other hairpins
novel_cloningOK_shortStem (19 loci)
block1093447 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.131 | no | no | 0.57/0.59 | 19/23/0.90 | 0.4 | 0.0 | 7 | 0 | 2 | 0 | 3 | 27 | 3arm | 1 | nd | 0.26 | 2 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------------------GGGAGAC----------------- | 6 | novel | |
| seed | ------------------------------------------------------------------------------------------UGGGAGA------------------ | 4 | miR-30c | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------------------------------------------TGGGAGACACTCTGGTGGACAC--- | 22 | 1 | 4 | |
| -----------------------------------------------------------------------------------------TTGGGAGACACTCTGGTGGACAC--- | 23 | - | 3 | |
| -----------------------------------------------------------------------------------------TTGGGAGACACTCTGGTGGAC----- | 21 | - | 1 | |
| ------------------------------------------------------------------------------------------TGGGAGACACTCTGGTGGA------ | 19 | 1 | - | |
| rat | gtggttctctgagaattctcgacagtgggcactgtcaaccatctatgttaaggacttgggagcttggcaattgatgattggccaaacccTTGGGAGACACTCTGGTGGACACgca | |||
| ******************************************************************************************************************* | ||||
| rat | (((((((.(((((...((((..(((.(((....(((((.((((..(((((((..........)))))))...)))).)))))....)))))).))))..))).)).)))).))). | 0.960 -36.20 | ||
| rat | chromosome:20:5535609:5535723:1 | intergenic |
block1093718 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.086 | no | no | 0.32/0.45 | 18/23/0.85 | 0.0 | 0.0 | 17 | 0 | 4 | 0 | 1 | 40 | 5arm | 1 | nd | 0.30 | 2 | 26 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | --GAGCAAC--------------------------------------------------------------------------------------------------------------- | 21 | novel | |||
| seed | -----CAACAAG------------------------------------------------------------------------------------------------------------ | 4 | novel | |||
| seed | -------ACAAGCA---------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S1 | T5S1 | |||
| -TGAGCAACAAGCATTGTGGA--------------------------------------------------------------------------------------------------- | 20 | 2 | 2 | - | 17 | |
| ----GCAACAAGCATTGTGGATA------------------------------------------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ----GCAACAAGCATTGTGGAT-------------------------------------------------------------------------------------------------- | 18 | - | - | 1 | - | |
| ----GCAACAAGCATTGTGGATAATAC--------------------------------------------------------------------------------------------- | 23 | - | - | - | 1 | |
| ------AACAAGCATTGTGGATAAT----------------------------------------------------------------------------------------------- | 19 | - | - | - | 1 | |
| rat | cTGAGCAACAAGCATTGTGGAtaatacaggaggaggagaaataggagtgggacaaggactccaaaagggacctggctcacgcccagcttacttcccgttcttccttaaagcgttgcccac | |||||
| ************************************************************************************************************************ | ||||||
| rat | .((.(((((..((.(((.(((....((.(((((..(((.....((.(((((...(((.(((.....))).)))..))))).))...))).))))).))...))).))).))))))).)). | 0.530 -36.90 | ||||
| rat | chromosome:20:5546075:5546194:1 | intergenic |
block1094033 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.289 | no | no | 0.42/0.53 | 18/22/0.74 | 0.0 0.0 | 0.0 0.0 | 12 1 | 0 0 | 3 1 | 0 0 | 2 12 | 21 12 | 5arm 5arm | 1 1 | nd nd | 0.25 0.26 | 2 2 | 19 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---GAGCAAC------------------------------------------------------------------------------------------ | 17 | novel | ||
| seed | -------------AACAAAC-------------------------------------------------------------------------------- | 1 | miR-495 | ||
| seed | -CUGAGCA-------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --TGAGCAACAGGAACAAACTG------------------------------------------------------------------------------ | 20 | 1 | - | 12 | |
| --TGAGCAACAGGAACAAAC-------------------------------------------------------------------------------- | 18 | 1 | - | 1 | |
| TCTGAGCAACAGGAACAAA--------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------------GAACAAACTGCTGGAGCCA--------------------------------------------------------------------- | 19 | - | - | 1 | |
| --TGAGCAACAGGAACAAACT------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --TGAGCAACAGGAACAAACTGCT---------------------------------------------------------------------------- | 22 | - | 1 | - | |
| rat | tcTGAGCAACAGGAACAAACTGctggagccaacatgtggccaggcccctgccatgccttggcctgaaaagtttctgtcctgcaaaatggtgtaaggtcgg | ||||
| **************************************************************************************************** | |||||
