other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (18 loci)
sblock8680 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.50/0.75 | 18/25/0.57 | 1.3 0.0 2.0 0.0 | 1.0 0.0 0.5 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 14 35 21 0 | 12 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.41 | 5 4 4 3 | 7 | 6 | 0 | 20 |
| reads | miRBase family seed | |||||||
| seed | ---------------CCAGCGA---------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------AACCCCG---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------CUCUGCA------------------------------------ | 1 | novel | |||||
| seed | -------------------CGACCCC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------------GAAGACU---------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------GCAGUGU-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------ | 24 | - | - | - | 2 | - | - | |
| --------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC | 18 | - | - | 1 | - | - | - | |
| ------------------GCGACCCCAGAGGACCCCAGCAC--------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT--------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA---------------------- | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG----------------------------------- | 25 | - | 1 | - | - | - | - | |
| rat | ggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGCACgactctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTC | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | (((((...((((...((((.....(((..((((....(((.((.(((((((((........))))).))..)).)))))...))))..))).....))))..))))..)))))... | 0.870 -36.10 | ||||||
| rat | chromosome:4:150755431:150755546:-1 | intergenic |
sblock8683 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.50/0.75 | 18/25/0.57 | 1.3 0.0 2.0 0.0 | 1.0 0.0 0.5 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 14 35 21 0 | 12 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.41 | 5 4 4 3 | 7 | 6 | 0 | 20 |
| reads | miRBase family seed | |||||||
| seed | ---------------CCAGCGA---------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------AACCCCG---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------CUCUGCA------------------------------------ | 1 | novel | |||||
| seed | -------------------CGACCCC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------------GAAGACU---------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------GCAGUGU-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------ | 24 | - | - | - | 2 | - | - | |
| --------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC | 18 | - | - | 1 | - | - | - | |
| ------------------GCGACCCCAGAGGACCCCAGCAC--------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT--------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA---------------------- | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG----------------------------------- | 25 | - | 1 | - | - | - | - | |
| rat | ggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGCACgactctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTC | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | (((((...((((...((((.....(((..((((....(((.((.(((((((((........))))).))..)).)))))...))))..))).....))))..))))..)))))... | 0.870 -36.10 | ||||||
| rat | chromosome:4:150757606:150757721:-1 | intergenic |
sblock8685 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.348 | no | no | 0.50/0.75 | 18/25/0.57 | 1.3 0.0 2.0 0.0 | 1.0 0.0 0.5 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 14 35 21 0 | 12 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.41 | 5 4 4 3 | 7 | 6 | 0 | 20 |
| reads | miRBase family seed | |||||||
| seed | ---------------CCAGCGA---------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------------------AACCCCG---------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------------CUCUGCA------------------------------------ | 1 | novel | |||||
| seed | -------------------CGACCCC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ---------------------------------------------------------------------------------------------------GAAGACU---------- | 1 | novel | |||||
| seed | -----------------------------------------------------------------------------GCAGUGU-------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------ | 24 | - | - | - | 2 | - | - | |
| --------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC | 18 | - | - | 1 | - | - | - | |
| ------------------GCGACCCCAGAGGACCCCAGCAC--------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT--------------------- | 19 | 1 | - | - | - | - | - | |
| ------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA---------------------- | 22 | - | - | - | - | 1 | - | |
| --------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG----------------------------------- | 25 | - | 1 | - | - | - | - | |
| rat | ggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGCACgactctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTC | |||||||
| ******************************************************************************************************************** | ||||||||
