other hairpins
novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH (18 loci)
sblock7171 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.926 | no | no | 0.21/0.46 | 19/26/0.39 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 6 4 1 7 | 0 0 0 0 | 4 1 1 2 | 0 0 0 0 | 1 31 38 20 | 26 -3 -14 2 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.42 0.43 0.32 | 6 4 4 3 | 28 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------------------------------------------------GGAAUGU------------------------------- | 8 | miR-1/206 | ||||
| seed | --AGCAUAG----------------------------------------------------------------------------------- | 7 | novel | ||||
| seed | --------------------------------AGGUUAU----------------------------------------------------- | 4 | miR-154 | ||||
| seed | -GAGCAUA------------------------------------------------------------------------------------ | 3 | novel | ||||
| seed | -------AGCAGAC------------------------------------------------------------------------------ | 2 | novel | ||||
| seed | ------------------------------------------------ACGCAUG------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------AAUAUAU---------------------------------------------- | 1 | novel | ||||
| seed | ---GCAUAGC---------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T4S2 | T5S1 | |||
| -----------------------------------------------------TGGAATGTACCTAGACCTT-------------------- | 19 | - | 1 | - | - | 7 | |
| -GAGCATAGCAGACTGTTAGA----------------------------------------------------------------------- | 20 | - | - | - | - | 6 | |
| -------------------------------TAGGTTATAATATATGTAC------------------------------------------ | 19 | - | - | - | - | 4 | |
| -----------------------------------------------TACGCATGGAATGTACCTAGACCTT-------------------- | 25 | - | - | - | - | 2 | |
| ------TAGCAGACTGTTAGATGTTGGCCA-------------------------------------------------------------- | 24 | 1 | - | - | - | - | |
| TGAGCATAGCAGACTGTTAGATGTTG------------------------------------------------------------------ | 26 | - | - | - | - | 1 | |
| ------TAGCAGACTGTTAGATGTTG------------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| TGAGCATAGCAGACTGTTA------------------------------------------------------------------------- | 19 | - | - | - | - | 1 | |
| -GAGCATAGCAGACTGTTAGATGTTG------------------------------------------------------------------ | 25 | - | - | 1 | - | - | |
| TGAGCATAGCAGACTGTTAGATGT-------------------------------------------------------------------- | 24 | - | - | - | - | 1 | |
| --AGCATAGCAGACTGTTAGATGTT------------------------------------------------------------------- | 23 | - | - | - | 1 | - | |
| --------------------------------------TAATATATGTACGCATGGAATGT------------------------------- | 23 | - | - | - | - | 1 | |
| rat | tGAGCATAGCAGACTGTTAGAtgttggccatTAGGTTATAATATATGTACgcaTGGAATGTACCTAGACCTTacccagtccagtcctggagc | ||||||
| ******************************************************************************************** | |||||||
| rat | ...((.(((..(((((......((.((...(((((.((((...((((....))))...))))))))).))..))......))))))))..)) | 0.490 -16.20 | |||||
| rat | chromosome:20:5549192:5549283:1 | intergenic |
sblock9072 [novel_lenNOK_cloningOK_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.729 | no | no | 0.33/0.54 | 18/24/0.67 | 0.0 0.0 0.0 0.0 | 1.5 0.0 0.0 0.0 | 2 1 4 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 1 32 44 1 | 31 -1 -12 33 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 2 | nd nd nd nd | 0.44 0.45 0.52 0.44 | 3 5 6 2 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------ACUCAGG----------------------------------------------------------- | 6 | novel | |
| seed | --GACAAGG------------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | -------------------------------------------AUACUCA------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------GACCAGC----------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------------CUGUCAA----------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------TACTCAGGACAGAGCTCAGAG---------------------------------------------- | 21 | - | 4 | |