| rat | .(((((((.(((((..(((((..(((.(((((..(((((.(((....))))))))..))))))))...)))))...)))))........)))....)))) | 0.510 -28.20 | |||
| rat | chromosome:20:5556439:5556538:1 | intergenic |
block881609 [novel_cloningOK_shortStem]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.085 | no | no | 0.32/0.47 | 19/23/0.84 | 0.0 0.0 | 1.3 0.0 | 18 2 | 0 0 | 5 1 | 0 0 | 4 12 | 9 5 | 5arm 5arm | 1 1 | nd nd | 0.20 0.37 | 3 3 | 31 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----GCUGUUU---------------------------------------------------------------------------- | 26 | novel | ||||
| seed | -------------AUGAUGG-------------------------------------------------------------------- | 2 | novel | ||||
| seed | --------GUUUUAU------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------CUGUUUU--------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T5S1 | |||
| ----TGCTGTTTTATGATGGATGTTGG------------------------------------------------------------- | 23 | 1 | 1 | - | - | 10 | |
| ----TGCTGTTTTATGATGGATGT---------------------------------------------------------------- | 20 | 2 | - | 1 | - | 8 | |
| ------------TATGATGGATGTTGGCTCC--------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| -------TGTTTTATGATGGATGTTG-------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| ----TGCTGTTTTATGATGGATGTT--------------------------------------------------------------- | 21 | - | - | - | - | 2 | |
| ----TGCTGTTTTATGATGGATG----------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| -----GCTGTTTTATGATGGATGTTGG------------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| rat | cacaTGCTGTTTTATGATGGATGTTGGctccaacctcatgtaagtgttgctccccaacaatataagtggtgagacatccgcactgtga | ||||||
| **************************************************************************************** | |||||||
| -------------------------------------------------------------------------------------------------- | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | ||||||
| rat | (((((((((((((((.((...((((((...((((((......)).))))....))))))......)).))))))))...))).)))). | 0.680 -23.60 | |||||
| rat | chromosome:1:129023782:129023869:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (19 loci)
block1574981 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.38/0.55 | 19/25/0.63 | 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 3.0 | 1 1 1 1 6 2 | 0 0 0 0 0 0 | 1 1 1 1 2 1 | 0 0 0 0 0 0 | 31 38 43 50 36 26 | -3 -9 -13 -8 2 10 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.57 0.65 0.68 0.74 0.43 0.32 | 5 8 8 7 5 4 | 19 | 3 | 5 | 8 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------CAUUUCC--------------------------------------------------- | 6 | novel | ||
| seed | ----------------------------------------------------------GGCAUUU----------------------------------------------------- | 4 | novel | ||
| seed | --------------------------------------------------------------------GACUAUU------------------------------------------- | 2 | novel | ||
| seed | --------------------------------UAGUAAU------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CUUCCUG------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------UUCCUGA------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------GGUCUCU------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------GAAUGAU------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------GGGCAUU------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------UCCUGAC----------------------------------------------- | 1 | miR-378* | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -----------------------------------------------------------GCATTTCCTGACTATTGGCCAGA------------------------------------ | 23 | - | - | 6 | |
| --------------------------------------------------------TGGGCATTTCCTGACTATTG------------------------------------------ | 20 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCCAG------------------------------------- | 24 | - | 1 | - | |
| -------------------------------------------------------------------TGACTATTGGCCAGATCCTGAATGA-------------------------- | 25 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCCAGA------------------------------------ | 25 | - | - | 1 | |
| -------------------------------------------------------------------TGACTATTGGCCAGATCCT-------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------TTCCTGACTATTGGCCAGA------------------------------------ | 19 | - | - | 1 | |
| -------------------------------TTAGTAATGGTCTCTTCCTGA------------------------------------------------------------------ | 21 | 1 | - | - | |
| -------------------------------------------TCTTCCTGAATGATGGGCA-------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCC--------------------------------------- | 22 | - | - | 1 | |