| rat | (((((...((((...((((.....(((..((((....(((.((.(((((((((........))))).))..)).)))))...))))..))).....))))..))))..)))))... | 0.870 -36.10 | ||||||
| rat | chromosome:4:150760929:150761044:-1 | intergenic |
sblock8691 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.286 | no | no | 0.50/0.75 | 18/25/0.57 | 1.3 0.0 2.0 0.0 | 1.0 0.0 0.5 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 17 36 22 1 | 12 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.33 | 5 4 4 2 | 7 | 6 | 0 | 20 |
| reads | miRBase family seed | |||||||
| seed | ------------------CCAGCGA----------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------------------------------------------AACCCCG----------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------CGACCCC------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------------------------------------GCAGUGU--------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------------------------------------------------------GAAGACU----------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------------CUCUGCA------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | T5S2 | |||
| -----------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------- | 24 | - | - | - | 2 | - | - | |
| -----------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG------------------------------------ | 25 | - | 1 | - | - | - | - | |
| -----------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC- | 18 | - | - | 1 | - | - | - | |
| -------------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT---------------------- | 19 | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA----------------------- | 22 | - | - | - | - | 1 | - | |
| ---------------------GCGACCCCAGAGGACCCCAGCAC---------------------------------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| rat | gaaggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGCACgactctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTCt | |||||||
| ************************************************************************************************************************ | ||||||||
| rat | ((.(((((...((((...((((.....(((..((((....(((.((.(((((((((........))))).))..)).)))))...))))..))).....))))..))))..))))).)). | 0.880 -37.80 | ||||||
| rat | chromosome:4:150765271:150765390:-1 | intergenic |
sblock8692 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.202 | no | no | 0.50/0.75 | 18/25/0.50 | 0.0 0.0 2.0 0.0 | 0.0 0.0 0.5 0.0 | 2 1 2 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 14 35 21 0 | 15 -5 11 37 | 5arm 3arm_loop 3arm 3arm | 28 30 31 31 | nd nd nd nd | 0.46 0.44 0.45 0.41 | 5 4 4 3 | 6 | 5 | 0 | 20 |
| reads | miRBase family seed | ||||||
| seed | ---------------CCAGCGA---------------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------AACCCCG---------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------------------------CUCUGCA------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------------------------------------------------------------------------GAAGACU---------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------------------GCAGUGU-------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | |||
| --------------GCCAGCGACCCCAGAGGACCCCAG------------------------------------------------------------------------------ | 24 | - | - | - | 2 | - | |
| --------------------------------------------------------------------------------------------------GGAAGACTTTGTACCCTC | 18 | - | - | 1 | - | - | |
| ----------------------------------------------------------------------------TGCAGTGTCCCGTGGACAT--------------------- | 19 | 1 | - | - | - | - | |
| ------------------------------------------------------------------------ACTCTGCAGTGTCCCGTGGACA---------------------- | 22 | - | - | - | - | 1 | |
| --------------------------------------------------------CAACCCCGAACGATGGACTCTGCAG----------------------------------- | 25 | - | 1 | - | - | - | |
| rat | ggtgctgcagtcctGCCAGCGACCCCAGAGGACCCCAGcatgaccctcttcggtgtCAACCCCGAACGATGGACTCTGCAGTGTCCCGTGGACATtctGGAAGACTTTGTACCCTC | ||||||
| ******************************************************************************************************************** | |||||||
| rat | (((((...((((...((((.....(((..((((....(((.((((.(((((((........))))).)).))..)))))...))))..))).....))))..))))..)))))... | 0.890 -37.60 | |||||
| rat | chromosome:4:150777023:150777138:-1 | intergenic |
sblock10659 [novel_lenNOK_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.367 | no | no | 0.23/0.47 | 19/25/0.67 | 3.5 0.0 0.0 0.0 | 3.5 0.0 0.0 0.0 | 4 1 3 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 19 35 11 1 | -4 -10 21 34 | 5arm_loop 5arm_loop 3arm 3arm | 10 11 11 11 | nd nd nd nd | 0.32 0.63 0.68 0.58 | 3 11 7 5 | 9 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | --------------------------------------------------------------------------------------ACAUAUU------------------------- | 3 | novel | ||
| seed | ---------------------------------------------------------------------------------------------------ACAUUUC------------ | 1 | novel | ||
