other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap (18 loci)
sblock354 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 5 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 26 58 35 18 13 | 16 -16 -1 16 21 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 17 21 23 23 23 | nd nd nd nd nd | 0.37 0.26 0.05 0.53 0.63 | 5 4 1 7 10 | 10 | 2 | -12 | -11 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GCCUUUG---------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------------GCAGAAG---------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GGUCUGG------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------------------------GCCAUGG----------------------------- | 1 | novel | |
| seed | ---------------------------CUAUUUU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------TGCCTTTGCAGAAGGAAGT----------------------------------------- | 19 | 1 | 5 | |
| --------------------------CCTATTTTGTGCTGTCTTG------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------TGCAGAAGGAAGTAGGATG----------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------------TGGTCTGGTTATAATTTTG------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------TGCCATGGTCTGGTTATAA------------------ | 19 | - | 1 | |
| rat | cacctccactgtgctgactgtccaagcctattttgtgctgtcttgcctgtgttcttccTGCCTTTGCAGAAGGAAGTaggatgccatggtctggttataattttgttcagttgaagtg | |||
| ********************************************************************************************************************** | ||||
| rat | (((.((.((((.((.......(((..((.....((.((.(((((((.....(((((.((((....))))))))).))))))))))).))..)))..........)).)))).)).))) | 0.980 -31.93 | ||
| rat | chromosome:1:50778923:50779040:-1 | intergenic |
sblock426 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 5 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 26 58 35 18 13 | 16 -16 -1 16 21 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 17 21 23 23 23 | nd nd nd nd nd | 0.37 0.37 0.16 0.53 0.63 | 5 4 3 7 10 | 10 | 2 | -12 | -11 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GCCUUUG---------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------------GCAGAAG---------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GGUCUGG------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------------------------GCCAUGG----------------------------- | 1 | novel | |
| seed | ---------------------------CUAUUUU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------TGCCTTTGCAGAAGGAAGT----------------------------------------- | 19 | 1 | 5 | |
| --------------------------CCTATTTTGTGCTGTCTTG------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------TGCAGAAGGAAGTAGGATG----------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------------TGGTCTGGTTATAATTTTG------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------TGCCATGGTCTGGTTATAA------------------ | 19 | - | 1 | |
| rat | cacctccactgtgctgactgtccaagcctattttgtgctgtcttgcctgtgaacttccTGCCTTTGCAGAAGGAAGTaggatgccatggtctggttataattttgttcagttgaagtg | |||
| ********************************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044862 ENSRNOG00000032704 | |||
| rat | (((.((.((((.((.......(((..((.....((.((.(((((((.......(((.((((....)))))))...))))))))))).))..)))..........)).)))).)).))) | 0.970 -29.33 | ||
| rat | chromosome:1:51350202:51350319:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
sblock458 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.32/0.47 | 19/19/0.00 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 5 1 1 1 | 0 0 0 0 0 | 1 2 1 1 1 | 0 0 0 0 0 | 26 58 35 18 13 | 16 -16 -1 16 21 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 17 21 23 23 23 | nd nd nd nd nd | 0.37 0.37 0.16 0.53 0.63 | 5 4 3 7 10 | 10 | 2 | -12 | -11 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------GCCUUUG---------------------------------------------------- | 6 | novel | |
| seed | -----------------------------------------------------------------GCAGAAG---------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GGUCUGG------------------------ | 1 | novel | |