| -------------------------------------------------TGAATGATGGGCATTTCCT-------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TTTCCTGACTATTGGCCAGA------------------------------------ | 20 | - | - | 1 | |
| --------------------------------------TGGTCTCTTCCTGAATGATG------------------------------------------------------------ | 20 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTG------------------------------------------ | 19 | - | - | 1 | |
| rat | ggaggctggacctgccatctcgtgctggccattagtaatggtctcttcctgaatgatggGCATTTCCTGACTATTGGCCAGAtcctgaatgatggcctcttcctgtgtgagggcctct | ||||
| ********************************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||||
| rat | ((((((((((...(((((((((..(((((((.((((...((.....(((........))).....))..)))).)))))))....)))..))))))....)))........))))))) | 0.560 -43.70 | |||
| rat | chromosome:4:119284933:119285050:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| ## {Repeats: trf 64 118 0 class=trf} |
block1575151 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.38/0.55 | 19/25/0.63 | 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 3.0 | 1 1 1 1 6 2 | 0 0 0 0 0 0 | 1 1 1 1 2 1 | 0 0 0 0 0 0 | 31 38 43 50 36 26 | -3 -9 -13 -8 2 10 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.57 0.65 0.68 0.74 0.43 0.32 | 5 8 8 7 5 4 | 19 | 3 | 5 | 8 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------CAUUUCC--------------------------------------------------- | 6 | novel | ||
| seed | ----------------------------------------------------------GGCAUUU----------------------------------------------------- | 4 | novel | ||
| seed | --------------------------------------------------------------------GACUAUU------------------------------------------- | 2 | novel | ||
| seed | --------------------------------UAGUAAU------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------CUUCCUG------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------UUCCUGA------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------GGUCUCU------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------GAAUGAU------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------GGGCAUU------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------UCCUGAC----------------------------------------------- | 1 | miR-378* | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -----------------------------------------------------------GCATTTCCTGACTATTGGCCAGA------------------------------------ | 23 | - | - | 6 | |
| --------------------------------------------------------TGGGCATTTCCTGACTATTG------------------------------------------ | 20 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCCAG------------------------------------- | 24 | - | 1 | - | |
| -------------------------------------------------------------------TGACTATTGGCCAGATCCTGAATGA-------------------------- | 25 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCCAGA------------------------------------ | 25 | - | - | 1 | |
| -------------------------------------------------------------------TGACTATTGGCCAGATCCT-------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------TTCCTGACTATTGGCCAGA------------------------------------ | 19 | - | - | 1 | |
| -------------------------------TTAGTAATGGTCTCTTCCTGA------------------------------------------------------------------ | 21 | 1 | - | - | |
| -------------------------------------------TCTTCCTGAATGATGGGCA-------------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTGGCC--------------------------------------- | 22 | - | - | 1 | |
| -------------------------------------------------TGAATGATGGGCATTTCCT-------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TTTCCTGACTATTGGCCAGA------------------------------------ | 20 | - | - | 1 | |
| --------------------------------------TGGTCTCTTCCTGAATGATG------------------------------------------------------------ | 20 | - | - | 1 | |
| ---------------------------------------------------------GGGCATTTCCTGACTATTG------------------------------------------ | 19 | - | - | 1 | |
| rat | ggaggctggacctgccatctcgtgctggccattagtaatggtctcttcctgaatgatggGCATTTCCTGACTATTGGCCAGAtcctgaatgatggcctcttcctgtgtgagggcctct | ||||
| ********************************************************************************************************************** | |||||
| rat | ((((((((((...(((((((((..(((((((.((((...((.....(((........))).....))..)))).)))))))....)))..))))))....)))........))))))) | 0.560 -43.70 | |||
| rat | chromosome:4:119336942:119337059:-1 | intergenic ## {Repeats: trf 64 118 0 class=trf} |
block1469882 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.30/0.57 | 18/27/0.12 | 3.0 0.0 0.0 | 4.7 0.0 0.0 | 3 2 26 | 0 0 0 | 2 1 3 | 0 0 0 | 16 34 35 | 10 -1 5 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.48 0.48 0.47 | 5 6 6 | 49 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------AGGAUUA---------------------------------------------- | 36 | novel | ||
