other hairpins
novel_multiarm_DicerNOK_shortStem (20 loci)
sblock6685 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.40/0.60 | 19/20/0.75 | 0.3 0.0 | 0.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 0 0 | 22 4 | 5arm 3arm | 1 1 | nd nd | 0.89 0.21 | 17 2 | 4 | 2 | 0 | -17 |
| reads | miRBase family seed | |||
| seed | -GACAAAC----------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------UCCCUCC------------ | 1 | novel | |
| seed | --ACAAACC---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| AGACAAACCTTTAAGCTCAG----------------------------------------------------- | 20 | - | 2 | |
| -----------------------------------------------------TTCCCTCCTTCCCAGGCTAC | 20 | 1 | - | |
| -GACAAACCTTTAAGCTCAG----------------------------------------------------- | 19 | 1 | - | |
| rat | AGACAAACCTTTAAGCTCAGgcggggatgggaggggaggtggggggatgtcgcTTCCCTCCTTCCCAGGCTAC | |||
| ************************************************************************* | ||||
| rat | ...................(((.((((.((((.(((((((((.......)))))))))))))))))..))).. | 0.610 -28.60 | ||
| rat | chromosome:20:5500487:5500559:-1 | intergenic |
sblock7448 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.021 | no | no | 0.55/0.58 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 2 | 3 7 | 5arm 3arm | 1 1 | nd nd | 0.25 0.25 | 2 2 | 2 | 2 | 3 | 0 |
| reads | miRBase family seed | |||
| seed | ---UAUGCAG--------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------CUGCCUG-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ---------------------------------------ACTGCCTGGACTTGCAGAAC-- | 20 | 1 | - | |
| --GTATGCAGTGCCTGGCATGGTGTC----------------------------------- | 24 | - | 1 | |
| rat | agGTATGCAGTGCCTGGCATGGTGTCctgaggtagaggcACTGCCTGGACTTGCAGAACct | |||
| ************************************************************* | ||||
| rat | ((((.(((((..((.(((..(((((((((...))).))))))))).))..)))))..)))) | 1.000 -24.50 | ||
| rat | chromosome:3:6142531:6142591:-1 | intergenic |
sblock8039 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.29/0.48 | 20/25/0.88 | 0.0 0.0 0.0 0.6 | 0.0 0.0 0.0 1.2 | 1 1 1 5 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 1 10 30 0 | 25 16 -6 25 | 5arm 5arm 5arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.30 0.52 0.48 | 3 2 7 5 | 8 | 3 | -18 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------------CUACUUA---------------- | 4 | novel | ||
| seed | -----------AAUACCC---------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------------------------------AGUCUAC------------------- | 1 | novel | ||
| seed | -------------------------------AGCCUCA-------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --CUAAGCU------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------------------------------------------------------------TCTACTTACTTTGGTTTTCA---- | 20 | - | 2 | 1 | |
| -------------------------------------------------------------------------------------------CAGTCTACTTACTTTGGTTTT------ | 21 | 1 | - | - | |
| ------------------------------CAGCCTCACACATGTTGTTCTCCTT--------------------------------------------------------------- | 25 | 1 | - | - | |
| ----------------------------------------------------------------------------------------------TCTACTTACTTTGGTTTTCATTAC | 24 | - | - | 1 | |
| ----------TAATACCCTAGCAGCTTGTGCAG------------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| -CCTAAGCTATAATACCCTAGCAG---------------------------------------------------------------------------------------------- | 23 | - | - | 1 | |
| rat | tCCTAAGCTATAATACCCTAGCAGCTTGTGCAGCCTCACACATGTTGTTCTCCTTtttaaaaaaaaaataacaaagggcttggatgtgctgCAGTCTACTTACTTTGGTTTTCATTAC | ||||
| ********************************************************************************************************************** | |||||
| rat | .((.(((.((...((..((.(((((.(((.((((((......(((((((.................)))))))..)))).)).))).)))))))..))..))))).)).......... | 0.830 -20.83 | |||
| rat | chromosome:3:76961989:76962106:1 | intergenic |
sblock8117 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.43/0.45 | 20/23/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 4 4 | 8 18 | 5arm 3arm | 1 1 | nd nd | 0.22 0.40 | 3 3 | 2 | 2 | 6 | 2 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------CACCUUU---------------- | 1 | novel | |
| seed | -----UGUGGUC-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------TCACCTTTGGACTTACAGGA---- | 20 | - | 1 | |
| ----ATGTGGTCTTTCGGTTAAGGTGA----------------------------------------------------- | 23 | 1 | - | |
