other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap (18 loci)
sblock5737 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.154 | no | no | 0.41/0.58 | 19/25/0.22 | 0.0 0.0 0.0 0.0 0.3 | 1.0 0.0 0.0 0.0 0.3 | 6 10 28 4 6 | 0 0 0 0 0 | 1 1 4 2 1 | 0 0 0 0 0 | 8 33 45 39 28 | 21 -1 -13 -3 4 | 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.26 0.26 0.37 0.33 0.24 | 1 2 4 2 2 | 63 | 5 | 5 | 9 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------AGCAGAU----------------------------------------------------------- | 33 | novel | ||||
| seed | ----------------------------------ACUUUCU----------------------------------------------------------------------- | 11 | novel | ||||
| seed | ---------GGCUGAG------------------------------------------------------------------------------------------------ | 6 | novel | ||||
| seed | -----------------------------------------------------GCCUGAU---------------------------------------------------- | 4 | novel | ||||
| seed | ------------------------------------------------------------GGAGCAG--------------------------------------------- | 4 | novel | ||||
| seed | -------------------------------------------------------------GAGCAGA-------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------GACUUUC------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -------------------------------------------------AGAUGCC-------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------GCAGAUG---------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| ---------------------------------------------TAGCAGATGCCTGATGGAG------------------------------------------------ | 19 | 2 | 1 | - | 1 | 28 | |
| ---------------------------------GACTTTCTCCTCTAGCAGA------------------------------------------------------------ | 19 | - | - | - | - | 10 | |
| ----------------------------------------------------TGCCTGATGGAGCAGAACAGA--------------------------------------- | 21 | - | - | 1 | - | 3 | |
| --------TGGCTGAGAATTTTCTGGATTG---------------------------------------------------------------------------------- | 22 | - | - | - | - | 4 | |
| -----------------------------------------------------------TGGAGCAGAACAGAATAAGGAGACT---------------------------- | 25 | - | - | - | - | 4 | |
| ------------------------------------------------------------GGAGCAGAACAGAATAAGGAGAC----------------------------- | 23 | - | - | - | - | 2 | |
| --------TGGCTGAGAATTTTCTGGA------------------------------------------------------------------------------------- | 19 | - | - | - | - | 2 | |
| ---------------------------------------------TAGCAGATGCCTGATGGAGCA---------------------------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------------AGCAGATGCCTGATGGAGCAGAAC------------------------------------------ | 24 | 1 | - | - | - | - | |
| ------------------------------------------------CAGATGCCTGATGGAGCAG--------------------------------------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------GACTTTCTCCTCTAGCAGAT----------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| --------------------------------TGACTTTCTCCTCTAGCAGA------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| rat | tttccagctggctgagaattttctggattgcttGACTTTCTCCTCTAGCAGATGCCTGATGGAGcagaacagaataaggagactaggataaccattgtttgcaattggaaag | ||||||
| **************************************************************************************************************** | |||||||
| rat | (((((((...((.((.(((.((((((.((.((((.((((((.(((((.(((....))).))))).)))).))..)))).)).)))))).....))).)).))..))))))). | 0.680 -29.30 | |||||
| rat | chromosome:19:15931151:15931262:-1 | intergenic |
sblock6729 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.082 | no | no | 0.38/0.68 | 18/24/0.31 | 0.0 0.0 0.4 0.0 | 0.0 0.0 0.4 0.0 | 4 11 31 1 | 0 0 0 0 | 2 6 6 1 | 0 0 0 0 | 30 41 33 7 | 4 -7 1 27 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.26 0.53 0.32 0.40 | 2 7 3 3 | 107 | 8 | -2 | -2 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------------GGUCAUG-------------------------------------------- | 24 | novel | |||||||
| seed | ------------------------------------------CCAACCC----------------------------------------------------------------- | 19 | novel | |||||||
| seed | --------------------------------------------------------------UGGUCAU--------------------------------------------- | 15 | novel | |||||||
| seed | ---------------------------------------------------------------------GGUCAGC-------------------------------------- | 9 | novel | |||||||
| seed | -------------------------------AAGCUGG---------------------------------------------------------------------------- | 7 | novel | |||||||
| seed | ---------------------------------------------------------------------------------UAAGCAU-------------------------- | 5 | novel | |||||||
| seed | -------------------------------------------------------------------------------UUUAAGC---------------------------- | 5 | novel | |||||||
| seed | -----------------------------------------------------------------------------------AGCAUGA------------------------ | 4 | novel | |||||||