| seed | -----------------------------------CCCUUUC------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------GAGCCCU------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | ----------------------------------------------------------CUUGAAU------------------------------------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------GAAUCUA---------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------GGUCUUC------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------------------UGGACCU--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------CUGGUCU-------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------GGAUUAA--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------------------TAGGATTAATCGAGTCATT----------------------------------- | 19 | 1 | 6 | 26 | |
| ---------------------------------------------------------TCTTGAATCTAGGATTAATCGAGTC-------------------------------------- | 25 | 1 | - | 1 | |
| ----------------------------------TCCCTTTCTCTCTGGTCTTCTCA--------------------------------------------------------------- | 23 | - | - | 2 | |
| ------------------------------------------------------------------TAGGATTAATCGAGTCAT------------------------------------ | 18 | - | - | 2 | |
| ----------------------------------------------TGGTCTTCTCATCTTGAATCTAGGATT----------------------------------------------- | 27 | - | - | 1 | |
| ------------------------------------------------------------------TAGGATTAATCGAGTCATTA---------------------------------- | 20 | - | - | 1 | |
| ----------------TGAGCCCTTGTGGACCTATCC----------------------------------------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------------------TCTGGTCTTCTCATCTTGA--------------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------------------------TGAATCTAGGATTAATCGA----------------------------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------AGGATTAATCGAGTCATTA---------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------TGGTCTTCTCATCTTGAA-------------------------------------------------------- | 18 | - | - | 1 | |
| -------------------------GTGGACCTATCCCTTTCTCTC-------------------------------------------------------------------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------TGAATCTAGGATTAATCGAGTCA------------------------------------- | 23 | - | - | 1 | |
| ----------------TGAGCCCTTGTGGACCTATCCCTTTC------------------------------------------------------------------------------ | 26 | - | - | 1 | |
| rat | atgggactttgggttctgagcccttgtggacctatccctttctctctggtcttctcatcttgaatcTAGGATTAATCGAGTCATTattaaggtccccgaatcctagaacctgagacccag | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((..((..((((((.((...(((.((((((........(((..(((((((.((.....))....)))))))...))).........)))))).)))...))))))))..)).)))). | 0.740 -33.53 | |||
| rat | chromosome:3:76957964:76958083:1 | intergenic |
sblock10247 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.338 | no | no | 0.72/0.79 | 18/23/0.50 | 0.0 0.1 | 0.0 0.6 | 2 19 | 0 0 | 1 8 | 0 0 | 32 12 | 4 9 | 5arm 3arm | 1 1 | nd nd | 0.39 0.40 | 4 6 | 36 | 8 | 7 | 12 |
| reads | miRBase family seed | |||||||||
| seed | --------------------------------------------------------------------AGCACCC------------------------- | 31 | novel | |||||||
| seed | ---------------------------------------------------------------------GCACCCG------------------------ | 3 | novel | |||||||
| seed | ---------------------------------GGAACAG------------------------------------------------------------ | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | |||
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCCGA------------- | 20 | 5 | 4 | 1 | - | - | 1 | - | - | |
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCC--------------- | 18 | 2 | - | 1 | 1 | 1 | 1 | - | 1 | |
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCCG-------------- | 19 | 3 | - | 1 | - | 1 | - | - | 1 | |
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCCGAG------------ | 21 | 3 | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------AGCACCCGTGGGCTCCCG-------------- | 18 | - | 2 | - | - | - | - | - | - | |
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCCGAGCA---------- | 23 | - | - | - | - | - | - | 1 | 1 | |
| --------------------------------CGGAACAGCTGGGCAGGC-------------------------------------------------- | 18 | - | - | - | 2 | - | - | - | - | |
| --------------------------------------------------------------------AGCACCCGTGGGCTCCCGA------------- | 19 | - | - | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------CAGCACCCGTGGGCTCCCGAGC----------- | 22 | 1 | - | - | - | - | - | - | - | |
| rat | cggcggggcctcctcggcacaacaaacacaggCGGAACAGCTGGGCAGGCgcgggctcccgggcgctCAGCACCCGTGGGCTCCCGAGcagtgtccccca | |||||||||