| rat | gcatATGTGGTCTTTCGGTTAAGGTGAtattgcgggccctgttatgtaacttgcctTCACCTTTGGACTTACAGGAatga | |||
| ******************************************************************************** | ||||
| rat | .(((.((((((((...(((.(((((.((((.((((...)))).)))).....))))).)))...))))).)))...))). | 1.000 -20.20 | ||
| rat | chromosome:3:106115730:106115809:1 | intergenic |
sblock8119 [novel_multiarm_DicerNOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.496 | no | no | 0.35/0.60 | 18/20/0.83 | 0.0 0.0 0.0 | 0.0 0.0 0.5 | 1 1 4 | 0 0 0 | 1 1 2 | 0 0 0 | 22 11 0 | 4 24 35 | 5arm 3arm 3arm | 2 3 3 | nd nd nd | 0.30 0.50 0.56 | 2 5 5 | 6 | 4 | 0 | -14 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------------------------------------CUUCUUG------------ | 4 | novel | |||
| seed | -----------------------CAAAGCU------------------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------------------------------------------------------------GGUCAAU----------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S2 | T5S1 | |||
| ----------------------------------------------------------------------------------------------ACTTCTTGATCCGGAAGCGA | 20 | - | 3 | - | - | |
| ----------------------------------------------------------------------------------------------ACTTCTTGATCCGGAAGC-- | 18 | - | - | 1 | - | |
| ----------------------CCAAAGCTCGGATAGGGGAC------------------------------------------------------------------------ | 20 | 1 | - | - | - | |
| -----------------------------------------------------------------------------------TGGTCAATTCTACTTCTTGA----------- | 20 | - | - | - | 1 | |
| rat | ccggtgatagtggagaaagctcCCAAAGCTCGGATAGGGGACctggacaaaaagaaatacctgttgccttctgatcttacagtTGGTCAATTCTACTTCTTGATCCGGAAGCGA | |||||
| ****************************************************************************************************************** | ||||||
| rat | ((((.((.((((((((.((((....(((.(((((.(((.(((..((.............)).))).)))))))).)))..))))..))...)))))))).....))))...... | 0.790 -27.92 | ||||
| rat | chromosome:3:106371830:106371943:1 | intergenic |
novel_cloningOK_shortStem (19 loci)
block105946 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.026 | no | no | 0.47/0.50 | 19/20/0.75 | 0.0 | 0.0 | 24 | 0 | 7 | 0 | 2 | 30 | 5arm | 1 | nd | 0.25 | 2 | 40 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---GGGGUGG---------------------------------------------------------------------------------------------- | 40 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| --TGGGGTGGTTTTTTTTCCCC---------------------------------------------------------------------------------- | 20 | 17 | 1 | 7 | 1 | 1 | 1 | 2 | |
| --TGGGGTGGTTTTTTTTCCC----------------------------------------------------------------------------------- | 19 | 4 | - | 2 | - | - | 2 | 2 | |
| rat | ctTGGGGTGGTTTTTTTTCCCCtgccgtgagaaagtctacagcttgtcagagctttcctttgatatagcaggctgcttagtcagggacagagggcagctctgag | ||||||||
| ******************************************************************************************************** | |||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005687 ENSRNOG00000004049 Baiap2 | ||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000005738 ENSRNOG00000004049 Baiap2 | ||||||||
| rat | ((..((((.(((((((.((((..((..((((..(((((...(((((((((((.....)))))))).)))))))).))))))..)))).))))))).))))..)) | 0.990 -36.50 | |||||||
| rat | chromosome:10:109375639:109375742:1 | Same_strand|Intronic_coding|ENSRNOT00000005738|ENSRNOG00000004049 ## ENSRNOG00000004049|protein_coding|Baiap2|brain-specific angiogenesis inhibitor 1-associated protein 2 Gene [Source:MGI (curated);Acc:Baiap2-005] ## {Repeats: dust 109375649 109375656 0 class=dust} |
block691710 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.255 | no | no | 0.26/0.30 | 19/21/0.70 | 0.0 | 0.4 | 10 | 0 | 5 | 0 | 1 | 16 | 3arm | 1 | nd | 0.19 | 3 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------AGAAAAU-------------- | 10 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------AAGAAAATATGGTTCTTGAC-- | 20 | 1 | 1 | 1 | 3 | - | |
| ------------------------------------------------------AAGAAAATATGGTTCTTGA--- | 19 | - | 1 | - | 1 | 1 | |
| ------------------------------------------------------AAGAAAATATGGTTCTTGACT- | 21 | 1 | - | - | - | - | |
| rat | taggtccagcctgttttgctatgtaattcctgttttcaaacttttatacatttaAAGAAAATATGGTTCTTGACTt | ||||||
| **************************************************************************** | |||||||
| rat | .(((((.((((((((((.(((((((......(((....))).....)))))....)))))))).))))...))))) | 0.970 -10.90 | |||||
