other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_loopOverlap_bulgeHIGH (18 loci)
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH (18 loci)
sblock10212 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.034 | no | no | 0.63/0.68 | 18/19/0.00 | 1.5 1.0 | 1.5 0.7 | 2 3 | 0 0 | 1 2 | 0 0 | 10 0 | 7 21 | 5arm 3arm | 13 14 | nd nd | 0.11 0.21 | 1 3 | 5 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------CGAGACU------------- | 2 | novel | |
| seed | --------------------------------------------------------------------GACUCCG---------- | 1 | novel | |
| seed | -----------AAGGGUC------------------------------------------------------------------- | 1 | novel | |
| seed | --------------GGUCUGG---------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------------------------TCGAGACTCCGTGAAGGGC-- | 19 | 2 | - | |
| ----------GAAGGGTCTGGAGTGGGTC-------------------------------------------------------- | 19 | - | 1 | |
| -------------GGGTCTGGAGTGGGTCGCA----------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------AGACTCCGTGAAGGGCCG | 18 | - | 1 | |
| rat | aggctccaacGAAGGGTCTGGAGTGGGTCGCAtacattagtactggtggtggtagcacttactaTCGAGACTCCGTGAAGGGCCG | |||
| ************************************************************************************* | ||||
| rat | .(((((..(((..((((((.((((((((.((((.(((((....)))))...)).))))))))..)).)))))))))...))))). | 1.000 -31.30 | ||
| rat | chromosome:6:139497547:139497631:-1 | intergenic |
sblock10215 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.63/0.68 | 18/19/0.00 | 1.5 1.0 | 1.5 0.7 | 2 3 | 0 0 | 1 2 | 0 0 | 22 15 | 7 18 | 5arm 3arm | 13 14 | nd nd | 0.16 0.21 | 1 3 | 5 | 2 | 10 | 10 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------CGAGACU---------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------------------GACUCCG------------------------- | 1 | novel | |
| seed | --------------------------GGUCUGG------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------AAGGGUC---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------------------------------------TCGAGACTCCGTGAAGGGC----------------- | 19 | 2 | - | |
| ----------------------GAAGGGTCTGGAGTGGGTC----------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------------------AGACTCCGTGAAGGGCCG--------------- | 18 | - | 1 | |
| -------------------------GGGTCTGGAGTGGGTCGCA-------------------------------------------------------------------- | 19 | - | 1 | |
| rat | cctgggtccgccaggctccaacGAAGGGTCTGGAGTGGGTCGCAaccattagtactagtggtggtagcacttactaTCGAGACTCCGTGAAGGGCCGattcactatctccag | |||
| **************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000050290 ENSRNOG00000029020 | |||
| rat | .(((((.......(((((..(((..((((((.((((((((.((.(((((((.......))))))).))))))))..)).)))))))))...)))))...........))))) | 0.410 -38.57 | ||
| rat | chromosome:6:140036424:140036535:-1 | Same_strand|Intronic_coding|ENSRNOT00000050290|ENSRNOG00000029020 ## ENSRNOG00000029020|protein_coding|| |
sblock10314 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.228 | no | no | 0.42/0.58 | 19/22/0.33 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 7 18 | 8 2 | 5arm 3arm | 123 129 | nd nd | 0.16 0.21 | 1 2 | 3 | 3 | -6 | -5 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------GCACAGU----------------------------- | 1 | novel | ||
| seed | ------------------------------------------ACGGCAC-------------------------------- | 1 | novel | ||
| seed | --------AUGUUCC------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| -------CATGTTCCAGTATGACTCT------------------------------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------AACGGCACAGTCAAGGCTGAGA------------------ | 22 | - | 1 | - | |
| --------------------------------------------GGCACAGTCAAGGCTGAGA------------------ | 19 | 1 | - | - | |
| rat | tggtctaCATGTTCCAGTATGACTCTgcccatggcaagttcAACGGCACAGTCAAGGCTGAGAatgggaagcttatcacca | ||||
| ********************************************************************************* | |||||
