3 | 16 1 -16 21 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.52 0.62 0.30 | 4 6 6 2 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -UUCCGGG------------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------CCUCUAG-------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------UCCUCCG------------------------------------------------ | 1 | novel | ||||
| seed | ----------------------------------------------------------------------UCGACUG--------------- | 1 | novel | ||||
| seed | ------GGAUCUG------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| ------------------------------------CTCCTCCGTCCGCGCCCGCCGGAG-------------------------------- | 24 | - | - | - | - | 1 | |
| CTTCCGGGATCTGTCAGCCGCTC--------------------------------------------------------------------- | 23 | - | 1 | - | - | - | |
| -----GGGATCTGTCAGCCGCTCCCTCT---------------------------------------------------------------- | 23 | - | - | 1 | - | - | |
| ---------------------------------------------------------------------GTCGACTGACCAGAGTCCGC--- | 20 | - | - | - | 1 | - | |
| ----------------------CCCTCTAGGCCTCCCTCCTCC------------------------------------------------- | 21 | 1 | - | - | - | - | |
| rat | CTTCCGGGATCTGTCAGCCGCTCCCTCTAGGCCTCCCTCCTCCGTCCGCGCCCGCCGGAGcctgttcgcGTCGACTGACCAGAGTCCGCgaa | ||||||
| ******************************************************************************************** | |||||||
| rat | ..(((((..((((((((.((.......((((.((((......((....))......)))))))).......)).))))).)))..))).)). | 0.910 -28.34 | |||||
| rat | chromosome:12:9839036:9839127:-1 | intergenic |
sblock4356 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.198 | no | no | 0.42/0.55 | 19/20/0.75 | 2.0 0.0 | 1.5 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 0 32 | 38 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.42 0.20 | 5 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------CUGACUG-------------------------------------------- | 2 | novel |
| seed | -----CUCUGCC----------------------------------------------------------------------------------------------------- | 1 | novel |
| seed | -CUUUCUC--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------TCTGACTGCAGTAGCTCCAG-------------------------------- | 20 | 2 | |
| TCTTTCTCTGCCTGTAGTGA--------------------------------------------------------------------------------------------- | 20 | 1 | |
| ----TCTCTGCCTGTAGTGATAA------------------------------------------------------------------------------------------ | 19 | 1 | |
| rat | TCTTTCTCTGCCTGTAGTGATAAttgaatgtgctgaagtttggtccctcagctctgtcagtTCTGACTGCAGTAGCTCCAGcttccatagcaggtccttattcttattctggg | ||
| ***************************************************************************************************************** | |||
| rat | ..........(((..(((((.(((...((.((((((((.((((......(((((((.((((....))))))).))))))))))))...)))).))....))).)))))..))) | 0.860 -27.10 |
| rat | chromosome:15:230560:230672:-1 | intergenic |
sblock5176 [novel_multiarm_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.140 | no | no | 0.57/0.62 | 21/22/1.00 | 2.5 0.0 | 3.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 41 29 | -19 -1 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.64 0.24 | 13 3 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------UGCCCGA------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------CCGGGCA-------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------CAAGGUA--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------------------------------------------GCAAGGTAGCCAAGAATGCCCG------------------------------------------- | 22 | 1 | - | |
| -----------------------------------------ACCGGGCAAGGTAGCCAAGAA------------------------------------------------- | 21 | - | 1 | |
| -------------------------------------------------------------ATGCCCGATGGGCGGGTTGTT----------------------------- | 21 | 1 | - | |
| rat | tagagtgggcggggcgccaagtcctaagcagcaaagggcgcACCGGGCAAGGTAGCCAAGAATGCCCGATGGGCGGGTTGTTgggagggtattggggcaggctgggctgtg | |||
| *************************************************************************************************************** | ||||
| rat | ((.(((.(((...((.((((..(((...((((((...((.((.((((((.............)))))).)).))...))))))..)))...)))).))..)))..))).)) | 0.420 -39.82 | ||
| rat | chromosome:17:59797129:59797239:-1 | intergenic ## {SimpF: oe = 0.79 -1 CpG} |
novel_multiarm_DicerNOK_nonpairedHIGH (20 loci)
sblock10186 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.50/0.64 | 22/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 18 14 | 6 12 | 5arm 3arm | 1 1 | nd nd | 0.32 0.36 | 3 5 | 2 | 2 | 8 | 10 |
| reads | miRBase family seed | |||
| seed | -------------------CUGGAUG-------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------AGCAUCC---------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ----------------------------------------------------------------AAGCATCCCAGGTCCCTTCCCC-------------- | 22 | - | 1 | |
| ------------------CCTGGATGATGCTCCTAGTTGT------------------------------------------------------------ | 22 | 1 | - | |
| rat | ctgctgtacaggcagagcCCTGGATGATGCTCCTAGTTGTgcccagtgccttctgggaaggtggAAGCATCCCAGGTCCCTTCCCCacctcacacagtac | |||
| **************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000031164 ENSRNOG00000028629 Akt1 | |||
