other hairpins
novel_lenNOK_Multihit_5varHIGH_bulgeHIGH (17 loci)
block964465 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.404 | no | no | 0.50/0.53 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 1 | 0 | 9 | 14 | 3arm | 22 | nd | 0.26 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------CUCUGGU---------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------UGGUUUG------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------------------------GCTCTGGTTTGTCTTGGGT----------- | 19 | 1 | |
| ----------------------------------------------------------------------------------CTGGTTTGTCTTGGGTAC--------- | 18 | 1 | |
| rat | tttggaccatcataagtataacacaggaagagttcaggggcatcaaaactgttagtactgtaatacaggttcagcatttGCTCTGGTTTGTCTTGGGTACtaaggccaa | ||
| ************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||
| rat | .((((.((......(((((....(((((.....(((.(((((......(((......(((.....)))...)))....))))))))....))))).)))))..)))))) | 0.950 -23.90 |
| rat | chromosome:1:52239373:52239481:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
block964969 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.50/0.53 | 18/19/0.00 | 1.5 | 1.0 | 2 | 0 | 1 | 0 | 9 | 14 | 3arm | 22 | nd | 0.26 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------CUCUGGU---------------------- | 1 | novel |
| seed | -----------------------------------------------------------------------------------UGGUUUG------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------------------------GCTCTGGTTTGTCTTGGGT----------- | 19 | 1 | |
| ----------------------------------------------------------------------------------CTGGTTTGTCTTGGGTAC--------- | 18 | 1 | |
| rat | tttggaccatcataagtataacacaggaagagttcaggggcatcaaaagtgttagcactgtagtacaggttcagcatttGCTCTGGTTTGTCTTGGGTACtaaggccaa | ||
| ************************************************************************************************************* | |||
| ----------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | ||
| rat | .((((.((......(((((....(((((.....(((.(((((.....(((((((((.(((.....)))))).))))))))))))))....))))).)))))..)))))) | 0.990 -27.60 |
| rat | chromosome:1:52653571:52653679:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
block1517490 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.601 | no | no | 0.35/0.47 | 19/20/0.33 | 1.7 | 1.0 | 3 | 0 | 3 | 0 | 10 | 6 | 5arm | 73 | nd | 0.26 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------ACAGAUA------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------AUGACAG--------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------AAUGACA---------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T4S2 | T5S1 | |||
| -----------AATGACAGATATGACGAGA---------------------------------------------------------- | 19 | 1 | - | - | |
| --------------GACAGATATGACGAGATCC------------------------------------------------------- | 19 | - | 1 | - | |
| ----------TAATGACAGATATGACGAGA---------------------------------------------------------- | 20 | - | - | 1 | |
| rat | ggaccaattaTAATGACAGATATGACGAGATCCaccgccactggggaggcaacgttcctgggtcctaagtctgtggttggcattgcca | ||||
| **************************************************************************************** | |||||
| rat | ((..((((..((((.((((((.((....((((((((.((.....)).)).........)))))).)).)))))).))))..)))))). | 0.420 -20.90 | |||
| rat | chromosome:3:170856167:170856254:1 | intergenic |
block2090575 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.45/0.52 | 21/25/0.67 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 4 10 | 11 1 | 5arm 5arm | 11 12 | nd nd | 0.33 0.28 | 4 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CCUCUUG-------------------------------------------------------------------- | 1 | novel | |
| seed | -----------GGGACAG-------------------------------------------------------------- | 1 | novel | |
| seed | --------------ACAGUGU----------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----TCCTCTTGGGACAGTGTAGAG------------------------------------------------------- | 21 | - | 1 | |
| -------------GACAGTGTAGAGCAATGGAAAG--------------------------------------------- | 22 | 1 | - | |
| ----------TGGGACAGTGTAGAGCAATGGAAAG--------------------------------------------- | 25 | - | 1 | |
| rat | ctccTCCTCTTGGGACAGTGTAGAGCAATGGAAAGcatgggagctcttcttgccctcctgtgtcctgacagagtcagggc | |||
| ******************************************************************************** | ||||
| rat | .((((.((((.((((((....((.((((.(((.(((......))).))))))).))....))))))...))))..)))). | 0.690 -24.40 | ||
| rat | chromosome:7:18783116:18783195:-1 | intergenic |
block2091605 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.308 | no | no | 0.45/0.52 | 21/25/0.67 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 2 8 | 11 1 | 5arm 5arm | 11 12 | nd nd | 0.29 0.28 | 4 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CCUCUUG------------------------------------------------------------------ | 1 | novel | |
| seed | ---------GGGACAG------------------------------------------------------------ | 1 | novel | |
| seed | ------------ACAGUGU--------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------GACAGTGTAGAGCAATGGAAAG------------------------------------------- | 22 | 1 | - | |
| --TCCTCTTGGGACAGTGTAGAG----------------------------------------------------- | 21 | - | 1 | |
| --------TGGGACAGTGTAGAGCAATGGAAAG------------------------------------------- | 25 | - | 1 | |