| rat | .(((((...(((((((((.(((((.((((..(((.....)))..)))).)))))..)))).)))))...))......))). | 0.630 -20.90 | |||
| rat | chromosome:6:80063433:80063513:1 | intergenic |
sblock11339 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.933 | no | no | 0.42/0.58 | 19/24/0.50 | 0.5 1.5 | 3.0 0.0 | 2 2 | 0 0 | 2 2 | 0 0 | 6 10 | 2 2 | 5arm 3arm | 123 129 | nd nd | 0.26 0.32 | 3 3 | 4 | 3 | 0 | -5 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------GCACAGU--------------------- | 1 | novel | ||
| seed | --------UGUUCCA--------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------ACGGCAC------------------------ | 1 | novel | ||
| seed | -------AUGUUCC---------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| ------CATGTTCCAGTATGACTCT----------------------------------------------- | 19 | - | - | 1 | |
| ----------------------------------------AACGGCACAGTCAAGGCTGAGA---------- | 22 | - | 1 | - | |
| -------------------------------------------GGCACAGTCAAGGCTGAGA---------- | 19 | 1 | - | - | |
| -------ATGTTCCAGTATGACTCTACCCAC----------------------------------------- | 24 | 1 | - | - | |
| rat | ggtctaCATGTTCCAGTATGACTCTACCCACggcaagttcAACGGCACAGTCAAGGCTGAGAatggaagctt | ||||
| ************************************************************************ | |||||
| rat | ((.((...(((((((((.(((((...((...((.....))...))...)))))..)))).)))))..)))). | 0.880 -11.80 | |||
| rat | chromosome:7:100952247:100952318:1 | intergenic |
sblock12039 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.279 | no | no | 0.43/0.67 | 18/23/0.50 | 0.0 1.3 | 0.0 0.0 | 1 3 | 0 0 | 1 2 | 0 0 | 14 0 | 3 16 | 5arm 3arm | 1 20 | nd nd | 0.28 0.32 | 2 3 | 4 | 3 | 8 | 12 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------AUUCCUA--------------- | 2 | novel | ||
| seed | ---------------UGAGGAG----------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------CUACUGG----------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S1 | T5S1 | |||
| ----------------------------------------------------------AATTCCTACTGGGTTGGTGAAGA | 23 | - | - | 2 | |
| --------------CTGAGGAGAGAGCTGGGG------------------------------------------------- | 18 | 1 | - | - | |
| --------------------------------------------------------------CCTACTGGGTTGGTGAAGA | 19 | - | 1 | - | |
| rat | ccttcagtccgttcCTGAGGAGAGAGCTGGGGgccattgtggggctttgaaagtcctgAATTCCTACTGGGTTGGTGAAGA | ||||
| ********************************************************************************* | |||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000057742 ENSRNOG00000017714 Usp3 | ||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000023882 ENSRNOG00000017714 Usp3 | ||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000057739 ENSRNOG00000017714 Usp3 | ||||
| rat | .(((((..(((..((..(((((((..((.((((((.......))))))...))..))...)))))...))..)))))))). | 0.490 -25.00 | |||
| rat | chromosome:8:70860098:70860178:1 | Opposite_strand|Intronic_coding|ENSRNOT00000057742|ENSRNOG00000017714 ## ENSRNOG00000017714|protein_coding|Usp3|ubiquitin specific peptidase 3 Gene [Source:MGI (curated);Acc:Usp3-001] |
sblock12754 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.913 | no | no | 0.35/0.53 | 19/20/0.17 | 2.6 0.0 | 2.4 0.0 | 5 1 | 0 0 | 4 1 | 0 0 | 7 12 | 4 19 | 5arm 3arm | 73 88 | nd nd | 0.16 0.37 | 2 3 | 6 | 4 | 5 | 2 |
| reads | miRBase family seed | |||||
| seed | --------------AGAUAUG---------------------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------------------------------UAAGUCU----------------------- | 1 | novel | |||
| seed | ---------AUGACAG--------------------------------------------------------------------------- | 1 | novel | |||
| seed | --------AAUGACA---------------------------------------------------------------------------- | 1 | novel | |||
| seed | ------------ACAGAUA------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T4S2 | T5S1 | |||