| seed | ------------------------------------------------------------------------------UUUUAAG----------------------------- | 3 | novel | |||||||
| seed | ----------------------------------------------------------------------------------AAGCAUG------------------------- | 3 | novel | |||||||
| seed | --------------------------------------------------------CGCCCUU--------------------------------------------------- | 3 | novel | |||||||
| seed | ----------------------------------------GUCCAAC------------------------------------------------------------------- | 3 | novel | |||||||
| seed | -------------------------------------------------------------------------AGCCUUU---------------------------------- | 2 | novel | |||||||
| seed | ---------------------------------GCUGGCU-------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------------------------------------GAGUGGC------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------------------GUCAGCC------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------CCUUGGU------------------------------------------------ | 1 | novel | |||||||
| seed | ----------------------------------CUGGCUG------------------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------TGGTCATGGTCAGCCTTTT--------------------------------- | 19 | - | 2 | 1 | 1 | - | - | 1 | 18 | |
| -----------------------------------------TCCAACCCGTAGTGCCGCC------------------------------------------------------ | 19 | - | 1 | 2 | - | 1 | 1 | - | 11 | |
| -------------------------------------------------------------TTGGTCATGGTCAGCCTTT---------------------------------- | 19 | - | - | 1 | - | 1 | - | - | 13 | |
| --------------------------------------------------------------------------------TTAAGCATGAGTGGCACACA-------------- | 20 | - | - | - | - | 1 | - | - | 4 | |
| --------------------------------------------------------------------TGGTCAGCCTTTTTAAGCA--------------------------- | 19 | - | - | - | - | - | - | - | 5 | |
| ----------------------------------------------------------------------------------AAGCATGAGTGGCACACAT------------- | 19 | - | - | - | - | - | - | - | 4 | |
| ------------------------------------------------------------------------------TTTTAAGCATGAGTGGCACACA-------------- | 22 | - | - | - | 1 | - | - | - | 3 | |
| ------------------------------TAAGCTGGCTGTCCAACCC----------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 4 | |
| -------------------------------------------------------CCGCCCTTGGTCATGGTCAG--------------------------------------- | 20 | - | - | - | - | - | - | - | 3 | |
| --------------------------------------------------------------------TGGTCAGCCTTTTTAAGCATG------------------------- | 21 | - | - | - | - | - | - | - | 3 | |
| ------------------------------------------------------------------------CAGCCTTTTTAAGCATGAGTG--------------------- | 21 | - | - | - | - | - | - | - | 2 | |
| -----------------------------------------------------------------------------TTTTTAAGCATGAGTGGCACACA-------------- | 23 | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------------------------------------------------TAAGCATGAGTGGCACACA-------------- | 19 | - | - | - | - | - | - | - | 2 | |
| ---------------------------------------TGTCCAACCCGTAGTGCCGC------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 2 | |
| ------------------------------TAAGCTGGCTGTCCAACCCG---------------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------TGTCCAACCCGTAGTGCC--------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ----------------------------------------------------------CCCTTGGTCATGGTCAGCCTTTTT-------------------------------- | 24 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------TCCAACCCGTAGTGCCGCCCT---------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------TCCAACCCGTAGTGCCGC------------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------TTTTAAGCATGAGTGGCACA---------------- | 20 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------GGTCAGCCTTTTTAAGCATGA------------------------ | 21 | - | - | - | - | - | - | - | 1 | |
| ------------------------------TAAGCTGGCTGTCCAACCCGTAG------------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | |
| ------------------------------TAAGCTGGCTGTCCAACC------------------------------------------------------------------ | 18 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGAGTGGCACACATAAGACA------- | 20 | - | - | - | - | - | - | - | 1 | |
| --------------------------------AGCTGGCTGTCCAACCCGTAGTG----------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------------TGGTCAGCCTTTTTAAGCATGAGT---------------------- | 24 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------GCTGGCTGTCCAACCCGTA-------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | |
