other hairpins
novel_multiarm_DicerNOK_nonpairedHIGH (20 loci)
sblock7710 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.346 | no | no | 0.38/0.44 | 21/25/0.75 | 0.3 0.0 | 1.3 0.0 | 3 1 | 0 0 | 1 1 | 0 0 | 9 11 | 7 4 | 5arm 3arm | 2 2 | nd nd | 0.32 0.36 | 3 4 | 4 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | ----------CACAAAG-------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------AGGUCGU---------------------------- | 1 | novel | |
| seed | -----------ACAAAGU------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ----------CACAAAGTTCTGTTGAAGTCCTG---------------------------------------------------- | 23 | - | 1 | |
| ---------TCACAAAGTTCTGTTGAAGTCC------------------------------------------------------ | 22 | - | 1 | |
| ---------TCACAAAGTTCTGTTGAAGTC------------------------------------------------------- | 21 | - | 1 | |
| -------------------------------------------------TAGGTCGTCACAGTTATCTTTCTGG----------- | 25 | 1 | - | |
| rat | gcagtcacaTCACAAAGTTCTGTTGAAGTCCTGccaaggcactctgcttTAGGTCGTCACAGTTATCTTTCTGGaaaggccagca | |||
| ************************************************************************************* | ||||
| rat | ((.(((...(((.((((..(((.(((...((((...((((.....))))))))...))))))....)))).)))...)))..)). | 0.480 -19.20 | ||
| rat | chromosome:3:141690386:141690470:-1 | intergenic |
sblock8164 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.477 | no | no | 0.46/0.57 | 23/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 6 17 | 10 3 | 5arm 3arm | 1 1 | nd nd | 0.38 0.35 | 4 3 | 2 | 1 | -7 | -8 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------UGCUGUG-------------------------------- | 1 | novel |
| seed | -------GCAAGCA---------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------AGCAAGCACCACTAAAGACAAGAC------------------------------------------------------------ | 24 | 1 | |
| --------------------------------------------------ATGCTGTGGAAGTCAGAGCCTGG----------------- | 23 | 1 | |
| rat | ctagaaAGCAAGCACCACTAAAGACAAGACacagtgagctggagagaggtATGCTGTGGAAGTCAGAGCCTGGgaactttgccctcaggg | ||
| ****************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------- | ENSRNOT00000028883 ENSRNOG00000021261 Rassf2 | ||
| rat | ((.((..(((((..(((((...(((....(((((((.(((.......))).)))))))...)))..))..)))....)))))..)).)). | 0.660 -21.10 |
| rat | chromosome:3:119767753:119767842:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000028883|ENSRNOG00000021261 ## ENSRNOG00000021261|protein_coding|Rassf2|Ras association domain-containing protein 2. [Source:UniProtKB/Swiss-Prot;Acc:Q3B7D5] |
sblock8727 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.253 | no | no | 0.38/0.58 | 19/23/0.80 | 0.0 0.0 0.3 | 0.0 0.0 0.0 | 1 1 3 | 0 0 0 | 1 1 1 | 0 0 0 | 27 33 28 | 13 5 1 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.43 0.43 0.32 | 5 5 3 | 5 | 1 | -5 | -3 |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------AGAAGAC---------------------------------------- | 2 | novel |
| seed | ------------------------------------------------------------------------GAAGACC--------------------------------------- | 1 | novel |
| seed | ----------------------------AUGCAUG----------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------GUGAAGA----------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----------------------------------------------------------------------TAGAAGACCCCAGAGCACAC---------------------------- | 20 | 2 | |
| -----------------------------------------------------------------------AGAAGACCCCAGAGCACAC---------------------------- | 19 | 1 | |
| ---------------------------TATGCATGTGAAGAATGTGTC---------------------------------------------------------------------- | 21 | 1 | |
| ---------------------------------TGTGAAGAATGTGTCCTGGGCTC-------------------------------------------------------------- | 23 | 1 | |
| rat | ctgaaggaagcattgcttcagaccattTATGCATGTGAAGAATGTGTCCTGGGCTCgtgacagacaagggTAGAAGACCCCAGAGCACACgatggagtgagtggctgtggctgccagg | ||
| ********************************************************************************************************************** | |||
