other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH (18 loci)
sblock4882 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.526 | no | no | 0.42/0.58 | 19/22/0.33 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 8 14 | 8 3 | 5arm 3arm | 123 129 | nd nd | 0.26 0.32 | 3 3 | 3 | 3 | -6 | -5 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------ACGGCAC---------------------------- | 1 | novel | ||
| seed | ----------------------------------------------GCACAGU------------------------- | 1 | novel | ||
| seed | ---------AUGUUCC-------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| --------CATGTTCCAGTATGACTCT--------------------------------------------------- | 19 | - | - | 1 | |
| ------------------------------------------AACGGCACAGTCAAGGCTGAGA-------------- | 22 | - | 1 | - | |
| ---------------------------------------------GGCACAGTCAAGGCTGAGA-------------- | 19 | 1 | - | - | |
| rat | atggtctaCATGTTCCAGTATGACTCTacccatggcgagctcAACGGCACAGTCAAGGCTGAGAatgggaagcccatc | ||||
| ****************************************************************************** | |||||
| rat | ((((.((...(((((((((.(((((...((...((....))....))...)))))..)))).)))))...)).)))). | 0.430 -17.90 | |||
| rat | chromosome:16:18713171:18713248:1 | intergenic |
sblock5377 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.551 | no | no | 0.50/0.58 | 18/22/0.33 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 4 14 | 15 2 | 5arm 3arm | 2 129 | nd nd | 0.28 0.26 | 4 3 | 3 | 3 | -14 | -11 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------ACGGCAC---------------------------- | 1 | novel | ||
| seed | ------------------------------------------------GCACAGU------------------------- | 1 | novel | ||
| seed | -----GUCUACA-------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T4S2 | |||
| ----GGTCTACATGTTCCAGTC---------------------------------------------------------- | 18 | 1 | - | - | |
| --------------------------------------------AACGGCACAGTCAAGGCTGAGA-------------- | 22 | - | - | 1 | |
| -----------------------------------------------GGCACAGTCAAGGCTGAGA-------------- | 19 | - | 1 | - | |
| rat | acatGGTCTACATGTTCCAGTCtgactctacccatggcaagttcAACGGCACAGTCAAGGCTGAGAatgggaagcttgtc | ||||
| ******************************************************************************** | |||||
| rat | (((...(((....((((((((((((((...((..(((.....)))..))...))))).))))).)))).)))....))). | 0.740 -18.00 | |||
| rat | chromosome:17:62876606:62876685:1 | intergenic |
sblock5964 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.056 | no | no | 0.48/0.56 | 18/21/0.67 | 1.5 0.0 | 0.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 5 22 | 29 12 | 5arm 3arm | 9 11 | nd nd | 0.30 0.43 | 3 6 | 3 | 3 | 0 | -15 |
| reads | miRBase family seed | ||||
| seed | ---------AUGCAAG--------------------------------------------------------------------------------------------------- | 1 | miR-300 | ||
| seed | -------------------------------------------------------------------------CCCAAAU----------------------------------- | 1 | novel | ||
| seed | ------AGCAUGC------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S2 | |||
| --------CATGCAAGTTTGCCGAGC----------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| ------------------------------------------------------------------------CCCCAAATTCTTGAAGTCTGG---------------------- | 21 | - | 1 | - | |
| -----TAGCATGCAAGTTTGCCGAG------------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| rat | ccacaTAGCATGCAAGTTTGCCGAGCttaaagagaagatcgatcatcgttctggtaagaagctggaagatggCCCCAAATTCTTGAAGTCTGGtgatgtgccattgttgacatgg | ||||
| ******************************************************************************************************************* | |||||
| rat | (((..(((((.(((...((((((..(((...(((((......(((((.(((..((.....))..)))))))).......))))).)))..))))))..)))...)))))...))) | 1.000 -32.72 | |||
| rat | chromosome:2:19567106:19567220:-1 | intergenic |
sblock6585 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.251 | no | no | 0.35/0.53 | 19/20/0.25 | 1.7 0.0 | 1.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 26 20 | 6 16 | 5arm 3arm | 73 88 | nd nd | 0.45 0.16 | 3 2 | 4 | 3 | 10 | 12 |
| reads | miRBase family seed | ||||
| seed | -------------------------------ACAGAUA-------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------------------UAAGUCU------------------------------- | 1 | novel | ||
| seed | ---------------------------AAUGACA------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------AUGACAG----------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S2 | T5S1 | |||
| ---------------------------AATGACAGATATGACGAGA------------------------------------------------------------------------ | 19 | 1 | - | - | |
| ------------------------------GACAGATATGACGAGATCC--------------------------------------------------------------------- | 19 | - | 1 | - | |
