other hairpins
novel_lenNOK_multiarm_DicerOK_loopOverlap (18 loci)
sblock7460 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.68/0.83 | 18/20/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 13 17 12 | -4 -9 -1 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.42 0.50 0.22 | 5 8 2 | 3 | 3 | 3 | 3 |
| reads | miRBase family seed | ||||
| seed | ------------------GGCCUGG---------------------------------------- | 1 | novel | ||
| seed | ------------------------------------CUCACCG---------------------- | 1 | novel | ||
| seed | --------------CUGAGGC-------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T3S2 | |||
| -----------------------------------GCTCACCGGCGCGGGGTC------------ | 18 | - | - | 1 | |
| -----------------AGGCCTGGGAGGACGACTGC---------------------------- | 20 | 1 | - | - | |
| -------------ACTGAGGCCTGGGAGGACG--------------------------------- | 19 | - | 1 | - | |
| rat | cttccggtgcggaACTGAGGCCTGGGAGGACGACTGCTCACCGGCGCGGGGTCtgaaccggtaga | ||||
| ***************************************************************** | |||||
| rat | ((.(((((.((((.(((..(((.(((((........))).))))).)))..)))).))))).)). | 1.000 -28.00 | |||
| rat | chromosome:3:9881760:9881824:-1 | intergenic |
sblock8049 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.404 | no | no | 0.39/0.55 | 18/25/0.38 | 0.0 0.2 0.0 | 0.5 2.0 0.0 | 2 4 2 | 0 0 0 | 1 1 1 | 0 0 0 | 13 44 13 | 23 -13 22 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.10 0.36 0.23 | 1 5 4 | 8 | 1 | 2 | 1 |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------UGUCUAG------------------------------------------------------------------ | 3 | novel |
| seed | ------------------------------------------------------------------------------------GAGACUC--------------------------- | 2 | novel |
| seed | --------------GUUCAGA------------------------------------------------------------------------------------------------- | 2 | novel |
| seed | ----------------------------------------------GUCUAGA----------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------------------------------------TTGTCTAGAGGTAGAGAA-------------------------------------------------------- | 18 | 2 | |
| -----------------------------------------------------------------------------------TGAGACTCCTCTGAGAGCACAG------------- | 22 | 2 | |
| ---------------------------------------------TGTCTAGAGGTAGAGAAC------------------------------------------------------- | 18 | 1 | |
| -------------TGTTCAGAAGGATCATCGGC------------------------------------------------------------------------------------- | 20 | 1 | |
| -------------TGTTCAGAAGGATCATCGG-------------------------------------------------------------------------------------- | 19 | 1 | |
| --------------------------------------------TTGTCTAGAGGTAGAGAACCAGGGA------------------------------------------------- | 25 | 1 | |
| rat | agggaggttgccaTGTTCAGAAGGATCATCGGCtaggcttgcctTTGTCTAGAGGTAGAGAACCAGGGAaggagagcggggatTGAGACTCCTCTGAGAGCACAGggaatccagaccc | ||
| ********************************************************************************************************************** | |||
| rat | .(((.((((.((.(((((((.((((((.((((((..(((..(((((.(((...(((.....)))))))))))..)))..)).)))))).))))))))....))))).))))....))) | 0.960 -35.40 |
| rat | chromosome:3:76966442:76966559:1 | intergenic |
sblock8511 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.219 | no | no | 0.42/0.56 | 18/20/0.62 | 0.9 0.0 | 0.6 0.0 | 7 1 | 0 0 | 2 1 | 0 0 | 19 16 | -5 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.50 0.28 | 4 2 | 8 | 2 | 1 | 3 |
| reads | miRBase family seed | |||
| seed | --------------------UUCAUCC------------------------------------------------ | 5 | novel | |
| seed | -----------------------AUCCCAU--------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------AGCCUUG-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -------------------CTTCATCCCATTTTGGTCGA------------------------------------ | 20 | - | 5 | |
| ----------------------CATCCCATTTTGGTCGAAA---------------------------------- | 19 | 2 | - | |
| -----------------------------------------TAGCCTTGGTGAGTGGCT---------------- | 18 | - | 1 | |
| rat | gctcgtggcactcaactgcCTTCATCCCATTTTGGTCGAAAtagccttggtgagtggcttccctgccgcagggtg | |||
| *************************************************************************** | ||||
| rat | ((((((((((.......(((((((..(((....(((.......))).))))))).))).....)))))).)))). | 0.880 -23.60 | ||
| rat | chromosome:4:119356197:119356271:-1 | intergenic |