| --------------------------------------------------------------TGGTCATGGTCAGCCTTTTTAA------------------------------ | 22 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------TCCAACCCGTAGTGCCGCCCTT--------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------------------TTTTTAAGCATGAGTGGCACA---------------- | 21 | - | - | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------TAAGCATGAGTGGCACAC--------------- | 18 | - | - | - | - | - | - | - | 1 | |
| rat | ggtagttactctctgcaagctacacccagctaagctggctgTCCAACCCGTAGTGCCGCCcTTGGTCATGGTCAGCCTTTTtaagcatgagtggcacacataagacaagctacc | |||||||||
| ****************************************************************************************************************** | ||||||||||
| rat | (((((((..(((.((...(((((...((((((((..(((((.(((..(((.((.......)))))...))).)))))..)))).)).)).)))))...))..)))..))))))) | 0.870 -32.90 | ||||||||
| rat | chromosome:20:5514908:5515021:-1 | intergenic |
sblock7158 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.254 | no | no | 0.40/0.61 | 18/25/0.58 | 0.6 0.0 0.7 0.0 | 0.0 0.0 4.2 0.0 | 27 1 6 5 | 0 0 0 0 | 6 1 2 2 | 0 0 0 0 | 17 28 14 8 | -1 -7 -1 10 | 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.35 0.55 0.22 0.20 | 4 7 4 3 | 60 | 6 | 11 | 8 |
| reads | miRBase family seed | |||||||
| seed | --------------------GACGCCA----------------------------------------------------------- | 28 | novel | |||||
| seed | ------------------CUGACGC------------------------------------------------------------- | 11 | novel | |||||
| seed | ---------------GCCCUGA---------------------------------------------------------------- | 9 | novel | |||||
| seed | ------------------------------------------------GGGACAG------------------------------- | 5 | novel | |||||
| seed | -----------------------------------------------------------GAUGGCU-------------------- | 5 | novel | |||||
| seed | -----------------------------CACAAAU-------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------CAGGCAU--------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| -------------------TGACGCCAATCACAAATGTCCCC-------------------------------------------- | 23 | 1 | 1 | - | - | 2 | 19 | |
| -----------------CCTGACGCCAATCACAAATGTCCCC-------------------------------------------- | 25 | - | - | 1 | - | - | 8 | |
| --------------TGCCCTGACGCCAATCACA----------------------------------------------------- | 19 | - | 1 | - | 1 | 1 | 5 | |
| ----------------------------------------------------------TGATGGCTTTCTGTATTGAG-------- | 20 | 2 | - | - | - | - | 3 | |
| -------------------TGACGCCAATCACAAATGTC----------------------------------------------- | 20 | - | - | - | - | - | 2 | |
| -----------------------------------------------TGGGACAGGCATGATGGC--------------------- | 18 | - | - | - | - | - | 2 | |
| -----------------------------------------------TGGGACAGGCATGATGGCTTTCTGT-------------- | 25 | 1 | - | - | - | - | 1 | |
| -------------------TGACGCCAATCACAAATG------------------------------------------------- | 18 | - | - | - | - | - | 2 | |
| ---------------------------------------------------ACAGGCATGATGGCTTTCTGT-------------- | 21 | - | - | - | - | - | 1 | |
| -----------------CCTGACGCCAATCACAAATGT------------------------------------------------ | 21 | - | - | - | - | - | 1 | |
| -----------------------------------------------TGGGACAGGCATGATGGCTTTC----------------- | 22 | - | - | - | - | - | 1 | |
| -------------------TGACGCCAATCACAAATGT------------------------------------------------ | 19 | - | - | - | - | - | 1 | |
| --------------TGCCCTGACGCCAATCACAAATG------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------TCACAAATGTCCCCGACACT-------------------------------------- | 20 | - | 1 | - | - | - | - | |
| -----------------CCTGACGCCAATCACAAA--------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| rat | agctgacttcatcctgcCCTGACGCCAATCACAAATGTCCCCgacactgggacaggcatgatggctttctgtattgaggcctgagc | |||||||
| ************************************************************************************** | ||||||||
| rat | .(((..(((((...(((...((.(((.((((....((((((.......))))))....)))))))))...))).)))))....))) | 0.500 -23.10 | ||||||
| rat | chromosome:20:5545995:5546080:1 | intergenic |
sblock7187 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.301 | no | no | 0.44/0.63 | 18/26/0.21 | 0.7 0.2 2.7 0.0 0.0 | 2.4 1.5 2.6 0.0 0.0 | 9 17 9 79 1 | 0 0 0 0 0 | 3 7 4 6 1 | 0 0 0 0 0 | 7 21 38 31 7 | 23 8 -10 -3 16 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.36 0.50 0.32 0.26 0.38 | 3 5 4 2 4 | 145 | 8 | 0 | 9 |
| reads | miRBase family seed | |||||||||
| seed | ---------------------------------------------------------GAGCCGU------------------------------------------ | 86 | novel | |||||||
| seed | ----------------------GAGUUGG----------------------------------------------------------------------------- | 26 | novel | |||||||
| seed | --------GGCUGCA------------------------------------------------------------------------------------------- | 7 | novel | |||||||
| seed | --------------------GUGAGUU------------------------------------------------------------------------------- | 6 | novel | |||||||
| seed | ------------------------------------------GUUCCAU--------------------------------------------------------- | 4 | novel | |||||||