| -------------------------------------------------------------------------------CTAAGTCTGTGGCTCGCAT-------------------- | 19 | - | - | 1 | |
| --------------------------TAATGACAGATATGACGAGA------------------------------------------------------------------------ | 20 | - | - | 1 | |
| rat | tgctctggctaagctggtggaagctaTAATGACAGATATGACGAGATCCactgccactgggaaggcaacatccttggtcCTAAGTCTGTGGCTCGCATtgccaagctggaaaaggcaa | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((..(((..((.((((..(((((((..(((...((.(((.((......((((........))))......)).))).)).))))))))))..))))))..)))..))....))). | 0.680 -31.50 | |||
| rat | chromosome:2:206105395:206105512:1 | intergenic |
sblock7431 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.164 | no | no | 0.48/0.58 | 18/21/0.40 | 1.5 0.0 0.0 | 0.5 0.0 0.0 | 2 1 2 | 0 0 0 | 2 1 1 | 0 0 0 | 10 22 12 | 29 12 24 | 5arm 3arm 3arm | 9 11 11 | nd nd nd | 0.33 0.43 0.21 | 3 6 2 | 5 | 3 | -3 | 2 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------------AAGUCUG----------------------- | 2 | novel | ||
| seed | -----------AGCAUGC------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------CCCAAAU----------------------------------- | 1 | novel | ||
| seed | --------------AUGCAAG--------------------------------------------------------------------------------------------------- | 1 | miR-300 | ||
| len | cloning frequencies | ||||
| T1S1 | T3S1 | T5S2 | |||
| -----------------------------------------------------------------------------------------GAAGTCTGGTGATGCTGCC------------ | 19 | - | 2 | - | |
| -----------------------------------------------------------------------------CCCCAAATTCTTGAAGTCTGG---------------------- | 21 | - | 1 | - | |
| ----------TAGCATGCAAGTTTGCCGAG------------------------------------------------------------------------------------------ | 20 | - | - | 1 | |
| -------------CATGCAAGTTTGCCGAGC----------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | gtggctcacaTAGCATGCAAGTTTGCCGAGCttaaagagaagatagatcattgttctggtaagaaactagaagattgCCCCAAATTCTTGAAGTCTGGTGATGCTGCCattgttgacatg | ||||
| ************************************************************************************************************************ | |||||
| rat | (((....(((..(((.(((...((((((..(((...(((((.......((...(((((((.....)))))))...)).......))))).)))..))))))))))))...)))...))). | 0.780 -28.24 | |||
| rat | chromosome:3:2407155:2407274:-1 | intergenic |
sblock7492 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.280 | no | no | 0.42/0.58 | 19/22/0.33 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 10 14 | 8 2 | 5arm 3arm | 123 129 | nd nd | 0.16 0.21 | 1 2 | 3 | 3 | -6 | -5 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------ACGGCAC---------------------------- | 1 | novel | ||
| seed | -----------AUGUUCC-------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------GCACAGU------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| ----------CATGTTCCAGTATGACTCT--------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------AACGGCACAGTCAAGGCTGAGA-------------- | 22 | - | 1 | - | |
| -----------------------------------------------GGCACAGTCAAGGCTGAGA-------------- | 19 | 1 | - | - | |
| rat | acatggtctgCATGTTCCAGTATGACTCTgcccatggcaagttcAACGGCACAGTCAAGGCTGAGAatgggaagcttgtc | ||||
| ******************************************************************************** | |||||
| rat | (((.((.((...(((((((((.(((((.((((..(((.....)))..)))).)))))..)))).)))))...))))))). | 0.960 -22.10 | |||
| rat | chromosome:3:39178358:39178437:-1 | intergenic |
sblock8433 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.332 | no | no | 0.42/0.58 | 19/22/0.33 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 14 16 | 8 2 | 5arm 3arm | 123 129 | nd nd | 0.26 0.32 | 3 3 | 3 | 3 | -6 | -5 |
| reads | miRBase family seed | ||||
| seed | ---------------AUGUUCC---------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------GCACAGU--------------------------- | 1 | novel | ||
| seed | -------------------------------------------------ACGGCAC------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| --------------CATGTTCCAGTATGACTCT----------------------------------------------------- | 19 | - | - | 1 | |
| ---------------------------------------------------GGCACAGTCAAGGCTGAGA---------------- | 19 | 1 | - | - | |
| ------------------------------------------------AACGGCACAGTCAAGGCTGAGA---------------- | 22 | - | 1 | - | |
| rat | gactacatggtctaCATGTTCCAGTATGACTCTacccatggcaagttcAACGGCACAGTCAAGGCTGAGAatgggaaggcttgtca | ||||
| ************************************************************************************** | |||||
| rat | (((.....(((((...(((((((((.(((((...((..(((.....)))..))...)))))..)))).)))))...))))).))). | 0.610 -21.20 | |||
| rat | chromosome:4:85963881:85963966:-1 | intergenic |
