other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH (19 loci)
sblock7555 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.643 | no | no | 0.39/0.39 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 12 1 | 0 0 | 6 1 | 0 0 | 16 20 | 0 -4 | 5arm 3arm_loop | 1 1 | nd nd | 0.44 0.44 | 5 3 | 13 | 6 | -4 | -5 |
| reads | miRBase family seed | |||||||
| seed | -----------------UGACCUA------------------------------------------------------ | 12 | miR-192/215 | |||||
| seed | -----------------------------------------UUCUGGC------------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T4S2 | T5S1 | |||
| ----------------ATGACCTATGATTTGCCA-------------------------------------------- | 18 | 1 | 1 | 1 | 3 | 3 | 3 | |
| ----------------------------------------TTTCTGGCAACTTCCTAA-------------------- | 18 | - | - | - | - | - | 1 | |
| rat | ttctgaagatgcagctATGACCTATGATTTGCCAacatgcTTTCTGGCAACTTCCTAAattggttgataaataagggt | |||||||
| ****************************************************************************** | ||||||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000041494 ENSRNOG00000022178 Dcdc5 | |||||||
| rat | ((((.......((((((.....((.((.((((((..........))))))..)).))...)))))).......)))). | 0.940 -12.74 | ||||||
| rat | chromosome:3:91845848:91845925:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000041494|ENSRNOG00000022178 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000033597|ENSRNOG00000022178 ## ENSRNOG00000022178|protein_coding|Dcdc5|doublecortin domain containing 5 Gene [Source:MGI (curated);Acc:Dcdc5-003] |
sblock7660 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.376 | no | no | 0.57/0.62 | 19/24/0.45 | 0.0 0.0 | 0.0 0.0 | 4 4 | 0 0 | 3 1 | 0 0 | 15 11 | 0 6 | 5arm_loop 3arm | 4 4 | nd nd | 0.42 0.48 | 4 4 | 11 | 3 | 6 | 8 |
| reads | miRBase family seed | ||||
| seed | ----------------CCCAAGG--------------------------------------------------------------- | 7 | novel | ||
| seed | -------------------------------------------------------GACCACC------------------------ | 4 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ---------------GCCCAAGGTATCAGTGGGA---------------------------------------------------- | 19 | 1 | 1 | 4 | |
| ------------------------------------------------------TGACCACCCATGCAGCACAGT----------- | 21 | - | - | 4 | |
| ---------------GCCCAAGGTATCAGTGGGAAGCCC----------------------------------------------- | 24 | - | - | 1 | |
| rat | gaggacaactgcaagGCCCAAGGTATCAGTGGGAagcccttcagataatcctccTGACCACCCATGCAGCACAGTatttcgcctta | ||||
| ************************************************************************************** | |||||
| rat | ((((...((((....((....(((.((((..(((..............)))..))))..)))...))....))))......)))). | 0.820 -18.94 | |||
| rat | chromosome:3:140884053:140884138:-1 | intergenic |
sblock9433 [novel_lenNOK_cloningOK_multiarm_DicerNOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.170 | no | no | 0.42/0.68 | 18/25/0.63 | 0.0 0.0 3.0 1.0 0.0 | 0.0 0.0 3.2 1.0 0.0 | 1 14 4 2 1 | 0 0 0 0 0 | 1 7 2 1 1 | 0 0 0 0 0 | 15 21 37 15 10 | 13 6 -16 8 15 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.53 0.45 0.43 0.32 0.42 | 5 4 6 4 4 | 35 | 7 | 2 | 6 |
| reads | miRBase family seed | ||||||||
| seed | ----------------------CCCAGGA-------------------------------------------------------------------- | 26 | novel | ||||||
| seed | -------------------------------------------GAGACAA----------------------------------------------- | 2 | novel | ||||||
| seed | ----------------------------------------GCCGAGA-------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------GGACCUC-------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------UCCCAGG--------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------------------------------AACAUCC-------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------------AGAACAU---------------------------- | 1 | novel | ||||||
| seed | --------------------------------------GUGCCGA---------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------------------------CCCAGUG--------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T4S2 | T5S1 | |||
| ---------------------TCCCAGGATGATAATCTGTG-------------------------------------------------------- | 20 | 1 | 1 | - | - | 1 | - | 14 | |
| ---------------------TCCCAGGATGATAATCTG---------------------------------------------------------- | 18 | - | 2 | 1 | - | - | - | 1 | |
| ---------------------TCCCAGGATGATAATCTGT--------------------------------------------------------- | 19 | - | - | - | - | - | 1 | 2 | |
| ------------------------------------------CGAGACAACCATCTGGGAACA---------------------------------- | 21 | - | - | - | - | - | 1 | 1 | |
| ---------------TGGACCTCCCAGGATGATA--------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | - | |
| ---------------------------------------------------------------GAACATCCCAGTGGCCCGA--------------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------------------------------CAGAACATCCCAGTGGCCC----------------- | 19 | - | - | - | - | - | - | 1 | |