| seed | ----------------------------------------------------------------------------------GCCAUGG----------------------------- | 1 | novel | |
| seed | ---------------------------CUAUUUU------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------TGCCTTTGCAGAAGGAAGT----------------------------------------- | 19 | 1 | 5 | |
| --------------------------CCTATTTTGTGCTGTCTTG------------------------------------------------------------------------- | 19 | - | 1 | |
| ----------------------------------------------------------------TGCAGAAGGAAGTAGGATG----------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------------TGGTCTGGTTATAATTTTG------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------TGCCATGGTCTGGTTATAA------------------ | 19 | - | 1 | |
| rat | cacctccactgtgctgactgtccaagcctattttgtgctgtcttgcctgtgaacttccTGCCTTTGCAGAAGGAAGTaggatgccatggtctggttataattttgttcagttgaagtg | |||
| ********************************************************************************************************************** | ||||
| rat | (((.((.((((.((.......(((..((.....((.((.(((((((.......(((.((((....)))))))...))))))))))).))..)))..........)).)))).)).))) | 0.970 -29.33 | ||
| rat | chromosome:1:52389128:52389245:-1 | intergenic |
sblock11674 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.024 | no | no | 0.32/0.47 | 19/21/0.25 | 0.0 0.7 0.2 | 0.0 1.3 0.0 | 1 3 8 | 0 0 0 | 1 2 1 | 0 0 0 | 9 18 3 | 3 -10 20 | 5arm 5arm_loop_3arm 3arm | 11 11 11 | nd nd nd | 0.16 0.21 0.42 | 2 4 4 | 12 | 3 | 12 | 11 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------GACAAAG-------------- | 6 | novel | ||
| seed | --------------------------------------------------------UGACAAA--------------- | 2 | novel | ||
| seed | -------------------CUCAGGA---------------------------------------------------- | 2 | novel | ||
| seed | ---------------------CAGGAAU-------------------------------------------------- | 1 | novel | ||
| seed | ----------UCUCUCU------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------------------------------------TGACAAAGGTTTTGCAGAG--- | 19 | - | - | 6 | |
| -------------------------------------------------------TTGACAAAGGTTTTGCAGAG--- | 20 | - | - | 2 | |
| ------------------TCTCAGGAATTAGAATACT----------------------------------------- | 19 | - | - | 2 | |
| ---------CTCTCTCTCTCTCAGGAAT-------------------------------------------------- | 19 | 1 | - | - | |
| --------------------TCAGGAATTAGAATACTAGAG------------------------------------- | 21 | - | 1 | - | |
| rat | ggtctgctcctctctctcTCTCAGGAATTAGAATACTagaggtttctgggggactTTGACAAAGGTTTTGCAGAGccc | ||||
| ****************************************************************************** | |||||
| rat | (((((((.(((.((..(((((((((((((((....)))...))))))))))))....))...)))....))))).)). | 0.970 -24.90 | |||
| rat | chromosome:8:57733223:57733300:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH (18 loci)
block132560 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.443 | no | no | 0.42/0.50 | 18/23/0.30 | 0.9 0.0 | 1.2 2.0 | 8 2 | 0 0 | 6 1 | 0 0 | 12 23 | -5 -15 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.57 | 3 9 | 10 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | --------------CCACAGA--------------------------------------------------- | 7 | novel | |||||
| seed | ------------------------UGGAAGU----------------------------------------- | 2 | novel | |||||
| seed | -------------CCCACAG---------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | |||
| -------------CCCACAGATACTGGAAGTT---------------------------------------- | 19 | - | - | 1 | 1 | - | 1 | |
| -------------CCCACAGATACTGGAAGT----------------------------------------- | 18 | - | - | - | - | 1 | 1 | |
| -------------CCCACAGATACTGGAAGTTT--------------------------------------- | 20 | - | 1 | - | - | - | - | |
| -----------------------CTGGAAGTTTTGCACTTAC------------------------------ | 19 | - | - | - | 1 | - | - | |
| ------------ACCCACAGATACTGGAAGT----------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------CCCACAGATACTGGAAGTTTTGC------------------------------------ | 23 | - | - | - | 1 | - | - | |
| -----------------------CTGGAAGTTTTGCACTTACGGTC-------------------------- | 23 | - | - | - | 1 | - | - | |