sblock9048 [novel_lenNOK_multiarm_DicerOK_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.062 | no | no | 0.57/0.67 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 26 | -1 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.29 0.28 | 2 2 | 2 | 1 | 3 | 1 |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GCCUCAG------------------------------------ | 1 | novel |
| seed | ---------------------AGUCAGC---------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --------------------GAGTCAGCTCTGCAGTCTTCC--------------------------------------------------- | 21 | 1 | |
| ------------------------------------------------AGCCTCAGCGGGCACTGA-------------------------- | 18 | 1 | |
| rat | gcagagagcggcagcccagtGAGTCAGCTCTGCAGTCTTCCtccttgaAGCCTCAGCGGGCACTGAactgggcatccctgggccacttctgc | ||
| ******************************************************************************************** | |||
| ------------------------------------------------------------------------------------------------------ | ENSRNOT00000016776 ENSRNOG00000012439 Bid | ||
| rat | (((((.((.(((.(((((((.(((..((.((((((.((((......)))).))..)))))))))..)))))))........))).))))))) | 0.920 -36.10 |
| rat | chromosome:4:157304955:157305046:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000016776|ENSRNOG00000012439 ## ENSRNOG00000012439|protein_coding|Bid|BH3-interacting domain death agonist (BID) (p22 BID) [Contains: BH3- interacting domain death agonist p15 (p15 BID); BH3-interacting domain death agonist p13 (p13 BID); BH3-interacting domain death agonist p11 (p11 BID)]. [Source:UniProtKB/Swiss-Prot;Acc:Q9JLT6] |
novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH (17 loci)
block346202 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.206 | no | no | 0.50/0.55 | 20/22/1.00 | 1.3 | 2.0 | 3 | 0 | 2 | 0 | 4 | -2 | 3arm_loop | 24 | nd | 0.32 | 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UGCCAGU------------------ | 2 | novel | |
| seed | ----------------------------------AUCAUGC---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| -------------------------------------ATGCCAGTGCAGAAGCAGACTC---- | 22 | - | 2 | |
| ---------------------------------AATCATGCCAGTGCAGAAGC---------- | 20 | 1 | - | |
| rat | cctgggtgcatctctaaaggatgaggttctgaaAATCATGCCAGTGCAGAAGCAGACTCgggc | |||
| *************************************************************** | ||||
| rat | (((((((((.(((.((..((((((...........)))).))..)).))).))..))))))). | 0.610 -17.00 | ||
| rat | chromosome:14:33264209:33264271:-1 | intergenic |
block842827 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.253 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 2 | -7 | 5arm_loop | 20 | nd | 0.36 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CACAAGU---------------------------------------------- | 2 | novel | |
| seed | --------CCACUGU----------------------------------------------------- | 2 | novel | |
| seed | -------------GUCACAA------------------------------------------------ | 1 | novel | |
| seed | ---CCACUCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCCACTGTCACAAGTCTTCCAA--------------------------------------- | 22 | - | 2 | |
| --------------TCACAAGTCTTCCAATTTGA---------------------------------- | 20 | - | 2 | |
| ------------TGTCACAAGTCTTCCAATT------------------------------------- | 19 | - | 1 | |
| --GCCACTCCACTGTCACAAGTCT-------------------------------------------- | 22 | 1 | - | |
| rat | caGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcgactgttgcagcacctccacagttgt | |||
| ******************************************************************** | ||||
| rat | ((((.......((((.((.((((((((........))))...)))))).))))..........)))). | 0.930 -12.23 | ||
| rat | chromosome:1:48997213:48997280:-1 | intergenic |
block846146 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.253 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 2 | -7 | 5arm_loop | 20 | nd | 0.36 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CACAAGU---------------------------------------------- | 2 | novel | |
| seed | --------CCACUGU----------------------------------------------------- | 2 | novel | |
| seed | -------------GUCACAA------------------------------------------------ | 1 | novel | |
| seed | ---CCACUCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCCACTGTCACAAGTCTTCCAA--------------------------------------- | 22 | - | 2 | |
| --------------TCACAAGTCTTCCAATTTGA---------------------------------- | 20 | - | 2 | |