| -------------------------------------TGTGCCGAGACAACCATCTG---------------------------------------- | 20 | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------TCCCAGTGGCCCGAGTCTG---------- | 19 | - | - | - | - | - | - | 1 | |
| --------------------CTCCCAGGATGATAATCTGTG-------------------------------------------------------- | 21 | - | - | - | 1 | - | - | - | |
| ---------------------TCCCAGGATGATAATCTGTGCCG----------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| ---------------------TCCCAGGATGATAATCTGTGCCGAG--------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | |
| ---------------------------------------TGCCGAGACAACCATCTGG--------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | ctgtctgtcccaacgtggaccTCCCAGGATGATAATCTGTGccgagacaaccatctgggaacagaacatcccagtggcccgagtctgcctcagcagg | ||||||||
| ************************************************************************************************* | |||||||||
| rat | (((.(((...((((.(((.((.....(((((....(((((.((.(((......))).)).))))).)))))....)).))).)).))...)))))). | 0.870 -29.80 | |||||||
| rat | chromosome:5:114556884:114556980:-1 | intergenic |
novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (19 loci)
block1617077 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.614 | no | no | 0.42/0.59 | 19/22/0.78 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 1 7 | 0 0 0 | 1 1 5 | 0 0 0 | 11 20 18 | -4 -12 -21 | 5arm_loop 5arm_loop_3arm 3arm_loop | 36 41 96 | nd nd nd | 0.45 0.43 0.58 | 5 6 8 | 9 | 6 | 0 | -9 |
| reads | miRBase family seed | |||||||
| seed | -----------------------------CUCAUAG--------------------------------- | 3 | novel | |||||
| seed | --------------------------------AUAGACA------------------------------ | 2 | novel | |||||
| seed | ---------------------------------UAGACAG----------------------------- | 2 | novel | |||||
| seed | ------------CUCACAG-------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------CUCCUGU----------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ----------------------------CCTCATAGACAGTATCTCACAG------------------- | 22 | - | - | - | - | - | 3 | |
| --------------------------------ATAGACAGTATCTCACAGC------------------ | 19 | 1 | 1 | - | - | - | - | |
| -------------------------------CATAGACAGTATCTCACAGC------------------ | 20 | - | - | 1 | 1 | - | - | |
| --------------------GCTCCTGTCCTCATAGACAGT---------------------------- | 21 | - | - | 1 | - | - | - | |
| -----------TCTCACAGCGCTCCTGTCCTCA------------------------------------ | 22 | - | - | - | - | 1 | - | |
| rat | cgtcgacagtaTCTCACAGCGCTCCTGTCCTCATAGACAGTATCTCACAGCactccagtcctcatagac | |||||||
| ********************************************************************* | ||||||||
| rat | .(((........((...((.(((.(((((......)))))........))).))..))........))) | 0.570 -8.39 | ||||||
| rat | chromosome:4:5746770:5746838:1 | intergenic ## {Repeats: trf 586 626 0 class=trf,trf 617 657 0 class=trf} |
block1617078 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.647 | no | no | 0.42/0.59 | 19/22/0.78 | 0.0 0.0 2.0 | 0.0 0.0 0.6 | 1 1 7 | 0 0 0 | 1 1 5 | 0 0 0 | 10 19 18 | -4 -12 -21 | 5arm_loop 5arm_loop_3arm 3arm_loop | 36 41 96 | nd nd nd | 0.45 0.43 0.58 | 5 6 8 | 9 | 6 | 0 | -9 |
| reads | miRBase family seed | |||||||
| seed | ----------------------------CUCAUAG--------------------------------- | 3 | novel | |||||
| seed | -------------------------------AUAGACA------------------------------ | 2 | novel | |||||
| seed | --------------------------------UAGACAG----------------------------- | 2 | novel | |||||
| seed | -----------CUCACAG-------------------------------------------------- | 1 | novel | |||||
| seed | --------------------CUCCUGU----------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T4S1 | T5S2 | |||
| ---------------------------CCTCATAGACAGTATCTCACAG------------------- | 22 | - | - | - | - | - | 3 | |
| ------------------------------CATAGACAGTATCTCACAGC------------------ | 20 | - | - | 1 | 1 | - | - | |
| -------------------------------ATAGACAGTATCTCACAGC------------------ | 19 | 1 | 1 | - | - | - | - | |
| ----------TCTCACAGCGCTCCTGTCCTCA------------------------------------ | 22 | - | - | - | - | 1 | - | |
| -------------------GCTCCTGTCCTCATAGACAGT---------------------------- | 21 | - | - | 1 | - | - | - | |
| rat | gtcgacagtaTCTCACAGCGCTCCTGTCCTCATAGACAGTATCTCACAGCactccagtcctcatagac | |||||||
| ******************************************************************** | ||||||||
| rat | (((........((...((.(((.(((((......)))))........))).))..))........))) | 0.520 -8.09 | ||||||
| rat | chromosome:4:5746771:5746838:1 | intergenic ## {Repeats: trf 552 592 0 class=trf,trf 521 561 0 class=trf} |