| rat | tctgctaatgagACCCACAGATACTGGAAGTTTTGCACTTACGGTCagcacttgcgggctttagaaaggaga | |||||||
| ************************************************************************ | ||||||||
| ---------------------------------------------------------------------------------- | ENSRNOT00000058978 ENSRNOG00000038635 | |||||||
| rat | (((.((..(((..(((.(((...((((..((.........))..))))...))).)))..)))...)).))) | 0.910 -15.90 | ||||||
| rat | chromosome:11:69977605:69977676:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000058977|ENSRNOG00000038635 ## Opposite_strand|Intronic_coding|ENSRNOT00000058978|ENSRNOG00000038635 ## ENSRNOG00000038635|protein_coding|| |
block202795 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.32/0.43 | 19/23/0.60 | 0.7 0.0 | 0.7 0.0 | 6 1 | 0 0 | 2 1 | 0 0 | 19 26 | -3 -8 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.32 0.48 | 3 6 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------UUCAUUU------------------------------------------------------ | 7 | novel | |
| seed | ----------------------CAUUUGA---------------------------------------------------- | 2 | novel | |
| seed | ---------------------------GAAACGA----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------CTTCATTTGAAACGAAAGCATTG--------------------------------------- | 23 | - | 4 | |
| ---------------------TCATTTGAAACGAAAGCAT----------------------------------------- | 19 | - | 2 | |
| -------------------CTTCATTTGAAACGAAAGC------------------------------------------- | 19 | 1 | 1 | |
| -------------------CTTCATTTGAAACGAAAGCA------------------------------------------ | 20 | - | 1 | |
| --------------------------TGAAACGAAAGCATTGCCTTG---------------------------------- | 21 | - | 1 | |
| rat | acttgggccacctgcagggCTTCATTTGAAACGAAAGCATTGccttgttaagtttgaggtggaaatgcagggccaggagtg | |||
| ********************************************************************************* | ||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||
| rat | ((((.(((..((((((....(((((((.((((...((((......))))..)))).)))))))..)))))))))..)))). | 1.000 -28.60 | ||
| rat | chromosome:12:43042828:43042908:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block234754 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.32/0.43 | 19/23/0.60 | 0.7 0.0 | 0.7 0.0 | 6 1 | 0 0 | 2 1 | 0 0 | 19 26 | -3 -8 | 5arm 5arm_loop_3arm | 2 2 | nd nd | 0.32 0.48 | 3 6 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------UUCAUUU------------------------------------------------------ | 7 | novel | |
| seed | ----------------------CAUUUGA---------------------------------------------------- | 2 | novel | |
| seed | ---------------------------GAAACGA----------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------CTTCATTTGAAACGAAAGCATTG--------------------------------------- | 23 | - | 4 | |
| ---------------------TCATTTGAAACGAAAGCAT----------------------------------------- | 19 | - | 2 | |
| -------------------CTTCATTTGAAACGAAAGC------------------------------------------- | 19 | 1 | 1 | |
| -------------------CTTCATTTGAAACGAAAGCA------------------------------------------ | 20 | - | 1 | |
| --------------------------TGAAACGAAAGCATTGCCTTG---------------------------------- | 21 | - | 1 | |
| rat | acttgggccacctgcagggCTTCATTTGAAACGAAAGCATTGccttgttaagtttgaggtggaaatgcagggccaggagtg | |||
| ********************************************************************************* | ||||
| rat | ((((.(((..((((((....(((((((.((((...((((......))))..)))).)))))))..)))))))))..)))). | 1.000 -28.60 | ||
| rat | chromosome:12:44300209:44300289:1 | intergenic |
block712808 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.37/0.58 | 19/21/0.17 | 0.0 0.0 0.0 | 0.0 0.0 0.7 | 1 7 3 | 0 0 0 | 1 2 1 | 0 0 0 | 33 24 17 | -17 -3 2 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.53 0.47 0.48 | 6 3 6 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------GGUUUAC----------------------------------- | 8 | miR-299 | |
| seed | --------------------------------------------ACUCCGA------------------------------ | 3 | novel | |