| ------------TGTCACAAGTCTTCCAATT------------------------------------- | 19 | - | 1 | |
| --GCCACTCCACTGTCACAAGTCT-------------------------------------------- | 22 | 1 | - | |
| rat | caGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcgactgttgcagcacctccacagttgt | |||
| ******************************************************************** | ||||
| rat | ((((.......((((.((.((((((((........))))...)))))).))))..........)))). | 0.930 -12.23 | ||
| rat | chromosome:1:50964972:50965039:-1 | intergenic |
block846539 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.542 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 2 | -7 | 5arm_loop | 20 | nd | 0.41 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CACAAGU---------------------------------------------- | 2 | novel | |
| seed | --------CCACUGU----------------------------------------------------- | 2 | novel | |
| seed | -------------GUCACAA------------------------------------------------ | 1 | novel | |
| seed | ---CCACUCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCCACTGTCACAAGTCTTCCAA--------------------------------------- | 22 | - | 2 | |
| --------------TCACAAGTCTTCCAATTTGA---------------------------------- | 20 | - | 2 | |
| ------------TGTCACAAGTCTTCCAATT------------------------------------- | 19 | - | 1 | |
| --GCCACTCCACTGTCACAAGTCT-------------------------------------------- | 22 | 1 | - | |
| rat | caGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcgaatgttgcagcacctccacagttgt | |||
| ******************************************************************** | ||||
| ------------------------------------------------------------------------------ | ENSRNOT00000044862 ENSRNOG00000032704 | |||
| rat | ((((.......((((.(((..((((((........))))...)).))).))))..........)))). | 0.790 -8.63 | ||
| rat | chromosome:1:51348083:51348150:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000044862|ENSRNOG00000032704 ## ENSRNOG00000032704|protein_coding|| |
block847520 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.106 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 2 | -7 | 5arm_loop | 20 | nd | 0.32 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CACAAGU---------------------------------------------- | 2 | novel | |
| seed | --------CCACUGU----------------------------------------------------- | 2 | novel | |
| seed | -------------GUCACAA------------------------------------------------ | 1 | novel | |
| seed | ---CCACUCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCCACTGTCACAAGTCTTCCAA--------------------------------------- | 22 | - | 2 | |
| --------------TCACAAGTCTTCCAATTTGA---------------------------------- | 20 | - | 2 | |
| ------------TGTCACAAGTCTTCCAATT------------------------------------- | 19 | - | 1 | |
| --GCCACTCCACTGTCACAAGTCT-------------------------------------------- | 22 | 1 | - | |
| rat | caGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcgactgttgcagtacctccacagttgt | |||
| ******************************************************************** | ||||
| rat | ((((......(((((.((.((((((((........))))...)))))).))))).........)))). | 0.960 -13.86 | ||
| rat | chromosome:1:52387009:52387076:-1 | intergenic |
block961755 [novel_Multihit_shortStem_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.253 | no | no | 0.35/0.55 | 19/22/0.83 | 4.0 | 2.8 | 6 | 0 | 2 | 0 | 2 | -7 | 5arm_loop | 20 | nd | 0.36 | 3 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------CACAAGU---------------------------------------------- | 2 | novel | |
| seed | --------CCACUGU----------------------------------------------------- | 2 | novel | |
| seed | -------------GUCACAA------------------------------------------------ | 1 | novel | |
| seed | ---CCACUCC---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------TCCACTGTCACAAGTCTTCCAA--------------------------------------- | 22 | - | 2 | |
| --------------TCACAAGTCTTCCAATTTGA---------------------------------- | 20 | - | 2 | |
| ------------TGTCACAAGTCTTCCAATT------------------------------------- | 19 | - | 1 | |
| --GCCACTCCACTGTCACAAGTCT-------------------------------------------- | 22 | 1 | - | |
| rat | caGCCACTCCACTGTCACAAGTCTTCCAATTTGAaggaactcgactgttgcagcacctccacagttgt | |||
| ******************************************************************** | ||||
| rat | ((((.......((((.((.((((((((........))))...)))))).))))..........)))). | 0.930 -12.23 | ||
| rat | chromosome:1:51031854:51031921:1 | intergenic |
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