| **************************************************************************************************** | ||||||||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000035362 ENSRNOG00000026742 Ypel5 | |||||||||
| rat | .((.(((((((.(((((..............((((....(((((((..((.(((....))).)))))))))..))))......))))).)).))))))). | 0.510 -44.25 | ||||||||
| rat | chromosome:6:22773055:22773154:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000035362|ENSRNOG00000026742 ## ENSRNOG00000026742|protein_coding|Ypel5|yippee-like 5 [Source:RefSeq_peptide;Acc:NP_001030298] ## {SimpF: oe = 0.83 1 CpG} |
sblock11653 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.204 | no | no | 0.42/0.55 | 19/24/0.59 | 0.0 0.0 0.0 0.7 | 0.0 0.0 0.0 0.4 | 1 1 2 27 | 0 0 0 0 | 1 1 1 5 | 0 0 0 0 | 3 12 22 7 | 17 10 -3 12 | 5arm 5arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.33 0.53 0.43 0.32 | 6 6 4 4 | 39 | 5 | 3 | 9 |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------------ACAGAUU-------------------- | 18 | novel | ||||
| seed | --------------------------------------------------------------AGAUUCC------------------ | 14 | novel | ||||
| seed | ---------------------------------------------------------------GAUUCCC----------------- | 2 | novel | ||||
| seed | ---------------------------------------------ACUCUGC----------------------------------- | 2 | novel | ||||
| seed | ----CUUCAGU---------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------GUUGUAC------------------------- | 1 | novel | ||||
| seed | -------------GGGAAGG------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------------TACAGATTCCCAGTGGTTTG-------- | 20 | 1 | - | - | - | 17 | |
| -------------------------------------------------------------CAGATTCCCAGTGGTTTGG------- | 19 | - | 1 | 1 | 1 | 10 | |
| --------------------------------------------------------------AGATTCCCAGTGGTTTGGG------ | 19 | - | - | - | - | 2 | |
| --------------------------------------------GACTCTGCAGTGTTGTACAGA---------------------- | 21 | - | - | - | - | 2 | |
| ---CCTTCAGTCTGGGAAGGATGA--------------------------------------------------------------- | 21 | - | - | - | - | 1 | |
| ------------------------------------------------------TGTTGTACAGATTCCCAGTGGTTT--------- | 24 | - | - | - | - | 1 | |
| ------------TGGGAAGGATGATGGTTCA-------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -------------------------------------------------------------CAGATTCCCAGTGGTTTGGG------ | 20 | - | - | - | - | 1 | |
| rat | tttccttcagtctgggaaggatgatggttcatatgggcagaagagactctgcagtgttgTACAGATTCCCAGTGGTTTGGgcggggg | ||||||
| *************************************************************************************** | |||||||
| rat | .(((((((((.(((((((......((....((((..(((((......))))).))))....))..)))))))....))))).)))). | 0.650 -24.70 | |||||
| rat | chromosome:8:57726214:57726300:-1 | intergenic |
sblock3044 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.465 | no | no | 0.37/0.58 | 18/26/0.10 | 0.0 0.0 0.0 0.0 | 0.0 0.0 1.5 0.0 | 3 2 2 3 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 17 26 24 16 | 18 2 10 20 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.38 0.33 0.42 | 5 5 3 3 | 10 | 2 | 8 | 5 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------------------AGGUGAA--------------------------- | 3 | novel | |
| seed | ------------------GGUCAGC------------------------------------------------------------------------------------------ | 3 | novel | |
| seed | ---------------------------AGGAUGG--------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------GGGCUAC------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------------------TAGGTGAATGATCTGTACT---------------- | 19 | 1 | 2 | |
| -----------------TGGTCAGCGTAGGATGGAG------------------------------------------------------------------------------- | 19 | - | 3 | |
| --------------------------TAGGATGGAGCCTAACCTAGTGCCCC--------------------------------------------------------------- | 26 | - | 2 | |
| ----------------------------------------------------------------------TGGGCTACACTAGGTGAATGA------------------------ | 21 | - | 1 | |
| ----------------------------------------------------------------------TGGGCTACACTAGGTGAA--------------------------- | 18 | - | 1 | |
| rat | tctttgctgcggttgtcTGGTCAGCGTAGGATGGAGCCTAACCTAGTGCCCCaggcagagctgcgggaggTGGGCTACACTAGGTGAATGATCTGTACTaccacaaggcatgggt | |||
| ******************************************************************************************************************* | ||||
| rat | (((.((((..(((.((..(((((((.(((.....(((((.((((....((((((......))).))))))))))))...))).))...)))))...)).)))....)))).))). | 0.800 -37.50 | ||
| rat | chromosome:11:84946255:84946369:-1 | intergenic |
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