| seed | ---------------------------------------------CCAUUUG------------------------------------------------------ | 3 | novel | |||||||
| seed | -----------------------AGUUGGG---------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ---------------------------------------------------GGGCAUG------------------------------------------------ | 2 | novel | |||||||
| seed | ---------------------------------------CCUGUUC------------------------------------------------------------ | 2 | novel | |||||||
| seed | ----------------------------------------------------------------GAAGGUA----------------------------------- | 1 | novel | |||||||
| seed | ------------GCACGAC--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------AUGAGCC-------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------------CGUGAAG-------------------------------------- | 1 | novel | |||||||
| seed | ----------CUGCACG----------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------------------------GGUACCC----------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------TGAGCCGTGAAGGTAGAGA------------------------------- | 19 | 1 | 1 | 1 | 1 | 1 | - | 79 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCCTGTTCC----------------------------------------------------------- | 26 | - | - | - | - | - | - | 10 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCCTG--------------------------------------------------------------- | 22 | - | - | - | - | - | - | 4 | - | |
| ---------------------TGAGTTGGGATTGCTTCTC------------------------------------------------------------------ | 19 | - | - | - | 1 | - | - | 2 | 1 | |
| ----------------------GAGTTGGGATTGCTTCTCCTGT-------------------------------------------------------------- | 22 | - | - | - | - | - | - | 3 | - | |
| -----------------------------------------TGTTCCATTTGGGCATGAG---------------------------------------------- | 19 | 1 | - | - | - | - | 1 | 1 | - | |
| -------------------TGTGAGTTGGGATTGCTTCTC------------------------------------------------------------------ | 21 | - | - | - | - | 1 | - | 2 | - | |
| -------TGGCTGCACGACTGTGAGT-------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 3 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCCTGT-------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | 2 | - | |
| --------------------------------------------------------TGAGCCGTGAAGGTAGAGAAGG---------------------------- | 22 | 1 | - | - | - | - | - | 1 | - | |
| -------TGGCTGCACGACTGTGAGTTGGGA--------------------------------------------------------------------------- | 24 | 2 | - | - | - | - | - | - | - | |
| --------------------------------------------TCCATTTGGGCATGAGCCG------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCCTGTTC------------------------------------------------------------ | 25 | - | - | - | - | - | - | 2 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCC----------------------------------------------------------------- | 20 | - | 1 | 1 | - | - | - | - | - | |
| --------------------------------------------TCCATTTGGGCATGAGCC-------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------TGAAGGTAGAGAAGGTACCCCAAAA------------------ | 25 | - | - | - | - | - | - | 1 | - | |
| -------------------TGTGAGTTGGGATTGCTTCTCC----------------------------------------------------------------- | 22 | 1 | - | - | - | - | - | - | - | |
| ---------GCTGCACGACTGTGAGTTG------------------------------------------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| -------TGGCTGCACGACTGTGAGTT------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| -------------------TGTGAGTTGGGATTGCTTCTCCTG--------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| -------------------TGTGAGTTGGGATTGCTTC-------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------CCGTGAAGGTAGAGAAGGT--------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ---------------------TGAGTTGGGATTGCTTCTCCTGTT------------------------------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------AGGTACCCCAAAACGGGCTTGTTC------- | 24 | - | - | - | - | - | - | - | 1 | |
| -----------TGCACGACTGTGAGTTGGGAT-------------------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | - | - | |
| --------------------------------------TCCTGTTCCATTTGGGCATG------------------------------------------------ | 20 | - | - | - | - | 1 | - | - | - | |
| --------------------------------------------------TGGGCATGAGCCGTGAAGG------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------TGGGCATGAGCCGTGAAGGT------------------------------------ | 20 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------TCCTGTTCCATTTGGGCAT------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | - | |
| ------------------------------------------------------CATGAGCCGTGAAGGTAGAGA------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -------TGGCTGCACGACTGTGAGTTGG----------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------TGTTCCATTTGGGCATGAGCCGTG----------------------------------------- | 24 | - | - | - | - | - | - | 1 | - | |