sblock1450 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 14 47 26 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | ---------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| seed | -CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| -------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| rat | ACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ***************************************************************************************************** | ||||
| rat | ....(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...))))))). | 0.620 -25.60 | ||
| rat | chromosome:1:51426773:51426873:1 | intergenic |
sblock1480 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.46/0.58 | 19/24/0.75 | 0.0 2.3 0.0 0.0 | 0.0 1.7 0.0 0.0 | 2 3 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 1 8 28 0 | 21 4 -11 20 | 5arm 5arm 5arm_loop_3arm 3arm | 49 49 49 49 | nd nd nd nd | 0.37 0.41 0.50 0.37 | 6 3 8 6 | 8 | 4 | 0 | 12 |
| reads | miRBase family seed | |||||
| seed | --GCAGGAC-------------------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------CACUGUC----------------------------------------------------- | 2 | novel | |||
| seed | ---------CUCCACU------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------------------------GUAGAAC------------ | 1 | novel | |||
| seed | ----------------GUCACCA------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S2 | T5S1 | |||
| -TGCAGGACCTCCACTGTCA--------------------------------------------------------------------- | 19 | - | - | 1 | 1 | |
| --------CCTCCACTGTCACCAGATCTCCAC--------------------------------------------------------- | 24 | - | 2 | - | - | |
| ----------------------------CCACTGTCTTAGAACATCCACTCT------------------------------------- | 24 | - | - | - | 2 | |
| ---------------------------------------------------------------------TGTAGAACCTCTCCTGGCAC | 20 | 1 | - | - | - | |
| ---------------TGTCACCAGATCTCCACTGTCT---------------------------------------------------- | 22 | - | - | - | 1 | |
| rat | gTGCAGGACCTCCACTGTCACCAGATCTCCACTGTCTTAGAACATCCACTCTatcaccaactggacttgTGTAGAACCTCTCCTGGCAC | |||||
| ***************************************************************************************** | ||||||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||||
| rat | ((((((((......(((.(((.((...((((..((..((((........))))..))....)))))).))))))......))))).))) | 0.620 -19.10 | ||||
| rat | chromosome:1:51542541:51542629:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## {Repeats: trf 1 14 0 class=trf} |
sblock1482 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 14 47 26 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | ---------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| seed | -CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| -------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| rat | ACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ***************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ....(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...))))))). | 0.620 -25.60 | ||
| rat | chromosome:1:51543377:51543477:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1500 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 14 47 26 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | ---------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| seed | -CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| -------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| rat | ACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ***************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ....(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...))))))). | 0.620 -25.60 | ||
| rat | chromosome:1:51601882:51601982:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1522 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.424 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 4 18 51 32 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | -------------------AAGCAAC------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------ACCUGUC-------------------------------------------- | 1 | novel | |
| seed | -----------ACAGAGC--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------ACAAAGG---------------------------------------------------- | 1 | novel | |
| seed | -----CCAGAGA--------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------------ | 21 | - | 2 | |
| ----ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------------- | 24 | 1 | - | |
| ----------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------------- | 20 | - | 1 | |
| ---------------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------------- | 20 | - | 1 | |
| rat | ggatACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctccaggcct | |||
| *************************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | ((...((.(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...)))))))..)))). | 0.610 -27.10 | ||
| rat | chromosome:1:51655741:51655851:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
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