| -------------CAGATATGACGAGATCCGC----------------------------------------------------------- | 19 | 2 | - | - | - | |
| -----------GACAGATATGACGAGATCC------------------------------------------------------------- | 19 | - | - | 1 | - | |
| -------TAATGACAGATATGACGAGA---------------------------------------------------------------- | 20 | - | - | - | 1 | |
| --------AATGACAGATATGACGAGA---------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ------------------------------------------------------------CTAAGTCTGTGGCTCGCAT------------ | 19 | - | - | - | 1 | |
| rat | ccaattaTAATGACAGATATGACGAGATCCGCcgccactggggaggcaacgtcctgggtcCTAAGTCTGTGGCTCGCATtgctaagctgga | |||||
| ******************************************************************************************* | ||||||
| rat | (((.((((((((..((.((((((..((((((((.((.....)).)))........)))))....))).))).))..))))).)))..))). | 0.550 -21.10 | ||||
| rat | chromosome:X:5758012:5758102:1 | intergenic |
sblock1524 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.114 | no | no | 0.36/0.53 | 19/22/0.50 | 0.0 0.0 2.0 | 0.0 0.0 0.5 | 1 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 18 26 11 | 19 4 18 | 5arm 3arm 3arm | 22 24 24 | nd nd nd | 0.37 0.50 0.23 | 6 10 3 | 4 | 2 | -16 | -13 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------GUAGCCA-------------------------- | 1 | novel | |
| seed | -------------------GACAGUA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------UUGUCUU---------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------------CCAUACU---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| ------------------TGACAGTAGATCCAGGCTG---------------------------------------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------------------------------CTTGTCTTTCACTATGTAGCCA-------------------------- | 22 | - | 1 | |
| -----------------------------------------------------------------------------------GCCATACTTTCAGATACAT----------- | 19 | 1 | - | |
| -------------------------------------------------------------------------------TGTAGCCATACTTTCAGATACA------------ | 22 | 1 | - | |
| rat | gtatttattctgtgccccTGACAGTAGATCCAGGCTGctaacatctgcataagtatttcccatgcCTTGTCTTTCACTATGTAGCCATACTTTCAGATACATtaatgaagaca | |||
| ***************************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | ((.((((((..(((...((((.((((......((((((..........((((((((.....)))).))))..........)))))).)))).))))...))).)))))).)). | 0.940 -22.05 | ||
| rat | chromosome:1:51657438:51657550:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
sblock200 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.356 | no | no | 0.45/0.55 | 19/24/0.50 | 0.0 0.0 3.0 | 0.0 0.0 1.0 | 4 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 34 26 8 | 8 0 14 | 5arm 3arm 3arm | 44 44 44 | nd nd nd | 0.42 0.18 0.42 | 6 2 6 | 8 | 2 | -5 | 3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------GAGCACA---------------------------------------------------------------------------- | 4 | novel | |
| seed | -------------------------------------------------------------------------------------CCUUCUG-------------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------------GCAUGUU-------------------- | 1 | novel | |
| seed | ---------------------------------AUGAGCA------------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------GUACCUG---------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------TGAGCACAGAGCAAACTGG----------------------------------------------------------------- | 19 | - | 4 | |
| ------------------------------------------------------------------------------------------TGCATGTTCTCTGGACGATC-------- | 20 | - | 1 | |
| --------------------------------AATGAGCACAGAGCAAACTG------------------------------------------------------------------ | 20 | - | 1 | |
| ----------------------------------------------------------------------TGTACCTGGGTTGTGCCTTCTG-------------------------- | 22 | 1 | - | |