| rat | agacggctggctgcacgactgtgagttgggattgcttctcctgttccatttgggcaTGAGCCGTGAAGGTAGAGAaggtaccccaaaacgggcttgttctcccgtt | |||||||||
| ********************************************************************************************************** | ||||||||||
| rat | .(((((..((..(((...((((...(((((....((((((.....((.(((((((....))).))))))..))))))....))))).))))...)))))..))))) | 0.560 -31.80 | ||||||||
| rat | chromosome:20:5552994:5553099:1 | intergenic |
sblock8485 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.993 | no | no | 0.29/0.53 | 18/26/0.37 | 3.2 0.0 0.0 2.9 0.0 | 2.6 0.0 0.0 2.1 0.0 | 5 122 1 23 4 | 0 0 0 0 0 | 1 9 1 3 3 | 0 0 0 0 0 | 0 18 31 11 3 | 2 -12 -23 4 15 | 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.22 0.65 0.67 0.52 0.57 | 3 13 14 7 10 | 266 | 9 | 0 | 12 |
| reads | miRBase family seed | ||||||||||
| seed | -------------------CUCUAGA------------------------------------------------------------- | 200 | novel | ||||||||
| seed | ---------------------------------------------------AGAAUUG----------------------------- | 13 | novel | ||||||||
| seed | --------------------------------------------------------UGGUAAG------------------------ | 8 | novel | ||||||||
| seed | --------------------UCUAGAC------------------------------------------------------------ | 8 | novel | ||||||||
| seed | ---------------------CUAGACC----------------------------------------------------------- | 7 | novel | ||||||||
| seed | -----------------------AGACCAC--------------------------------------------------------- | 7 | novel | ||||||||
| seed | ---------------------------------------------------------GGUAAGG----------------------- | 6 | novel | ||||||||
| seed | --------------------------------------------------------------GGGAUUU------------------ | 4 | novel | ||||||||
| seed | -AGGUAGG------------------------------------------------------------------------------- | 3 | novel | ||||||||
| seed | ---------GCUCUUU----------------------------------------------------------------------- | 2 | novel | ||||||||
| seed | ---------------------------------------------------------------------CAUAAUG----------- | 2 | novel | ||||||||
| seed | -----------------------------------------------------AAUUGGU--------------------------- | 1 | novel | ||||||||
| seed | -------------------------ACCACGU------------------------------------------------------- | 1 | novel | ||||||||
| seed | --------------------------------GAAACAG------------------------------------------------ | 1 | novel | ||||||||
| seed | ------------------CCUCUAG-------------------------------------------------------------- | 1 | novel | ||||||||
| seed | -------------------------------------------------------------------UUCAUAA------------- | 1 | novel | ||||||||
| seed | ---------------------------------------------AACGUUA----------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------CCTCTAGACCACGTGAAACAGATTGA------------------------------------------- | 26 | 4 | 3 | 3 | 4 | 1 | 2 | 2 | 122 | 4 | |
| ------------------CCTCTAGACCACGTGAAACAGA----------------------------------------------- | 22 | 2 | - | 2 | - | 1 | 1 | 1 | 23 | - | |
| --------------------------------------------------TAGAATTGGTAAGGGATTTCA---------------- | 21 | - | - | 1 | 1 | - | - | - | 11 | - | |
| ------------------CCTCTAGACCACGTGAAACAG------------------------------------------------ | 21 | 3 | - | - | 3 | - | 2 | 1 | 3 | - | |
| ------------------CCTCTAGACCACGTGAAACA------------------------------------------------- | 20 | - | - | - | 2 | - | 1 | - | 5 | - | |
| ----------------------TAGACCACGTGAAACAGATTGA------------------------------------------- | 22 | 1 | - | - | 1 | - | - | - | 5 | - | |
| --------------------TCTAGACCACGTGAAACAGATTGA------------------------------------------- | 24 | - | - | - | - | - | - | - | 7 | - | |
| -------------------------------------------------------TTGGTAAGGGATTTCATAA------------- | 19 | - | - | - | 1 | - | - | - | 6 | - | |
| -------------------CTCTAGACCACGTGAAACAGATTGA------------------------------------------- | 25 | - | 1 | - | - | - | - | - | 5 | - | |
| --------------------------------------------------------TGGTAAGGGATTTCATAATG----------- | 20 | - | - | - | - | - | - | - | 6 | - | |
| ------------------CCTCTAGACCACGTGAAAC-------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | 3 | - | |
| -------------------------------------------------------------AGGGATTTCATAATGCTGACCTC--- | 23 | - | - | - | - | - | - | - | 4 | - | |
| --------------------------------------------------------------------TCATAATGCTGACCTCGCT | 19 | - | - | - | - | - | 1 | - | 1 | - | |
| TAGGTAGGTGCTCTTTCTCCTCT---------------------------------------------------------------- | 23 | - | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------GAATTGGTAAGGGATTTCA---------------- | 19 | - | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------TTTCATAATGCTGACCTC--- | 18 | - | 1 | - | - | - | - | - | - | - | |