| ------------------------------------------TATACTCAGGACAGAGCTC-------------------------------------------------- | 19 | 1 | 1 | |
| --------------------------------------------TACTCAGGACAGAGCTCAGAGAC-------------------------------------------- | 23 | - | 1 | |
| -TGACAAGGTGCTGCAAGA-------------------------------------------------------------------------------------------- | 18 | - | 1 | |
| -TGACAAGGTGCTGCAAGAGAG----------------------------------------------------------------------------------------- | 21 | - | 1 | |
| --------------------------------TGACCAGCTATATACTCAGGAC--------------------------------------------------------- | 22 | 1 | - | |
| --------------------------------------------------------------------------------------------TCTGTCAAAATAGGTGAT- | 18 | - | 1 | |
| --------------------------------------------TACTCAGGACAGAGCTCAGAGACC------------------------------------------- | 24 | 1 | - | |
| rat | gtgacaaggtgctgcaagagagggtctggaggtgaccagctataTACTCAGGACAGAGCTCAGAGaccaggccaggtcactcacccgcctcctctgtcaaaataggtgatg | |||
| *************************************************************************************************************** | ||||
| rat | ((.((...((..((..((((..(((..((.(((((((.(((.....(((..((......)).)))....)))..)))))))..)).)))..))))..))..))..)).)). | 0.830 -29.00 | ||
| rat | chromosome:4:164251009:164251119:1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (18 loci)
sblock10117 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.878 | no | no | 0.26/0.47 | 19/24/0.38 | 0.0 0.0 0.0 1.0 2.3 | 0.0 0.0 0.0 3.0 4.0 | 1 1 1 2 3 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 0 6 31 35 0 | 28 21 -3 -13 5 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.74 0.50 0.53 0.30 0.33 | 13 7 4 4 3 | 8 | 1 | 6 | 0 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------------------CUGAAUC------------------ | 2 | novel |
| seed | ----------------------------------------------------------------CCAGCGU----------- | 1 | novel |
| seed | ------------------------------------UUAGCAA--------------------------------------- | 1 | novel |
| seed | -------AUGAUAA-------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------AGCAACA------------------------------------- | 1 | novel |
| seed | --------------------------------CCCCUUA------------------------------------------- | 1 | novel |
| seed | -AUGAUGA-------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------------------TCTGAATCCCAGCGTTGATTTTTT-- | 24 | 1 | |
| -----------------------------------CTTAGCAACAAGTAACCTC---------------------------- | 19 | 1 | |
| TATGATGATGATAATGAGA--------------------------------------------------------------- | 19 | 1 | |
| -------------------------------------TAGCAACAAGTAACCTCGTTCTG---------------------- | 23 | 1 | |
| ------GATGATAATGAGATGAGAGA-------------------------------------------------------- | 20 | 1 | |
| -------------------------------TCCCCTTAGCAACAAGTAA-------------------------------- | 19 | 1 | |
| --------------------------------------------------------TCTGAATCCCAGCGTTGAT------- | 19 | 1 | |
| ---------------------------------------------------------------CCCAGCGTTGATTTTTTCA | 19 | 1 | |
| rat | TATGATGATGATAATGAGATGAGAGAtgcctTCCCCTTAGCAACAAGTAACCTCGTTCTGAATCCCAGCGTTGATTTTTTCA | ||
| ********************************************************************************** | |||
| rat | ..............(((((.((..(((((.......((((.(((.((....)).)))))))......)))))..)).))))) | 0.940 -11.32 |
| rat | chromosome:6:122568909:122568990:-1 | intergenic |
sblock3893 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.038 | no | no | 0.36/0.50 | 18/24/0.60 | 0.0 0.0 1.5 | 0.0 2.0 2.0 | 1 2 2 | 0 0 0 | 1 1 2 | 0 0 0 | 19 24 26 | 12 4 -2 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.37 0.36 0.26 | 5 5 4 | 5 | 3 | 0 | -3 |
| reads | miRBase family seed | ||||
| seed | -------------------------CGGAAGG------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------CAGUGUG--------------------------------------------- | 1 | novel | ||