sblock923 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.479 | no | no | 0.27/0.37 | 19/22/0.50 | 1.5 0.0 | 2.5 0.0 | 2 2 | 0 0 | 2 1 | 0 0 | 16 4 | 15 31 | 5arm 3arm | 12 13 | nd nd | 0.30 0.21 | 4 2 | 4 | 3 | 15 | 11 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------------------CUUUUCU--------------- | 2 | novel | ||
| seed | --------------------GAUAGAU--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------GAAGAUA------------------------------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S2 | T5S2 | |||
| -------------------------------------------------------------------------------------------TCTTTTCTTCTAGCAACTG---- | 19 | - | - | 2 | |
| ----------------GGAAGATAGATTTATGACCT------------------------------------------------------------------------------ | 20 | 1 | - | - | |
| -------------------AGATAGATTTATGACCTTAGTT------------------------------------------------------------------------- | 22 | - | 1 | - | |
| rat | gcaggtgagaagcttgGGAAGATAGATTTATGACCTTAGTTagggacttggccatatacctatgggaagacactcagcataagaaattacaTCTTTTCTTCTAGCAACTGtgca | ||||
| ****************************************************************************************************************** | |||||
| rat | ((((((.....(((..((((((.((((.((....(((((((.((..(((..(((((....))))).)))...)).))).))))....)).))))..))))))))).))).))). | 0.770 -23.90 | |||
| rat | chromosome:1:203005920:203006033:-1 | intergenic |
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (18 loci)
sblock225 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.869 | no | no | 0.25/0.42 | 18/21/0.44 | 0.0 0.0 1.5 0.0 0.0 | 0.0 0.0 0.5 0.0 1.0 | 1 2 2 1 3 | 0 0 0 0 0 | 1 1 1 1 1 | 0 0 0 0 0 | 4 9 32 16 8 | 15 11 -15 2 8 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 32 32 32 32 32 | nd nd nd nd nd | 0.45 0.37 0.42 0.32 0.43 | 4 4 4 2 4 | 9 | 2 | -3 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------CAAUUGG--------------------- | 3 | novel | |
| seed | ----------UUCAACC--------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------AUUAGAA---------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------CAGACUC--------------------------- | 1 | novel | |
| seed | ------------------------------------AGAAUUG------------------------------------- | 1 | novel | |
| seed | -----AAAAUUU-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------TTTCAACCAGTTTCACGAT---------------------------------------------------- | 19 | - | 2 | |
| ---------------------------------------------------TCAATTGGAGAAGCAAGATGA-------- | 21 | - | 2 | |
| ---------------------------------------------TCAGACTCAATTGGAGAAG---------------- | 19 | - | 1 | |
| ----TAAAATTTCAACCAGTTTCA-------------------------------------------------------- | 20 | 1 | - | |
| -----------------------------------TAGAATTGTCTCAGACTCA-------------------------- | 19 | - | 1 | |
| --------------------------------TATTAGAATTGTCTCAGACTC--------------------------- | 21 | - | 1 | |
| ---------------------------------------------------TCAATTGGAGAAGCAAGA----------- | 18 | - | 1 | |
| rat | gctgTAAAATTTCAACCAGTTTCACGATaagtTATTAGAATTGTCTCAGACTCAATTGGAGAAGCAAGATGAtgttgggg | |||
| ******************************************************************************** | ||||
| rat | .((.(((....(((....(((((.((((.((((...(((....)))..))))..))))..)))))....)))..))).)) | 0.600 -10.40 | ||
| rat | chromosome:1:49951704:49951783:-1 | intergenic |
sblock8614 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.50/0.75 | 18/25/0.57 | 1.3 0.0 2.0 0.0 | 1.0 0.0 0.5 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 14 35 21 0 | 12 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.41 | 5 4 4 3 | 7 | 6 | 0 | 20 |
| reads | miRBase family seed | |||||||
| seed | ---------------CCAGCGA---------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------AACCCCG---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------CUCUGCA------------------------------------ | 1 | novel | |||||
| seed | -------------------CGACCCC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------------GAAGACU---------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------GCAGUGU-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------ | 24 | - | - | - | 2 | - | - | |
| --------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC | 18 | - | - | 1 | - | - | - | |
| ------------------GCGACCCCAGAGGACCCCAGCAC--------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT--------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA---------------------- | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG----------------------------------- | 25 | - | 1 | - | - | - | - | |
| rat | ggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGCACgactctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTC | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | (((((...((((...((((.....(((..((((....(((.((.(((((((((........))))).))..)).)))))...))))..))).....))))..))))..)))))... | 0.870 -36.10 | ||||||
| rat | chromosome:4:150572838:150572953:-1 | intergenic |
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