| rat | .((((((..(((..(((.(((((..((((((.(((.((...(((((......))))).)).))).)))))))))))...))).....)))...)))))). | 0.940 -35.80 | ||
| rat | chromosome:6:137648357:137648456:-1 | Same_strand|Intronic_coding|ENSRNOT00000031164|ENSRNOG00000028629 ## ENSRNOG00000028629|protein_coding|Akt1|RAC-alpha serine/threonine-protein kinase (EC 2.7.11.1) (RAC-PK-alpha) (Protein kinase B) (PKB). [Source:UniProtKB/Swiss-Prot;Acc:P47196] |
sblock10984 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.148 | no | no | 0.35/0.48 | 21/23/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 22 14 | 21 5 13 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.33 0.52 0.43 | 3 4 4 | 5 | 2 | -16 | -17 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------UUUAGUC------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------------------------AGUUUCC----------------------------- | 1 | novel | |
| seed | -----AGGACAU---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -------------------------------------------------------TTTTAGTCTAGTTTCCTTTCCCT---------------------- | 23 | 3 | - | |
| ---------------------------------------------------------------TAGTTTCCTTTCCCTATGACCAG-------------- | 23 | - | 1 | |
| ----TAGGACATCTGGGGTATAGTG--------------------------------------------------------------------------- | 21 | 1 | - | |
| rat | gctgTAGGACATCTGGGGTATAGTGggattcggggcacctttgggcccaggcctcTTTTAGTCTAGTTTCCTTTCCCTATGACCAGctttccccccagtc | |||
| **************************************************************************************************** | ||||
| rat | ((((..(((...((((..(((((.((((....((((......((((....))))......))))....))))....))))).))))...)))...)))). | 0.540 -30.20 | ||
| rat | chromosome:7:116621285:116621384:-1 | intergenic |
sblock11006 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.647 | no | no | 0.65/0.70 | 23/23/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 25 15 | 8 13 | 5arm 3arm | 1 1 | nd nd | 0.35 0.35 | 3 3 | 3 | 2 | 9 | 7 |
| reads | miRBase family seed | |||
| seed | --------------------------GCUCUGC---------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------------------AGGUGGC------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S2 | |||
| -------------------------CGCTCTGCCTCCTGCTCGACCGT------------------------------------------------------------------- | 23 | 2 | - | |
| -----------------------------------------------------------------------------CAGGTGGCTGTGAAGGGGTGACG--------------- | 23 | - | 1 | |
| rat | tcggcctcaggtgcgcgtgcccgccCGCTCTGCCTCCTGCTCGACCGTgcgcggcccaggtggcggcccgcaaggtcCAGGTGGCTGTGAAGGGGTGACGagcggtcccggccgg | |||
| ******************************************************************************************************************* | ||||
| rat | .(((((...((..(((.((..(((((..((.(((.((((...((((.((((.((((........)))))))).)))))))).)))...))..))))).)).)))..)).))))). | 1.000 -58.50 | ||
| rat | chromosome:7:117930775:117930889:-1 | intergenic |
sblock11407 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.808 | no | no | 0.67/0.74 | 23/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 21 18 | 2 5 | 5arm 3arm | 1 1 | nd nd | 0.35 0.33 | 4 3 | 2 | 1 | 3 | 6 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------CAGAGAC---------------------------------- | 1 | novel |
| seed | ----------------------CGGUCGC---------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ---------------------ACGGTCGCCGCGCACTTCCGGAG------------------------------------------------------- | 23 | 1 | |
| ---------------------------------------------------------TCAGAGACCGGCGACCCTACGCAC------------------ | 24 | 1 | |
| rat | ccaagctgcgcacgcgcgggtACGGTCGCCGCGCACTTCCGGAGcttctttagggtcTCAGAGACCGGCGACCCTACGCACgggctgggcgggactcgg | ||
| *************************************************************************************************** | |||
| rat | .....((((.((.((.((.(((.((((((((....(((..(((.((......)).)))..)))..)))))))).)))...)).)))).))))....... | 0.460 -39.10 |
| rat | chromosome:7:114926638:114926736:1 | intergenic |
sblock12024 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.597 | no | no | 0.57/0.65 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 17 21 | 14 6 | 5arm 3arm | 1 1 | nd nd | 0.40 0.33 | 4 3 | 2 | 2 | -2 | -2 |
| reads | miRBase family seed | |||
| seed | ------------------GGGAGGA------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------------GAAGUGG---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S2 | |||
| -------------------------------------------------------------------GGAAGTGGACCACTGTACTCC--------------------- | 21 | 1 | - | |
| -----------------GGGGAGGAGTTTCCCCACAC------------------------------------------------------------------------ | 20 | - | 1 | |
| rat | gggctctcatcaaagatGGGGAGGAGTTTCCCCACACccatccttacctgataatctagcctcacaaGGAAGTGGACCACTGTACTCCcctatgcactctatggactcc | |||
| ************************************************************************************************************* | ||||
| rat | ((..((.(((.......((((((.(((....((((.....(((((...(((..........))).))))).))))...)))...))))))..........)))))..)) | 0.530 -22.53 | ||
| rat | chromosome:8:64513496:64513604:1 | intergenic |
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