| seed | --------------------GCUUUCG------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------UGUGUUU------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S2 | T5S1 | |||
| -------------------------------------------------------GTGTGTTTCGAGGAGCCTTTACTG-------------------------- | 24 | - | 1 | - | |
| -------------------TGCTTTCGGAAGGATTTCT------------------------------------------------------------------- | 19 | 1 | - | - | |
| ----------------------------------------------------TCAGTGTGTTTCGAGGAGCCTTT------------------------------ | 23 | - | - | 1 | |
| ------------------------TCGGAAGGATTTCTATAGTACA----------------------------------------------------------- | 22 | - | - | 1 | |
| ------------------------TCGGAAGGATTTCTATAG--------------------------------------------------------------- | 18 | - | - | 1 | |
| rat | ttttgttaatggcaagtctTGCTTTCGGAAGGATTTCTATAGTACAtgctttTCAGTGTGTTTCGAGGAGCCTTTACTGctccaaagaggtgccttgggcagaac | ||||
| ********************************************************************************************************* | |||||
| rat | (((((((...((((..((((((.....(((((.(((((.....(((((((....)))))))....))))))))))...))....))))..))))...))))))). | 0.780 -31.30 | |||
| rat | chromosome:13:73633204:73633308:1 | intergenic |
sblock3987 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.326 | no | no | 0.55/0.70 | 18/20/0.33 | 0.7 2.0 0.0 0.5 | 0.0 1.5 0.0 0.5 | 3 2 2 2 | 0 0 0 0 | 3 2 1 2 | 0 0 0 0 | 37 45 25 20 | -2 -13 -4 1 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.56 0.65 0.47 0.28 | 4 9 5 5 | 9 | 6 | -2 | 1 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------UCAGCUU----------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------------CCCGGCC------------------------------------ | 2 | novel | |||||
| seed | -------------------------------------------------------------------CCGUAGA------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------CGGCAAA--------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------AAACCUC----------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------CCCGUAG------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------AGCUUGC--------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ------------------------------------------------------------CCCCGGCCCGTAGAAAGAC------------------------- | 19 | - | - | 2 | - | - | - | |
| -------------------------------------ATCAGCTTGCGGCAAACCTC----------------------------------------------- | 20 | - | 1 | - | - | - | 1 | |
| ------------------------------------------------------------------CCCGTAGAAAGACCACCG-------------------- | 18 | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------GCCCGTAGAAAGACCACC--------------------- | 18 | 1 | - | - | - | - | - | |
| ---------------------------------------------GCGGCAAACCTCCTTCCCCG--------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------------CAAACCTCCTTCCCCGGCC------------------------------------ | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------CAGCTTGCGGCAAACCTC----------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| rat | cgggagtgagacttccggtggcgcaaagcgtgtcgggATCAGCTTGCGGCAAACCTCCTTCCCCGGCCCGTAGAAAGACCACCGttagcgccgcttctgctccc | |||||||
| ******************************************************************************************************** | ||||||||
| ..............................................................................................>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000000080 ENSRNOG00000000070 Dr1 | |||||||
| rat | .((((((.(((.....((((((((..((((.((.((......((.((((....((.........)).)))))).....)))))))).))))))))))))))))) | 0.600 -36.30 | ||||||
| rat | chromosome:14:2017277:2017380:-1 | intergenic |
sblock4760 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.152 | no | no | 0.58/0.65 | 18/26/0.17 | 1.7 0.0 0.0 | 0.7 0.0 0.0 | 3 2 1 | 0 0 0 | 2 1 1 | 0 0 0 | 0 17 3 | -5 -14 -7 | 5arm_loop 5arm_loop_3arm 3arm_loop | 1 2 2 | nd nd nd | 0.32 0.44 0.30 | 4 8 6 | 6 | 4 | 0 | -24 |