| rat | (((......(((..((..(((.((((((((.(((.((.....((((..(((((.((...((........))....)).)))))..)))))))))..)))))))))))..)))))))). | 0.890 -35.90 |
| rat | chromosome:4:164233629:164233746:-1 | intergenic |
sblock9452 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.617 | no | no | 0.38/0.45 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 17 18 | 0 6 | 5arm 3arm | 1 1 | nd nd | 0.38 0.35 | 3 3 | 2 | 2 | 7 | 1 |
| reads | miRBase family seed | |||
| seed | ------------------AGCAGUA---------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------GUGGUUA------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------TGTGGTTAGGCATCTGATGA------------------ | 20 | 1 | - | |
| -----------------TAGCAGTAGCAACAACAGGAATTT------------------------------------------------ | 24 | - | 1 | |
| rat | atgactgggtggaacttTAGCAGTAGCAACAACAGGAATTTaaaaagataaTGTGGTTAGGCATCTGATGAagcctgcaactgggtggt | |||
| ***************************************************************************************** | ||||
| rat | ((.(((.(((....(((((.(((..((.((.(((...((((....))))..))).))...))..))).)))))......))).))).)) | 0.540 -15.90 | ||
| rat | chromosome:5:114563125:114563213:-1 | intergenic |
sblock9874 [novel_multiarm_DicerNOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.051 | no | no | 0.50/0.50 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 12 | 8 2 | 5arm 3arm | 9 9 | nd nd | 0.35 0.36 | 3 3 | 2 | 1 | -5 | -6 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------GUAGAAA-------------------------- | 1 | novel |
| seed | ---------AUGGUAG------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------CATGGTAGACAATGAGGCCA------------------------------------------------ | 20 | 1 | |
| ------------------------------------------CGTAGAAACCTCGACATTGAGC------------ | 22 | 1 | |
| rat | tgtgccttCATGGTAGACAATGAGGCCAtctatgacatctgtCGTAGAAACCTCGACATTGAGCgccagcctacac | ||
| **************************************************************************** | |||
| rat | .(((......((((...((((((((...((((((((....))))))))..))))...))))...)))).....))) | 0.470 -21.40 |
| rat | chromosome:5:162120327:162120402:1 | intergenic |
novel_multiarm_DicerNOK_shortStem (20 loci)
sblock11023 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.50/0.57 | 22/24/1.00 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 2 17 | 12 9 | 5arm 3arm | 1 1 | nd nd | 0.30 0.41 | 3 3 | 6 | 2 | -7 | -10 |
| reads | miRBase family seed | |||
| seed | ---AACAGCA-------------------------------------------------------------------------------- | 5 | miR-21* | |
| seed | ----------------------------------------------------CUGCUAG------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| --GAACAGCAGTCAGGGTTGCCCAA----------------------------------------------------------------- | 23 | - | 4 | |
| --GAACAGCAGTCAGGGTTGCCCAAA---------------------------------------------------------------- | 24 | - | 1 | |
| ---------------------------------------------------TCTGCTAGTGTAAGTGACCCAC----------------- | 22 | 1 | - | |
| rat | caGAACAGCAGTCAGGGTTGCCCAAagtgcagctgccaccagggcattttctctgctagtgtaagtgacccacattgatgaatggtctga | |||
| ****************************************************************************************** | ||||
| rat | ((((.((...(((((((((((.((....((((.((((.....))))......))))...))...)))))))....))))...)).)))). | 0.500 -26.20 | ||
| rat | chromosome:7:121156607:121156696:-1 | intergenic |
sblock1125 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.45/0.45 | 20/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 0 | 27 23 | 5arm 3arm | 1 1 | nd nd | 0.50 0.26 | 4 2 | 2 | 2 | -5 | -4 |
| reads | miRBase family seed | |||
| seed | -ACCUGCC------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------------------------CAUGGAA------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| ------------------------------------------------------------------------------CCATGGAAGTTTTAGTGGTG | 20 | - | 1 | |
| AACCTGCCATTTTGTAAGCCTG---------------------------------------------------------------------------- | 22 | 1 | - | |
| rat | AACCTGCCATTTTGTAAGCCTGccattgctaccctgaaggcgcacggctgtaagtggctggtgtgttcacggatcacgCCATGGAAGTTTTAGTGGTG | |||