| seed | ---------------------CUUGACA------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------CAUGAUU--------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------ACUUGAC------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------GACAUGA--------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------GAAACUC---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------------------------------------------------------------------------------TACATATTAACTTCACATTTCA----------- | 22 | 1 | - | 2 | |
| -------------------TACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 22 | - | - | 1 | |
| --------------------------------------------------------------------------------------------------CACATTTCATTACCTGGGA- | 19 | - | - | 1 | |
| -----------------------TGACATGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 25 | - | - | 1 | |
| ----------------------------TGAAACTCCATGATTCAAAG---------------------------------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------------CCATGATTCAAAGCCTGTC---------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------ACTTGACATGAAACTCCATGA----------------------------------------------------------------------------- | 21 | - | 1 | - | |
| rat | ttttttgggggattctagtTACTTGACATGAAACTCCATGATTCAAAGCCTGTCcataatgttagaatctggagaagtcacagtcTACATATTAACTTCACATTTCATTACCTGGGAa | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((..((.((....(((((...(((.(((..(((((.(((((....................))))))))))...)))..))).......))))).......))....))..)))) | 0.880 -21.95 | |||
| rat | chromosome:7:17808368:17808485:-1 | intergenic |
novel_lenNOK_multiarm_DicerOK_loopOverlap (18 loci)
block233178 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.693 | no | no | 0.65/0.74 | 18/20/0.14 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 1 3 1 1 1 | 0 0 0 0 0 | 1 3 1 1 1 | 0 0 0 0 0 | 15 22 25 17 12 | -2 -8 -12 -8 -1 | 5arm_loop 5arm_loop_3arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.47 0.50 0.53 0.50 0.28 | 4 8 8 7 2 | 7 | 5 | 1 | 3 |
| reads | miRBase family seed | ||||||
| seed | -----------------------GGCCCGA--------------------------------------- | 3 | novel | ||||
| seed | ----------------AGGAGGA---------------------------------------------- | 1 | novel | ||||
| seed | --------------------------CCGAGAG------------------------------------ | 1 | novel | ||||
| seed | ---------------------------------CGACAUG----------------------------- | 1 | novel | ||||
| seed | ----------------------------------------UCCCGGG---------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T4S2 | T5S1 | |||
| ----------------------AGGCCCGAGAGCGACATG----------------------------- | 18 | - | 1 | 1 | - | 1 | |
| --------------------------------GCGACATGTCCCGGGTTGCT----------------- | 20 | - | - | - | 1 | - | |
| -------------------------CCCGAGAGCGACATGTCCC------------------------- | 19 | 1 | - | - | - | - | |
| ---------------GAGGAGGAGGCCCGAGAGC----------------------------------- | 19 | 1 | - | - | - | - | |
| ---------------------------------------GTCCCGGGTTGCTGAGGC------------ | 18 | 1 | - | - | - | - | |
| rat | gcggcacccgaggctGAGGAGGAGGCCCGAGAGCGACATGTCCCGGGTTGCTGAGGCagaacggtccgt | ||||||
| ********************************************************************* | |||||||
| .........................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000038395 ENSRNOG00000021725 RGD1307736 | ||||||
| rat | ((((.(((....(((..((....((((((.((........)).)))))).))..))).....))))))) | 0.980 -23.80 | |||||
| rat | chromosome:12:42729850:42729918:1 | Same_strand|Boundary_non-coding|ENSRNOT00000038395|ENSRNOG00000021725 ## ENSRNOG00000021725|protein_coding|RGD1307736|Uncharacterized protein KIAA0152 homolog precursor. [Source:UniProtKB/Swiss-Prot;Acc:Q5FVQ4] ## {SimpF: oe = 0.75 1 CpG} |
sblock11281 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.129 | no | no | 0.53/0.70 | 18/23/0.25 | 0.2 0.0 0.0 0.0 | 0.5 0.0 2.0 0.0 | 4 1 2 1 | 0 0 0 0 | 2 1 2 1 | 0 0 0 0 | 14 29 34 15 | 11 -3 -12 20 | 5arm 5arm_loop 5arm_loop_3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.16 0.26 0.53 0.25 | 2 4 9 3 | 8 | 5 | 2 | 3 |
| reads | miRBase family seed | ||||||
| seed | ----------------UGCUCUG----------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------------------------------AGUCUCG---------------------------------------------------------------------- | 2 | novel | ||||
| seed | ------------------------------CUGGAAG--------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------------------------------------------------CGCUCUC--------------------------- | 1 | novel | ||||
| seed | ---------------GUGCUCU------------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T5S1 | |||
| ---------------GTGCTCTGTGGGATACTGG------------------------------------------------------------------------------ | 19 | 2 | - | - | - | - | |
| -----------------------------------------------------------------------------CCGCTCTCGCAGACACGGTC--------------- | 20 | - | - | - | - | 1 | |
| --------------AGTGCTCTGTGGGATACTG------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| ----------------------------------AAGTCTCGAGCGTCTCCTCCCCG------------------------------------------------------- | 23 | - | - | 1 | - | - | |