| reads | miRBase family seed | |||||
| seed | -CGCUCAC------------------------------------- | 2 | novel | |||
| seed | ------------------GCCUCUG-------------------- | 2 | novel | |||
| seed | ------ACUGUUU-------------------------------- | 1 | novel | |||
| seed | -----------------------UGGCUUG--------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S1 | T3S2 | T4S1 | |||
| CCGCTCACTGTTTCCGTGGCCTCTGG------------------- | 26 | - | 2 | - | - | |
| -----------------GGCCTCTGGCTTGGTATG---------- | 18 | 2 | - | - | - | |
| ----------------------CTGGCTTGGTATGGGGCAGT--- | 20 | - | - | 1 | - | |
| -----CACTGTTTCCGTGGCCTCT--------------------- | 19 | - | - | - | 1 | |
| rat | CCGCTCACTGTTTCCGTGGCCTCTGGCTTGGTATGGGGCAGTagc | |||||
| ********************************************* | ||||||
| rat | ..(((.((((.((((((.(((........)))))))))))))))) | 1.000 -15.90 | ||||
| rat | chromosome:16:40215570:40215614:-1 | intergenic |
sblock5376 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.62/0.79 | 18/24/0.29 | 0.0 1.8 0.5 | 0.0 1.2 1.0 | 1 4 2 | 0 0 0 | 1 3 2 | 0 0 0 | 5 27 21 | 9 -19 4 | 5arm 3arm_loop 3arm | 1 1 1 | nd nd nd | 0.25 0.47 0.42 | 5 4 5 | 7 | 4 | 0 | 13 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------AGGCGCG-------------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------CGGCACA--------------------------------- | 1 | novel | |||
| seed | ----------------------------------------CCAGGCG---------------------------------------- | 1 | novel | |||
| seed | -------------------------------------UGCCCAG------------------------------------------- | 1 | novel | |||
| seed | ------CCUAGCG-------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------GGCACAG-------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T2S2 | T3S1 | |||
| -----------------------------------------CAGGCGCGGCACAGAGCAC--------------------------- | 19 | - | 2 | - | - | |
| ---------------------------------------CCCAGGCGCGGCACAGAGC----------------------------- | 19 | - | - | - | 1 | |
| -----GCCTAGCGCCTGGTTCAAACCCTC---------------------------------------------------------- | 24 | - | - | - | 1 | |
| -----------------------------------------------CGGCACAGAGCACAGGAAC--------------------- | 19 | - | 1 | - | - | |
| ----------------------------------------------GCGGCACAGAGCACAGGA----------------------- | 18 | 1 | - | - | - | |
| ------------------------------------CTGCCCAGGCGCGGCACAGAG------------------------------ | 21 | - | - | 1 | - | |
| rat | ggttcGCCTAGCGCCTGGTTCAAACCCTCgctgatcCTGCCCAGGCGCGGCACAGAGCACAGGAACccaggcagtcctgggcagcca | |||||
| *************************************************************************************** | ||||||
| rat | ((((.((((((.(((((((((.....(((((((..(((....)))..))))...))).....))))).))))....)))))))))). | 0.980 -37.80 | ||||
| rat | chromosome:17:61088724:61088810:1 | intergenic ## {SimpF: oe = 0.74 1 CpG} |
sblock5527 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.37/0.56 | 19/25/0.60 | 0.0 5.7 0.0 | 0.0 5.3 0.0 | 1 3 1 | 0 0 0 | 1 1 1 | 0 0 0 | 2 12 8 | 5 -12 10 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.32 0.29 0.42 | 6 5 4 | 5 | 1 | 12 | 0 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------GGAUGCA------------------- | 1 | novel |
| seed | ---------------------UGUGAAU---------------------------------------------- | 1 | novel |
| seed | ---GAGCCAC---------------------------------------------------------------- | 1 | novel |
| seed | ----------------------GUGAAUU--------------------------------------------- | 1 | novel |
| seed | -------------GGUGUCC------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --TGAGCCACCGTGGTGTCCTTGTGAA----------------------------------------------- | 25 | 1 | |
| --------------------TTGTGAATTCCTTAGATGGGGGTT------------------------------ | 24 | 1 | |
| ------------TGGTGTCCTTGTGAATTCCTTAGA-------------------------------------- | 24 | 1 | |
| -----------------------------------------------GGGATGCATAATATGGATA-------- | 19 | 1 | |