| seed | ----------------------------------AGAAUGG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| --------------------------------------TGGTTTACTCCGATGCTGG------------------------ | 19 | 1 | 7 | |
| -------------------------------------------TACTCCGATGCTGGCATGGGT----------------- | 21 | - | 2 | |
| ---------------------------------AAGAATGGTTTACTCCGAT----------------------------- | 19 | - | 1 | |
| -------------------------------------------TACTCCGATGCTGGCATGG------------------- | 19 | - | 1 | |
| rat | tactggtaataagaggaaccgaagctaaggagaaagaaTGGTTTACTCCGATGCTGGcatgggttagagaagtatccggtg | |||
| ********************************************************************************* | ||||
| rat | ((((((..........((((..(((...(((((((......))).))))...)))......))))..........)))))) | 0.950 -18.15 | ||
| rat | chromosome:18:63560170:63560250:-1 | intergenic |
block1413256 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.190 | no | no | 0.32/0.43 | 19/21/0.03 | 0.0 0.7 0.0 | 0.0 0.7 0.0 | 1 25 5 | 0 0 0 | 1 4 1 | 0 0 0 | 37 30 25 | -14 -8 -1 | 5arm_loop_3arm 3arm_loop 3arm | 2 2 2 | nd nd nd | 0.43 0.53 0.32 | 8 5 3 | 37 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------GACAUGG----------------------------------------- | 18 | novel | |||
| seed | ---------------------------------------------CUGACAU------------------------------------------- | 12 | novel | |||
| seed | ----------------------------------------------------GGGAGAU------------------------------------ | 5 | novel | |||
| seed | ----------------------------------------------UGACAUG------------------------------------------ | 1 | novel | |||
| seed | --------------------------------------UCUUUCU-------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S2 | T5S1 | |||
| ----------------------------------------------TGACATGGGAGATATCATA------------------------------ | 19 | 1 | - | 1 | 16 | |
| --------------------------------------------TCTGACATGGGAGATATCA-------------------------------- | 19 | 1 | 2 | - | 9 | |
| ---------------------------------------------------TGGGAGATATCATATAACT------------------------- | 19 | - | - | - | 5 | |
| -------------------------------------TTCTTTCTCTGACATGGGAGA------------------------------------- | 21 | - | - | - | 1 | |
| ---------------------------------------------CTGACATGGGAGATATCAT------------------------------- | 19 | - | - | - | 1 | |
| rat | gtttgcatttggtaaacctggctttttgagttttgaattctttcTCTGACATGGGAGATATCATATAACTaagtagtatagtatcaatacaggcc | |||||
| *********************************************************************************************** | ||||||
| rat | (((((...((((((......(((.....((((.(((..((((((........))))))..)))...))))....)))....))))))..))))). | 0.770 -19.30 | ||||
| rat | chromosome:3:140680486:140680580:-1 | intergenic |
block1487679 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.196 | no | no | 0.61/0.74 | 18/23/0.08 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 6 1 2 | 0 0 0 | 4 1 1 | 0 0 0 | 16 12 6 | -15 -3 3 | 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.53 0.42 0.47 | 5 3 6 | 13 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -----------------CCCAGUC----------------------------- | 9 | novel | |||
| seed | -----------------------------GUGCAGG----------------- | 2 | novel | |||
| seed | -----------------------CAGGCAG----------------------- | 1 | novel | |||
| seed | ----------GCCAGCU------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T4S1 | T4S2 | T5S1 | |||
| ----------------TCCCAGTCAGGCAGTGCAG------------------ | 19 | 1 | - | 2 | 4 | |
| ----------------TCCCAGTCAGGCAGTGCA------------------- | 18 | - | 1 | - | 1 | |
| ----------------------------AGTGCAGGCAGGGCTGCGC------ | 19 | - | - | - | 2 | |
| ---------TGCCAGCTCCCAGTCAGGCAGTG--------------------- | 23 | - | - | - | 1 | |
| ----------------------TCAGGCAGTGCAGGCAGGG------------ | 19 | - | - | - | 1 | |
| rat | agggggacctgccagcTCCCAGTCAGGCAGTGCAGGCAGGGCTGCGCccgctc | |||||
| ***************************************************** | ||||||
| rat | ((.(((.((((((.(((.((.....)).)))...))))))......))).)). | 0.950 -22.10 | ||||
| rat | chromosome:3:115213184:115213236:1 | intergenic |
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