| rat | chromosome:18:20870836:20870911:-1 | intergenic |
block822167 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.989 | no | no | 0.50/0.53 | 19/24/0.91 | 0.5 | 1.3 | 11 | 0 | 3 | 0 | 0 | 5 | 5arm | 1 | nd | 0.27 | 3 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -GUGCAUG---------------------------------------------------------------------- | 6 | novel | ||
| seed | --UGCAUGA--------------------------------------------------------------------- | 5 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T3S2 | T5S1 | |||
| -GTGCATGATGTTGCCTGACA--------------------------------------------------------- | 20 | - | 3 | - | |
| AGTGCATGATGTTGCCTGACAC-------------------------------------------------------- | 22 | 2 | 1 | - | |
| AGTGCATGATGTTGCCTGACACTG------------------------------------------------------ | 24 | - | 1 | 2 | |
| -GTGCATGATGTTGCCTGACAC-------------------------------------------------------- | 21 | - | 1 | - | |
| -GTGCATGATGTTGCCTGAC---------------------------------------------------------- | 19 | - | 1 | - | |
| rat | AGTGCATGATGTTGCCTGACACTGtggaaatgttgaaaattgtgtagttctgaaagtggagtcaatgctggtcaaact | ||||
| ****************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000014492 ENSRNOG00000010744 Nrp1 | ||||
| rat | (((...((((((((.((..((((..((((..................))))...)))).)).))))....)))).))) | 0.460 -8.97 | |||
| rat | chromosome:19:58399483:58399560:1 | Same_strand|Intronic_coding|ENSRNOT00000014492|ENSRNOG00000010744 ## ENSRNOG00000010744|protein_coding|Nrp1|Neuropilin-1 precursor (Vascular endothelial cell growth factor 165 receptor). [Source:UniProtKB/Swiss-Prot;Acc:Q9QWJ9] |
block1121976 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.032 | no | no | 0.52/0.55 | 19/21/0.90 | 0.0 | 0.1 | 14 | 0 | 8 | 0 | 0 | 4 | 3arm | 1 | nd | 0.15 | 2 | 20 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------UCCAGUU------------- | 20 | miR-145 | |||||||
| len | cloning frequencies | |||||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------GTCCAGTTTTCCAGGAACCC- | 20 | 1 | - | 2 | 1 | 2 | 5 | 3 | 1 | |
| ------------------------------------------GTCCAGTTTTCCAGGAACCCT | 21 | - | - | - | - | 1 | 2 | - | - | |
| ------------------------------------------GTCCAGTTTTCCAGGAACC-- | 19 | - | 1 | - | - | 1 | - | - | - | |
| rat | cagtggtccttaagggaaactgcctggggcctagcaaattcaGTCCAGTTTTCCAGGAACCCT | |||||||||
| *************************************************************** | ||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000057016 ENSRNOG00000037604 NP_001101110.1 | |||||||||
| rat | .((.((((((...(((((((((.(((((..........)))))..))))))))))))).)))) | 1.000 -20.20 | ||||||||
| rat | chromosome:20:54848917:54848979:1 | Same_strand|Boundary_non-coding|ENSRNOT00000057015|ENSRNOG00000037604 ## Same_strand|Intronic_coding|ENSRNOT00000057016|ENSRNOG00000037604 ## ENSRNOG00000037604|protein_coding|NP_001101110.1|activating signal cointegrator 1 complex subunit 3 [Source:RefSeq_peptide;Acc:NP_001101110] |
block1600381 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.117 | no | no | 0.43/0.48 | 19/23/0.91 | 0.2 | 0.2 | 9 | 0 | 2 | 0 | 2 | 19 | 5arm | 1 | nd | 0.29 | 3 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----CCUAUCU--------------------------------------------------------------------------------------- | 8 | novel | |
| seed | ---UCCUAUC---------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------CUUGUUG---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---TCCTATCTTGTTGGCACACACA------------------------------------------------------------------------- | 22 | - | 5 | |
| ---TCCTATCTTGTTGGCACACAC-------------------------------------------------------------------------- | 21 | - | 2 | |
| --TTCCTATCTTGTTGGCACACACA------------------------------------------------------------------------- | 23 | - | 2 | |
| ---TCCTATCTTGTTGGCACAC---------------------------------------------------------------------------- | 19 | 1 | - | |
| --------TCTTGTTGGCACACACATTCCCT------------------------------------------------------------------- | 23 | - | 1 | |
| rat | tgTTCCTATCTTGTTGGCACACACAttccctatctttctctcataatctttctctttaaagtgagagtttgtcttagtgttctttaaagaagtcacaa | |||
| ************************************************************************************************** | ||||
| rat | (((..((.((((...((.(((((((............(((((((................)))))))..)))....)))).))...))))))..))). | 0.780 -15.23 | ||
| rat | chromosome:4:164236201:164236298:-1 | intergenic |
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