| ************************************************************************************************** | ||||
| rat | .....((((((....((((...((((.((..((.((((.((((.(((((......))))))))).)))).)).....)).))))..)))).)))))). | 0.910 -33.10 | ||
| rat | chromosome:1:265826927:265827024:-1 | intergenic |
sblock11580 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.187 | no | no | 0.43/0.55 | 20/23/1.00 | 0.0 0.0 0.0 | 1.0 0.0 0.0 | 5 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 18 41 | 20 6 8 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.00 0.26 0.30 | 0 4 3 | 7 | 1 | -10 | -15 |
| reads | miRBase family seed | ||
| seed | -----GGGAUUG------------------------------------------------------------------------------------------------------------ | 5 | novel |
| seed | -------------------UGCUGUC---------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------GUGAGCU----------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----TGGGATTGCTGCTCATGCTGTCT--------------------------------------------------------------------------------------------- | 23 | 2 | |
| ----TGGGATTGCTGCTCATGCTGT----------------------------------------------------------------------------------------------- | 21 | 2 | |
| -----------------------------------------------------------TGTGAGCTCTGAATGCGGCA----------------------------------------- | 20 | 1 | |
| ----TGGGATTGCTGCTCATGCTG------------------------------------------------------------------------------------------------ | 20 | 1 | |
| ------------------ATGCTGTCTAGGGAACCAGTTTT------------------------------------------------------------------------------- | 23 | 1 | |
| rat | cctgTGGGATTGCTGCTCATGCTGTCTAGGGAACCAGTTTTatcctctgctgagcactgTGTGAGCTCTGAATGCGGCAtgggtagggtaggtgggtattcagtccctgtagcagacagg | ||
| ************************************************************************************************************************ | |||
| rat | (((((((((((((((((((((((((.(((((.((((((......(((....))).)))).))...)))))...)))))))))))))..............)))))))........))))) | 0.450 -41.23 |
| rat | chromosome:8:47133539:47133658:-1 | intergenic |
sblock12017 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.854 | no | no | 0.58/0.75 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 0 | 15 2 | 5arm 3arm | 1 1 | nd nd | 0.55 0.26 | 7 3 | 2 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --UGCGUGA--------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------GCUCACA---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| -CTGCGTGAGTCCGGCCCCCA--------------------------------------------- | 20 | - | 1 | |
| ------------------------------------------AGCTCACACCGGCTTCTCTTCAGC | 24 | 1 | - | |
| rat | gCTGCGTGAGTCCGGCCCCCAagaactgctgtgccgcccgcgAGCTCACACCGGCTTCTCTTCAGC | |||
| ****************************************************************** | ||||
| rat | ((((...(((.((((...........((.((.((((....)).)).))))))))...)))..)))) | 0.780 -17.00 | ||
| rat | chromosome:8:61264890:61264955:1 | intergenic |
sblock12195 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.788 | no | no | 0.48/0.80 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 0 1 | 12 6 | 5arm 3arm | 1 1 | nd nd | 0.45 0.24 | 3 2 | 2 | 2 | -8 | -3 |
| reads | miRBase family seed | |||
| seed | -GCCGUCG------------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------UCGGAGG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------TTCGGAGGTTACCTTAGCAAG- | 21 | 1 | - | |
| GGCCGTCGCTGACCGGGCGA------------------------------------------------ | 20 | - | 1 | |
| rat | GGCCGTCGCTGACCGGGCGAtccttctcctgcaggaaaacgtaggcTTCGGAGGTTACCTTAGCAAGg | |||
| ******************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000039480 ENSRNOG00000023467 LOC679302 | |||
| rat | ..((...((((...(((.((.(((((.(((((........)))))....))))))).)))))))..)) | 0.790 -18.30 | ||
| rat | chromosome:9:33574012:33574079:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000039480|ENSRNOG00000023467 ## ENSRNOG00000023467|protein_coding|LOC679302| |
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