| ------------------------GACCACGTGAAACAGATTGA------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------TGAAACAGATTGATAACGTTAGAA-------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -------------------CTCTAGACCACGTGAAAC-------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| ------------------CCTCTAGACCACGTGAAA--------------------------------------------------- | 18 | - | - | - | - | - | - | - | 1 | - | |
| --------TGCTCTTTCTCCTCTAGACC----------------------------------------------------------- | 20 | - | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------TAACGTTAGAATTGGTAAGGGA--------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -------------------CTCTAGACCACGTGAAACAGA----------------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | - | |
| --------TGCTCTTTCTCCTCTAGACCAC--------------------------------------------------------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TTGGTAAGGGATTTCATAATGC---------- | 22 | - | - | - | - | - | - | - | 1 | - | |
| TAGGTAGGTGCTCTTTCTCCTCTA--------------------------------------------------------------- | 24 | - | - | - | - | - | - | - | 1 | - | |
| -----------------TCCTCTAGACCACGTGAAACAGA----------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | |
| rat | taggtaggtgctctttctCCTCTAGACCACGTGAAACAGATTGAtaacgttagaattggtaagggatttcataatgctgacctcgct | ||||||||||
| *************************************************************************************** | |||||||||||
| ------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||||||||||
| rat | .((((.(((.(((((...((((((....((((..............))))))))...)).)))))..........))).)))).... | 0.910 -11.84 | |||||||||
| rat | chromosome:4:119283548:119283634:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
sblock127 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.226 | no | no | 0.35/0.53 | 18/25/0.48 | 0.0 0.0 0.0 0.0 0.0 | 3.0 0.0 0.8 0.0 0.0 | 2 11 4 1 9 | 0 0 0 0 0 | 1 6 3 1 3 | 0 0 0 0 0 | 3 22 52 24 8 | 29 16 -14 12 27 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 6 7 7 7 | nd nd nd nd nd | 0.37 0.37 0.42 0.21 0.35 | 4 4 4 3 2 | 54 | 6 | 12 | 12 |
| reads | miRBase family seed | |||||||
| seed | -----------------------ACCACUG-------------------------------------------------------------------------------------- | 13 | novel | |||||
| seed | ----------------------UACCACU--------------------------------------------------------------------------------------- | 12 | novel | |||||
| seed | -----------------------------------------------------------------------------------------GAGGAUG-------------------- | 9 | novel | |||||
| seed | -----------------------------------------------------GCAUUCC-------------------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------ACCAGAG----------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------------------------------------CUGAGGA---------------------- | 2 | novel | |||||
| seed | --------------------------------------------------------------------------------------UCUGAGG----------------------- | 2 | novel | |||||
| seed | ----GCCAUGU--------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------------------ACUGAUA----------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------GAGCAUU--------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------GCAUUAC------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------GAUACCA-------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------------------UGAGGAU--------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------UGUUGUG----------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------------------CUCUGAG------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| ----------------------TACCACTGATACCAGAGCA--------------------------------------------------------------------------- | 19 | 1 | - | 1 | - | - | 11 | |
| ----------------------------------------------------------------------------------------TGAGGATGATTGTTGAATGA-------- | 20 | - | - | - | - | - | 9 | |
| ---------------------TTACCACTGATACCAGAGCA--------------------------------------------------------------------------- | 20 | 1 | - | 1 | 1 | 1 | 3 | |
| ---------------------TTACCACTGATACCAGAGC---------------------------------------------------------------------------- | 19 | - | 1 | - | 1 | - | 2 | |
| ----------------------------------------------------TGCATTCCTGTGTTCTCAT--------------------------------------------- | 19 | 1 | 1 | - | - | - | 1 | |
| -------------------------CACTGATACCAGAGCATAGCA---------------------------------------------------------------------- | 21 | - | - | - | - | - | 2 | |
| --------------------------------------------------------------------------------------TCTGAGGATGATTGTTGAATGAA------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------TGCATTCCTGTGTTCTCA---------------------------------------------- | 18 | - | - | - | - | - | 1 | |
| ----------------------------TGATACCAGAGCATAGCAGGAA------------------------------------------------------------------ | 22 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------------------------TCTCTGAGGATGATTGTTGAATGA-------- | 24 | - | - | - | 1 | - | - | |