| ------------------------------------------------------------------------------------GCCTTCTGCATGTTCTCTGGACGA---------- | 24 | - | 1 | |
| rat | tatggggaactggaaaacagagacagaggaagaaTGAGCACAGAGCAAACTGGgatggacaaagcacaaatgtacctgggttgtgccttctgcatgttctctggacgatcgccttgtg | |||
| ********************************************************************************************************************** | ||||
| rat | ((..(((..........((((((((..(((((.....((((((......(((((....(((.........))).))))).)))))))))))...))).)))))........)))..)) | 0.770 -29.77 | ||
| rat | chromosome:1:49044493:49044610:-1 | intergenic |
sblock4104 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.229 | no | no | 0.48/0.58 | 18/21/0.40 | 1.5 0.0 0.0 | 0.5 0.0 0.0 | 2 1 2 | 0 0 0 | 2 1 1 | 0 0 0 | 5 18 8 | 30 10 22 | 5arm 3arm 3arm | 9 11 11 | nd nd nd | 0.33 0.43 0.21 | 3 6 2 | 5 | 3 | -3 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------------AAGUCUG------------------- | 2 | novel | ||
| seed | ------AGCAUGC-------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------AUGCAAG----------------------------------------------------------------------------------------------- | 1 | miR-300 | ||
| seed | -------------------------------------------------------------------------CCCAAAU------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S2 | |||
| ------------------------------------------------------------------------------------GAAGTCTGGTGATGCTGCC-------- | 19 | - | 2 | - | |
| ------------------------------------------------------------------------CCCCAAATTCTTGAAGTCTGG------------------ | 21 | - | 1 | - | |
| -----TAGCATGCAAGTTTGCCGAG-------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| --------CATGCAAGTTTGCCGAGC------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | tcacaTAGCATGCAAGTTTGCCGAGCttaaagagaagatagatcgtcgttctggtaagaagctggcagatggCCCCAAATTCTTGAAGTCTGGTGATGCTGCCattgttga | ||||
| *************************************************************************************************************** | |||||
| rat | (((((..(((.(((...((((((..(((...(((((........((((.((((.((......)).))))))))......))))).)))..))))))))))))...))).)) | 0.820 -27.74 | |||
| rat | chromosome:14:67223090:67223200:-1 | intergenic |
sblock427 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.116 | no | no | 0.35/0.50 | 19/20/0.50 | 0.0 2.8 | 0.0 2.4 | 1 5 | 0 0 | 1 1 | 0 0 | 6 15 | 24 15 | 5arm 3arm | 17 21 | nd nd | 0.20 0.26 | 2 2 | 6 | 1 | -9 | -8 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------GGUCAUU-------------------------- | 2 | novel |
| seed | -------------------------------------------------------------------------CGUGGUC----------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------UGCCGUG-------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------GCCGUGG------------------------------- | 1 | novel |
| seed | -------CUACUUG----------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------------------TGGTCATTATTGGATGGCA--------------- | 19 | 2 | |
| ------------------------------------------------------------------------CCGTGGTCATTATTGGATGG----------------- | 20 | 1 | |
| ----------------------------------------------------------------------TGCCGTGGTCATTATTGGA-------------------- | 19 | 1 | |
| ---------------------------------------------------------------------TTGCCGTGGTCATTATTGGA-------------------- | 20 | 1 | |
| ------TCTACTTGTTTTCGTCTCAA----------------------------------------------------------------------------------- | 20 | 1 | |
| rat | aaggtaTCTACTTGTTTTCGTCTCAAttattgaagatgatgttggagtggttaaccacaattgtcatcaTTGCCGTGGTCATTATTGGATGGCAtaagtgcttcttcct | ||
| ************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044862 ENSRNOG00000032704 | ||
| rat | .(((....(((((((..(((((.((((...(((.(((((((.....((((....))))......))))))).......)))..))))))))).)))))))......))) | 0.720 -26.20 |
| rat | chromosome:1:51350382:51350490:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
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