| rat | ccTCCTCTTGGGACAGTGTAGAGCAATGGAAAGcatgggagcacttcttgcccactgtgtcctgacagagtcaggg | |||
| **************************************************************************** | ||||
| rat | (((.((((.(((((((((....((((.(((..((......))..))))))).)))))).)))....))))..))). | 0.600 -22.10 | ||
| rat | chromosome:7:19367877:19367952:-1 | intergenic |
block2189905 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.246 | no | no | 0.45/0.52 | 21/25/0.67 | 0.0 1.5 | 0.0 0.0 | 1 2 | 0 0 | 1 2 | 0 0 | 4 10 | 11 1 | 5arm 5arm | 11 12 | nd nd | 0.33 0.28 | 4 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----CCUCUUG-------------------------------------------------------------------- | 1 | novel | |
| seed | -----------GGGACAG-------------------------------------------------------------- | 1 | novel | |
| seed | --------------ACAGUGU----------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------GACAGTGTAGAGCAATGGAAAG--------------------------------------------- | 22 | 1 | - | |
| ----TCCTCTTGGGACAGTGTAGAG------------------------------------------------------- | 21 | - | 1 | |
| ----------TGGGACAGTGTAGAGCAATGGAAAG--------------------------------------------- | 25 | - | 1 | |
| rat | ctccTCCTCTTGGGACAGTGTAGAGCAATGGAAAGcatgggagctcttcttgccctcctgtgtcctgacagagtcagggc | |||
| ******************************************************************************** | ||||
| rat | .((((.((((.((((((....((.((((.(((.(((......))).))))))).))....))))))...))))..)))). | 0.690 -24.40 | ||
| rat | chromosome:7:18369366:18369445:1 | intergenic |
block2454654 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.42/0.47 | 19/23/0.33 | 2.3 | 3.7 | 3 | 0 | 3 | 0 | 16 | 8 | 5arm | 136 | nd | 0.26 | 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------CAUCCAU---------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------GACAACU--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S1 | T3S2 | |||
| -----------------------TGACAACTTTGGCATCGTG---------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------TCATCCATGACAACTTTGGCATC------------------------------------------------------------------------------- | 23 | 1 | - | - | |
| ----------------TCATCCATGACAACTTTGG----------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| rat | cccaccccggccaaggTCATCCATGACAACTTTGGCATCGTGgaagggctacatgactacagtccatgccatcactgccactcagtagactgtggatggcccctctggaaagctgtgg | ||||
| ********************************************************************************************************************** | |||||
| rat | .((((.....(((.((((((((((....(((.(((((..((((..(((((..........)))))...))))...)))))...))).....))))))))))....)))......)))) | 0.600 -38.90 | |||
| rat | chromosome:8:116982535:116982652:1 | intergenic |
block2575642 [novel_lenNOK_Multihit_5varHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.47/0.63 | 19/21/0.60 | 0.0 1.2 | 0.0 1.5 | 1 4 | 0 0 | 1 4 | 0 0 | 13 5 | 5 10 | 3arm 3arm | 22 22 | nd nd | 0.42 0.29 | 5 4 | 5 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------GUCUCUC------------------ | 2 | novel | ||||
| seed | --------------------------------------------------UUACAAG------------------------ | 1 | novel | ||||
| seed | ----------------------------------------------------------CUCUCCA---------------- | 1 | novel | ||||
| seed | -------------------------------------------------------AGUCUCU------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T2S2 | T4S1 | T5S1 | |||
| -------------------------------------------------------AGTCTCTCCAGTCGCAGCCTC----- | 21 | 1 | - | - | 1 | - | |
| ------------------------------------------------------AAGTCTCTCCAGTCGCAGCC------- | 20 | - | 1 | - | - | - | |
| -------------------------------------------------CTTACAAGTCTCTCCAGTC------------- | 19 | - | - | - | - | 1 | |
| ---------------------------------------------------------TCTCTCCAGTCGCAGCCTC----- | 19 | - | - | 1 | - | - | |
| rat | tttggaaggaacagaccgggggactcccattttattagcttgcagccgtCTTACAAGTCTCTCCAGTCGCAGCCTCcggga | ||||||
| ********************************************************************************* | |||||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000018552 ENSRNOG00000013781 Kcnq5 | ||||||
| ------------------------------------------------------------------------------------------- | ENSRNOT00000040034 ENSRNOG00000013781 Kcnq5 | ||||||
| rat | (((((.(((....(((.((((((((............((.....)).........)))))).)).)))....)))))))). | 0.730 -21.20 | |||||
| rat | chromosome:9:20293152:20293232:1 | Opposite_strand|Intronic_coding|ENSRNOT00000018552|ENSRNOG00000013781 ## ENSRNOG00000013781|protein_coding|Kcnq5|Potassium voltage-gated channel KQT-like subfamily member 5 (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q8K3W7] |
novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH (17 loci)
block749183 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.403 | no | no | 0.47/0.61 | 18/21/0.21 | 1.3 0.2 0.5 0.0 | 1.2 0.5 1.0 0.0 | 6 4 2 2 | 0 0 0 0 | 2 2 2 1 | 0 0 0 0 | 18 13 5 2 | 22 30 38 43 | 3arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.56 0.39 0.47 0.44 | 4 4 5 5 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------GAAGCAG----------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------------------------------------AGAGUAG------------------------ | 3 | novel | |||
| seed | ----------------------------------------------------------------------------------AAGAAGC------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------------------------------------AAGCCUA------------ | 2 | novel | |||