| -------------------------------------------------------------------------------------CTCTGAGGATGATTGTTGA------------ | 19 | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------------CTGTTGTGTTCTCTCTGAG------------------------ | 19 | - | - | - | - | - | 1 | |
| ---------------------TTACCACTGATACCAGAG----------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| ---GGCCATGTGGATTGAGCAT---------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| ---GGCCATGTGGATTGAGCATTACCAC---------------------------------------------------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -----------------AGCATTACCACTGATACCAGA------------------------------------------------------------------------------ | 21 | 1 | - | - | - | - | - | |
| --------------------------------------------------------------------------------------TCTGAGGATGATTGTTGAA----------- | 19 | - | - | - | - | - | 1 | |
| ---------------TGAGCATTACCACTGATACCAGAG----------------------------------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -------------------------------TACCAGAGCATAGCAGGAATT---------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | |
| -------------------------------TACCAGAGCATAGCAGGAA------------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------------------------------------CTGAGGATGATTGTTGAATGA-------- | 21 | - | - | - | - | - | 1 | |
| -------------------------------------------------------------------------------------CTCTGAGGATGATTGTTGAA----------- | 20 | - | - | - | - | - | 1 | |
| rat | cctggccatgtggattgagcatTACCACTGATACCAGAGCAtagcaggaatttgcattcctgtgttctcattgctgttgtgttctctcTGAGGATGATTGTTGAATGAattcaggc | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | (((((....((..(((.(((((((((...((....((((((((((((.(((..((((....))))....))).)))))))))))).))...)).)))).))).)))..))))))). | 0.540 -30.30 | ||||||
| rat | chromosome:1:48338379:48338494:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap (18 loci)
sblock1259 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.155 | no | no | 0.36/0.67 | 18/25/0.63 | 0.0 0.0 0.6 0.0 | 0.0 0.0 0.6 0.0 | 1 1 5 7 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 10 23 24 9 | 6 -8 -22 7 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 19 22 22 22 | nd nd nd nd | 0.17 0.47 0.44 0.41 | 1 8 8 5 | 19 | 3 | 2 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------GCUUCUA----------------------- | 8 | novel | ||
| seed | -----------------------------------AGGGAUU-------------------------------------- | 4 | miR-541 | ||
| seed | -------------------------------------------GGGAACU------------------------------ | 4 | novel | ||
| seed | ------------------------CAGUUGC------------------------------------------------- | 1 | novel | ||
| seed | -----------GCCUGAG-------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------CAUAGGG----------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| -------------------------------------------------TGCTTCTAGTCTTAGTTGAACT--------- | 22 | 1 | 7 | - | |
| ------------------------------------------TGGGAACTGCTTCTAGTCT------------------- | 19 | 1 | 1 | 1 | |
| ----------------------------------TAGGGATTTGGGAACTGCTTCT------------------------ | 22 | - | 3 | - | |
| ----------------------------------TAGGGATTTGGGAACTGCT--------------------------- | 19 | - | 1 | - | |
| -----------------------TCAGTTGCTCATAGGGATT-------------------------------------- | 19 | - | 1 | - | |
| ------------------------------------------TGGGAACTGCTTCTAGTCTTAGT--------------- | 23 | - | 1 | - | |
| ----------GGCCTGAGGGGGATCAGT---------------------------------------------------- | 18 | - | 1 | - | |
| -------------------------------TCATAGGGATTTGGGAACTGCTTCT------------------------ | 25 | - | 1 | - | |
| rat | agcagggtctggcctgagggggatcagttgctcaTAGGGATTTGGGAACTGCTTCTAGTCTTAGTTGAACTagggttgca | ||||
| ******************************************************************************** | |||||
| rat | .((((..(((((.((((((.(((.(((((.((((........)))))))))..)))..)))))).....))))).)))). | 0.410 -22.20 | |||
| rat | chromosome:1:47742712:47742791:1 | intergenic |
sblock1319 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.155 | no | no | 0.36/0.67 | 18/25/0.63 | 0.0 0.0 0.6 0.0 | 0.0 0.0 0.6 0.0 | 1 1 5 7 | 0 0 0 0 | 1 1 1 3 | 0 0 0 0 | 10 23 24 9 | 6 -8 -22 7 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 19 22 22 22 | nd nd nd nd | 0.17 0.47 0.44 0.41 | 1 8 8 5 | 19 | 3 | 2 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------GCUUCUA----------------------- | 8 | novel | ||
| seed | -----------------------------------AGGGAUU-------------------------------------- | 4 | miR-541 | ||
| seed | -------------------------------------------GGGAACU------------------------------ | 4 | novel | ||
| seed | ------------------------CAGUUGC------------------------------------------------- | 1 | novel | ||
| seed | -----------GCCUGAG-------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------CAUAGGG----------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T5S1 | T5S2 | |||
