other hairpins
novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (19 loci)
sblock313 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 14 47 26 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | ---------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| seed | -CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| -------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| rat | ACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ***************************************************************************************************** | ||||
| rat | ....(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...))))))). | 0.620 -25.60 | ||
| rat | chromosome:1:50351412:50351512:-1 | intergenic |
sblock4237 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 14 47 26 | 23 16 -16 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.32 0.43 0.55 0.35 | 4 4 8 3 | 6 | 2 | 0 | -19 |
| reads | miRBase family seed | |||
| seed | ---------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| seed | -CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| -------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| rat | ACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ***************************************************************************************************** | ||||
| rat | ....(((((((..(((((.((....((((....(((((((....(((.(((........))).)))..)))))))..)))).)).)))))...))))))). | 0.620 -25.60 | ||
| rat | chromosome:14:46294618:46294718:1 | intergenic |
novel_Multihit_shortStem_loopOverlap_nonpairedHIGH (18 loci)
block395731 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.450 | no | no | 0.55/0.55 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -1 | 5arm_loop | 11 | nd | 0.32 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GGAUUCU------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| AGGATTCTGGAGGCAGTGCCAA----------------------------------- | 22 | 1 | |
| rat | AGGATTCTGGAGGCAGTGCCAAtgnncaagctgtgcagtgagggccccaggnctacc | ||
| ********************************************************* | |||
| rat | .((..(((((.(((..(((((..........)).)))......))))))))....)) | 0.940 -12.90 |
| rat | chromosome:14:40728726:40728782:1 | intergenic |
block668446 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.263 | no | no | 0.58/0.58 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 5arm_loop | 24 | nd | 0.38 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CUGUGAC---------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S1 | |||
| ----GCTGTGACACACCCACCTACACAC------------------------------ | 24 | 1 | |
| rat | gactGCTGTGACACACCCACCTACACACtatgtgcagatgacagtgttctatgctgtt | ||
| ********************************************************** | |||
| -------------------------------------------------------------------- | ENSRNOT00000045970 ENSRNOG00000015292 NP_001101887.1 | ||
| -------------------------------------------------------------------- | ENSRNOT00000021462 ENSRNOG00000015292 NP_001101887.1 | ||
| rat | (((.((((.(((((...((.((.(((.....))).)).))...))))).)).)).))) | 0.920 -11.90 |
| rat | chromosome:17:62718123:62718180:1 | Opposite_strand|Intronic_coding|ENSRNOT00000045970|ENSRNOG00000015292 ## ENSRNOG00000015292|protein_coding|NP_001101887.1|cullin 2 [Source:RefSeq_peptide;Acc:NP_001101887] |
block773915 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.245 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 3arm_loop | 19 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------AUUGUCC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ---------------------CATTGTCCAGTGCCTGTCTTGAGA-- | 24 | 1 | |
| rat | gtcttcagacaagtcttcagcCATTGTCCAGTGCCTGTCTTGAGAtg | ||
| *********************************************** | |||
| rat | (((((.(((((.((.((..((....))..)).)).))))).))))). | 0.910 -10.20 |
| rat | chromosome:19:24155638:24155684:-1 | intergenic |
block803216 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.245 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 3arm_loop | 19 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------AUUGUCC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ---------------------CATTGTCCAGTGCCTGTCTTGAGA-- | 24 | 1 | |
| rat | gtcttcagacaagtcttcagcCATTGTCCAGTGCCTGTCTTGAGAtg | ||
| *********************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041121 ENSRNOG00000029942 LOC684084 | ||
| rat | (((((.(((((.((.((..((....))..)).)).))))).))))). | 0.910 -10.20 |
| rat | chromosome:19:23274828:23274874:1 | Same_strand|Intronic_non-coding|ENSRNOT00000041121|ENSRNOG00000029942 ## ENSRNOG00000029942|protein_coding|LOC684084| |
block803372 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.245 | no | no | 0.50/0.50 | 24/24/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 3arm_loop | 19 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------AUUGUCC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ---------------------CATTGTCCAGTGCCTGTCTTGAGA-- | 24 | 1 | |
| rat | gtcttcagacaagtcttcagcCATTGTCCAGTGCCTGTCTTGAGAtg | ||
| *********************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000041121 ENSRNOG00000029942 LOC684084 | ||
| rat | (((((.(((((.((.((..((....))..)).)).))))).))))). | 0.910 -10.20 |
| rat | chromosome:19:23462040:23462086:1 | Same_strand|Intronic_non-coding|ENSRNOT00000041121|ENSRNOG00000029942 ## ENSRNOG00000029942|protein_coding|LOC684084| |
block846150 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.203 | no | no | 0.50/0.50 | 22/22/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 4 | -1 | 3arm | 15 | nd | 0.32 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------CCAAUGU------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------TCCAATGTCACAGAGCAGTGTC---- | 22 | 1 | 1 | |
| rat | ttgtcactgtacctaaactgtcacaaggccaTCCAATGTCACAGAGCAGTGTCtcag | |||
| ********************************************************* | ||||
| rat | .((.((((((.......((((.(((.((....))..))).)))).))))))...)). | 0.990 -10.30 | ||
| rat | chromosome:1:50965585:50965641:-1 | intergenic |
block956144 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.410 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -4 | 3arm_loop | 29 | nd | 0.40 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------UGUGAUG------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------GTGTGATGCTGTACCCATCCC | 21 | 1 | |
| rat | ggccattggacacagaatccGTGTGATGCTGTACCCATCCC | ||
| ***************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000018934 ENSRNOG00000013975 | ||
| rat | ((....(((..((((.(((.....))).))))..))).)). | 1.000 -8.40 |
| rat | chromosome:1:42096058:42096098:1 | Same_strand|Intronic_coding|ENSRNOT00000018934|ENSRNOG00000013975 ## ENSRNOG00000013975|protein_coding|| |
block1390254 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.410 | no | no | 0.57/0.57 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -4 | 3arm_loop | 29 | nd | 0.40 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------UGUGAUG------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| --------------------GTGTGATGCTGTACCCATCCC | 21 | 1 | |
| rat | ggccattggacacagaatccGTGTGATGCTGTACCCATCCC | ||
| ***************************************** | |||
| rat | ((....(((..((((.(((.....))).))))..))).)). | 1.000 -8.40 |
| rat | chromosome:3:90241670:90241710:-1 | intergenic |
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