| seed | ------------------------------------------------------------------------------------------------ACCUCAA----------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------------CAGAGUA------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------------CCUCAAG---------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------UGAAGAA--------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T4S1 | |||
| -----------------------------------------------------------------------------------AGAAGCAGAGTAGACCTC------------------- | 18 | - | 1 | 2 | - | |
| ---------------------------------------------------------------------------------GAAGAAGCAGAGTAGACCTCA------------------ | 21 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------CAGAGTAGACCTCAAGCC-------------- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------------------CAAGCCTAGAGCACACCG-- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------CAGAGTAGACCTCAAGCCT------------- | 19 | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------GCAGAGTAGACCTCAAGCCT------------- | 20 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------ACCTCAAGCCTAGAGCACA----- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------------GACCTCAAGCCTAGAGCA------- | 18 | - | - | - | 1 | |
| -------------------------------------------------------------------------------CTGAAGAAGCAGAGTAGAC---------------------- | 19 | - | 1 | - | - | |
| rat | cctgtgattggctagcacactctgaaggggagacaaaagccagaagagtgtaggagccctgcccaacttccttttttctCTGAAGAAGCAGAGTAGACCTCAAGCCTAGAGCACACCGga | |||||
| ************************************************************************************************************************ | ||||||
| rat | ((((((...((((((...((((((....(((((.(((((...((((...(((((...)))))....))))))))).))))).......))))))....))..)))).....))))..)). | 0.640 -31.70 | ||||
| rat | chromosome:18:56169337:56169456:1 | intergenic |
block749237 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.403 | no | no | 0.47/0.61 | 18/21/0.21 | 1.3 0.2 0.5 0.0 | 1.2 0.5 1.0 0.0 | 6 4 2 2 | 0 0 0 0 | 2 2 2 1 | 0 0 0 0 | 18 13 5 2 | 22 30 38 43 | 3arm 3arm 3arm 3arm | 2 2 2 2 | nd nd nd nd | 0.56 0.39 0.47 0.44 | 4 4 5 5 | 14 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------GAAGCAG----------------------------- | 3 | novel | |||
| seed | -----------------------------------------------------------------------------------------AGAGUAG------------------------ | 3 | novel | |||
| seed | ----------------------------------------------------------------------------------AAGAAGC------------------------------- | 2 | novel | |||
| seed | -----------------------------------------------------------------------------------------------------AAGCCUA------------ | 2 | novel | |||
| seed | ------------------------------------------------------------------------------------------------ACCUCAA----------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------------CAGAGUA------------------------- | 1 | novel | |||
| seed | -------------------------------------------------------------------------------------------------CCUCAAG---------------- | 1 | novel | |||
| seed | --------------------------------------------------------------------------------UGAAGAA--------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T3S1 | T3S2 | T4S1 | |||
| -----------------------------------------------------------------------------------AGAAGCAGAGTAGACCTC------------------- | 18 | - | 1 | 2 | - | |
| ---------------------------------------------------------------------------------GAAGAAGCAGAGTAGACCTCA------------------ | 21 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------CAGAGTAGACCTCAAGCC-------------- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------------------CAAGCCTAGAGCACACCG-- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------------------------------CAGAGTAGACCTCAAGCCT------------- | 19 | 1 | - | - | - | |
| ---------------------------------------------------------------------------------------GCAGAGTAGACCTCAAGCCT------------- | 20 | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------------ACCTCAAGCCTAGAGCACA----- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------------------------------------------GACCTCAAGCCTAGAGCA------- | 18 | - | - | - | 1 | |
| -------------------------------------------------------------------------------CTGAAGAAGCAGAGTAGAC---------------------- | 19 | - | 1 | - | - | |
| rat | cctgtgattggctagcacactctgaaggggagacaaaagccagaagagtgtaggagccctgcccaacttccttttttctCTGAAGAAGCAGAGTAGACCTCAAGCCTAGAGCACACCGga | |||||
| ************************************************************************************************************************ | ||||||
| ......................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000050063 ENSRNOG00000019542 MGC108823 | |||||
| rat | ((((((...((((((...((((((....(((((.(((((...((((...(((((...)))))....))))))))).))))).......))))))....))..)))).....))))..)). | 0.640 -31.70 | ||||
| rat | chromosome:18:56250583:56250702:1 | Same_strand|Boundary_non-coding|ENSRNOT00000050063|ENSRNOG00000019542 ## ENSRNOG00000019542|protein_coding|MGC108823|similar to interferon-inducible GTPase (MGC108823), mRNA [Source:RefSeq_dna;Acc:NM_001012353] |
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