| -------------------------------------------------TGCTTCTAGTCTTAGTTGAACT--------- | 22 | 1 | 7 | - | |
| ------------------------------------------TGGGAACTGCTTCTAGTCT------------------- | 19 | 1 | 1 | 1 | |
| ----------------------------------TAGGGATTTGGGAACTGCTTCT------------------------ | 22 | - | 3 | - | |
| ----------------------------------TAGGGATTTGGGAACTGCT--------------------------- | 19 | - | 1 | - | |
| -----------------------TCAGTTGCTCATAGGGATT-------------------------------------- | 19 | - | 1 | - | |
| ------------------------------------------TGGGAACTGCTTCTAGTCTTAGT--------------- | 23 | - | 1 | - | |
| ----------GGCCTGAGGGGGATCAGT---------------------------------------------------- | 18 | - | 1 | - | |
| -------------------------------TCATAGGGATTTGGGAACTGCTTCT------------------------ | 25 | - | 1 | - | |
| rat | agcagggtctggcctgagggggatcagttgctcaTAGGGATTTGGGAACTGCTTCTAGTCTTAGTTGAACTagggttgca | ||||
| ******************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||||
| rat | .((((..(((((.((((((.(((.(((((.((((........)))))))))..)))..)))))).....))))).)))). | 0.410 -22.20 | |||
| rat | chromosome:1:47863288:47863367:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock1442 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.35/0.46 | 18/24/0.33 | 0.0 0.5 0.0 | 0.0 0.3 0.0 | 1 11 1 | 0 0 0 | 1 1 1 | 0 0 0 | 9 26 15 | 1 -12 0 | 5arm 5arm_loop_3arm 3arm | 21 40 40 | nd nd nd | 0.29 0.47 0.30 | 2 6 2 | 15 | 2 | -1 | -5 |
| reads | miRBase family seed | |||
| seed | ----------------------------UGACUAG---------------------------------------- | 7 | novel | |
| seed | ---------------------------UUGACUA----------------------------------------- | 5 | novel | |
| seed | --------------------------UUUGACU------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------GAUCAUA--------------------------- | 1 | novel | |
| seed | ----------GGCUCUU---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------TTGACTAGCCTTATGATCA----------------------------- | 19 | - | 6 | |
| --------------------------TTTGACTAGCCTTATGATC------------------------------ | 19 | - | 3 | |
| --------------------------TTTGACTAGCCTTATGATCA----------------------------- | 20 | - | 2 | |
| ----------------------------------------TGATCATAGGGATACACTAG--------------- | 20 | - | 1 | |
| -------------------------CTTTGACTAGCCTTATGATC------------------------------ | 20 | - | 1 | |
| ---------TGGCTCTTTGCTTCCTCTTTGACT------------------------------------------ | 24 | 1 | - | |
| ---------------------------TTGACTAGCCTTATGATC------------------------------ | 18 | - | 1 | |
| rat | catgcacaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggatacactaggccattggaagatga | |||
| *************************************************************************** | ||||
| rat | (((...(((((((.((.((..(((.((.(((.((......)).))).)))))..))..)))))))))....))). | 1.000 -20.30 | ||
| rat | chromosome:1:51421860:51421934:1 | intergenic |
sblock1486 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 5 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 22 54 35 18 13 | 16 -16 -1 16 21 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 17 21 23 23 23 | nd nd nd nd nd | 0.37 0.37 0.16 0.53 0.63 | 5 4 3 7 10 | 10 | 2 | -12 | -11 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------GCCUUUG---------------------------------------------------- | 6 | novel | |
| seed | ------------------------------------------------------------------------------GCCAUGG----------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------------GGUCUGG------------------------ | 1 | novel | |
| seed | -----------------------CUAUUUU------------------------------------------------------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------------GCAGAAG---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ------------------------------------------------------TGCCTTTGCAGAAGGAAGT----------------------------------------- | 19 | 1 | 5 | |
| ----------------------------------------------------------------------------------TGGTCTGGTTATAATTTTG------------- | 19 | - | 1 | |
| ------------------------------------------------------------TGCAGAAGGAAGTAGGATG----------------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TGCCATGGTCTGGTTATAA------------------ | 19 | - | 1 | |
| ----------------------CCTATTTTGTGCTGTCTTG------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | tgcactgtgctgactgtccaagcctattttgtgctgtcttgcctgtgaacttccTGCCTTTGCAGAAGGAAGTaggatgccatggtctggttataattttgtcagttgaagtgt | |||
| ****************************************************************************************************************** | ||||
| ---------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .(((((..((((((...(((..((.....((.((.(((((((.......(((.((((....)))))))...))))))))))).))..)))..........))))))...))))) | 0.990 -33.82 | ||
| rat | chromosome:1:51544856:51544969:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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