| ---------------------TGTGAATTCCTTAGATGGGGGTT------------------------------ | 23 | 1 | |
| rat | gcTGAGCCACCGTGGTGTCCTTGTGAATTCCTTAGATGGGGGTTagaGGGATGCATAATATGGATAtaaaagca | ||
| ************************************************************************** | |||
| rat | (((......(((((((((((((.((.((((((.....)))))))).))))))))....))))).......))). | 0.990 -22.22 |
| rat | chromosome:18:63559871:63559944:-1 | intergenic |
sblock5900 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.680 | no | no | 0.26/0.63 | 19/23/0.43 | 0.0 1.6 0.0 | 0.0 0.8 0.0 | 1 5 1 | 0 0 0 | 1 1 1 | 0 0 0 | 15 34 19 | 4 -19 0 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.26 0.43 0.25 | 3 8 4 | 7 | 1 | -2 | -3 |
| reads | miRBase family seed | ||
| seed | -----------------------------------AAGAAAC------------------------------------------- | 2 | novel |
| seed | --------------------------------------AAACGUG---------------------------------------- | 2 | novel |
| seed | ----------------GUGCUCG-------------------------------------------------------------- | 1 | novel |
| seed | -------------------------------------GAAACGU----------------------------------------- | 1 | novel |
| seed | -----------------------------------------------UUUAGUU------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------GAAACGTGACTTTAGTTTT----------------------------- | 19 | 2 | |
| ----------------------------------TAAGAAACGTGACTTTAGTTTTT---------------------------- | 23 | 2 | |
| ----------------------------------------------CTTTAGTTTTTAAGGTGAGT------------------- | 20 | 1 | |
| ---------------TGTGCTCGGGAAGGGCTCT--------------------------------------------------- | 19 | 1 | |
| ------------------------------------AGAAACGTGACTTTAGTTT------------------------------ | 19 | 1 | |
| rat | gacagagcttggtttTGTGCTCGGGAAGGGCTCTTAAGAAACGTGACTTTAGTTTTTAAGGTGAGTatttggaaatcctcttgtt | ||
| ************************************************************************************* | |||
| rat | (((((((...(((((((((((((..(((((((...(((........))).)))))))....)))))))...)))))))))).))) | 0.680 -16.20 |
| rat | chromosome:19:40008372:40008456:1 | intergenic |
sblock6162 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.706 | no | no | 0.44/0.75 | 18/22/0.25 | 0.0 2.3 0.0 | 0.0 1.3 0.0 | 1 6 1 | 0 0 0 | 1 4 1 | 0 0 0 | 20 27 18 | 7 -8 2 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.39 0.45 0.28 | 4 3 4 | 8 | 4 | 0 | 12 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------CCUGAGC--------------------------------------------------------- | 4 | novel | |||
| seed | ---------------------CAGGCUG------------------------------------------------------------------------ | 1 | novel | |||
| seed | ------------------------------CUGGAAC--------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------CGCUGGA----------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------UAGGACA---------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S2 | T5S1 | |||
| -----------------------------------ACCTGAGCCGCCACACCT----------------------------------------------- | 18 | 2 | - | 2 | - | |
| -----------------------------GCTGGAACCTGAGCCGCCACAC------------------------------------------------- | 22 | - | - | - | 1 | |
| ---------------------------GCGCTGGAACCTGAGCCGCC----------------------------------------------------- | 20 | - | 1 | - | - | |
| --------------------ACAGGCTGCGCTGGAACC-------------------------------------------------------------- | 18 | 1 | - | - | - | |
| ----------------------------------------------------------------ATAGGACAGCGCAGAAAT------------------ | 18 | - | - | - | 1 | |
| rat | cggcgcgcctgactggtgatACAGGCTGCGCTGGAACCTGAGCCGCCACACCTtgcacaagacgATAGGACAGCGCAGAAATttactatttattttcgtc | |||||
| **************************************************************************************************** | ||||||
| rat | .((((....(((.((((((......((((((((...((((...((.................)).)))).))))))))....)))))).)))....)))) | 0.700 -24.93 | ||||
| rat | chromosome:2:189417243:189417342:-1 | intergenic |
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