| ---------------GTGCTCTGTGGGATACTG------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | |
| -----------------------------ACTGGAAGTCTCGAGCGTC---------------------------------------------------------------- | 19 | - | 1 | - | - | - | |
| ----------------------------------AAGTCTCGAGCGTCTCCTC----------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| rat | gccgggctcgccccAGTGCTCTGTGGGATACTGGAAGTCTCGAGCGTCTCCTCCCCGgctcgcgactccgctccggcCCGCTCTCGCAGACACGGTCgcacaccccccggcg | ||||||
| **************************************************************************************************************** | |||||||
| rat | ((((((...((.((.(((.(((((((((..(((((((((.(((((............))))).))))....))))).....))))))))))))))..))......)))))). | 0.890 -48.20 | |||||
| rat | chromosome:7:46876460:46876571:1 | intergenic ## {SimpF: 1 Eponine,oe = 0.92 1 CpG} |
sblock11505 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.473 | no | no | 0.63/0.82 | 19/23/0.67 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 8 54 6 | 29 -16 30 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.30 0.55 0.26 | 6 5 2 | 3 | 3 | 2 | 2 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------GGACGCG-------------------------------------------------------- | 1 | novel | ||
| seed | ---------UCAUCCC------------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------------------GGGGGUG----------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S2 | T5S1 | |||
| --------CTCATCCCAGACCGGGGAGCGTC--------------------------------------------------------------------------------------- | 23 | 1 | - | - | |
| ------------------------------------------------------GGGACGCGGCGGCTGCAGGGAG------------------------------------------ | 22 | - | - | 1 | |
| ---------------------------------------------------------------------------------------------TGGGGGTGTTGGGTGAGGT------ | 19 | - | 1 | - | |
| rat | cttctttcCTCATCCCAGACCGGGGAGCGTCcggaacgcagagcccggaactggGGGACGCGGCGGCTGCAGGGAGcccgggctaggtgaggaTGGGGGTGTTGGGTGAGGTgggtgg | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((..(((((.((((((((......(((((....(((..(((((((..(((.((..((...)).)).))).....)))))))..))).)))))..))).))))))))))..)).)) | 0.610 -47.90 | |||
| rat | chromosome:7:137898663:137898780:1 | intergenic ## {Repeats: G-rich 12 31 1 class=Low_complexity,G-rich 5 115 1 class=Low_complexity,dust 137898815 137898834 0 class=dust} ## {SimpF: oe = 1.09 1 CpG} |
sblock12179 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.182 | no | no | 0.55/0.68 | 18/21/0.40 | 0.7 0.0 0.0 | 0.7 0.0 0.0 | 3 1 1 | 0 0 0 | 3 1 1 | 0 0 0 | 49 67 30 | -2 -18 -1 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.39 0.37 0.26 | 3 4 2 | 5 | 4 | 1 | 3 |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------AGUCAAG-------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------------------------UGGACUG--------------------------------------------- | 1 | novel | |||
| seed | ------------------------------------------------------------------------CUGCUCG----------------------------------------- | 1 | novel | |||
| seed | --------------------------------------------------GAGUCAA--------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S2 | T3S2 | T5S1 | T5S2 | |||
| --------------------------------------------------GAGTCAAGATGGAGGGAG---------------------------------------------------- | 18 | - | 1 | - | - | |
| -------------------------------------------------GGAGTCAAGATGGAGGGAGTG-------------------------------------------------- | 21 | - | - | 1 | - | |
| -------------------------------------------------------------------GTGGACTGCTCGGTGGCTC---------------------------------- | 19 | 1 | - | - | - | |
| --------------------------------------------------GAGTCAAGATGGAGGGAGTG-------------------------------------------------- | 20 | - | - | - | 1 | |
| -----------------------------------------------------------------------ACTGCTCGGTGGCTCTGGC------------------------------ | 19 | 1 | - | - | - | |
| rat | gaggccttgcggagagcgctcggaggaaaggcggtgggggaggaaggttGGAGTCAAGATGGAGGGAGTGGACTGCTCGGTGGCTCTGGCggacgctgccgccgggtccccgcgggacct | |||||
| ************************************************************************************************************************ | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061506 ENSRNOG00000033159 Rds | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061505 ENSRNOG00000033159 Rds | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061503 ENSRNOG00000033159 Rds | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061502 ENSRNOG00000033159 Rds | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044640 ENSRNOG00000033159 Rds | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000061500 ENSRNOG00000033159 Rds | |||||
| rat | .(((.(((((((.((...(((((......(((((((..........((..((((((...((..((.((....)).)))).))))))..))...))))))).))))))).))))))).))) | 0.700 -46.92 | ||||
| rat | chromosome:9:9296009:9296128:-1 | Same_strand|Intronic_coding|ENSRNOT00000061503|ENSRNOG00000033159 ## ENSRNOG00000033159|protein_coding|Rds|Peripherin-2 (Retinal degeneration slow protein). [Source:UniProtKB/Swiss-Prot;Acc:P17438] |
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