other hairpins
novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH (17 loci)
block1316740 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.337 | no | no | 0.44/0.53 | 18/21/0.14 | 1.9 0.7 | 2.9 1.3 | 8 6 | 0 0 | 2 3 | 0 0 | 13 7 | 20 28 | 3arm 3arm | 2 2 | nd nd | 0.44 0.50 | 4 8 | 14 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------AAGGCAC-------------------- | 3 | miR-124 | ||
| seed | --------------------------------------------------------------------------AGGGAGU---------------------------- | 3 | novel | ||
| seed | -----------------------------------------------------------------------------------AGGCACA------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------------GGAGUGA-------------------------- | 2 | novel | ||
| seed | -------------------------------------------------------------------------------GUGAAGG----------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------------------GGGAGUG--------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------GGCACAU------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T3S1 | |||
| ------------------------------------------------------------------------------AGTGAAGGCACATATCGA------------- | 18 | - | 1 | 1 | |
| ----------------------------------------------------------------------------------AAGGCACATATCGAGGTTG-------- | 19 | 1 | 1 | - | |
| ---------------------------------------------------------------------------------GAAGGCACATATCGAGGT---------- | 18 | - | - | 2 | |
| -------------------------------------------------------------------------AAGGGAGTGAAGGCACATA----------------- | 19 | - | 1 | 1 | |
| --------------------------------------------------------------------------AGGGAGTGAAGGCACATATC--------------- | 20 | - | 1 | - | |
| ---------------------------------------------------------------------------------GAAGGCACATATCGAGGTT--------- | 19 | - | 1 | - | |
| ---------------------------------------------------------------------------GGGAGTGAAGGCACATATC--------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------------------AAGGGAGTGAAGGCACAT------------------ | 18 | - | 1 | - | |
| -----------------------------------------------------------------------------------AGGCACATATCGAGGTTGT------- | 19 | - | - | 1 | |
| ---------------------------------------------------------------------------GGGAGTGAAGGCACATATCGA------------- | 21 | - | - | 1 | |
| rat | agagtttctaagctgtcttgcctgttgtcacctttgtcgctcagcagtcttatgactgggagagccggggaaaAAGGGAGTGAAGGCACATATCGAGGTTGTgaatctc | ||||
| ************************************************************************************************************* | |||||
| rat | .(((.(((..((((....(((((....((.(((((.((((((..(((((....)))))...))))....)).)))))))....)))))........))))..))).))) | 0.870 -30.60 | |||
| rat | chromosome:2:191186964:191187072:1 | intergenic |
block1061225 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.44/0.47 | 19/25/0.50 | 1.6 | 0.0 | 11 | 0 | 2 | 0 | 23 | 9 | 3arm | 1 | nd | 0.47 | 4 | 12 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------CAUAGAA------------------------------------- | 6 | novel | |
| seed | --------------------------------------------------------------AGAACUC---------------------------------- | 5 | novel | |
| seed | -----------------------------------------------------------------ACUCGCU------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ----------------------------------------------------------TCATAGAACTCGCTGGAAGTGA----------------------- | 22 | 2 | 4 | |
| -------------------------------------------------------------TAGAACTCGCTGGAAGTGA----------------------- | 19 | - | 5 | |
| ----------------------------------------------------------------AACTCGCTGGAAGTGATTTCCATCT-------------- | 25 | - | 1 | |
| rat | cagagtctggtaggagggagtggcgacaggagaggaggcaaactaaccaagagtgctcTCATAGAACTCGCTGGAAGTGAtttccatctgtcacccatctctg | |||
| ******************************************************************************************************* | ||||
| rat | (((((...(((.(((((((((.((..((((((..((((((..((.....))..))).)))......))).)))...)).)))))).)))...)))...))))) | 0.950 -34.20 | ||
| rat | chromosome:20:5532172:5532274:-1 | intergenic |
block1094090 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.37/0.48 | 19/25/0.12 | 3.2 | 3.2 | 18 | 0 | 3 | 0 | 11 | 7 | 3arm | 1 | nd | 0.32 | 5 | 26 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------CCAGAUA------------------------------ | 6 | novel | ||
| seed | ------------------------------------------------------UCCAGAU------------------------------- | 6 | novel | ||
| seed | -------------------------------------------------------------AUGAGGU------------------------ | 6 | novel | ||
| seed | ---------------------------------------------------------------GAGGUUU---------------------- | 4 | novel | ||
| seed | ---------------------------------------------------------AGAUAUG---------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------UUUCCAG--------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------CAGUUUC------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------------------------------TTCCAGATATGAGGTTTCA-------------------- | 19 | - | - | 6 | |
| ------------------------------------------------------TCCAGATATGAGGTTTCAA------------------- | 19 | - | - | 5 | |
| ------------------------------------------------------------TATGAGGTTTCAAAGGTTG------------- | 19 | - | - | 5 | |
| --------------------------------------------------------------TGAGGTTTCAAAGGTTGCT----------- | 19 | - | 1 | 2 | |
| ------------------------------------------------GCAGTTTCCAGATATGAGGT------------------------ | 20 | - | - | 1 | |
| --------------------------------------------------------CAGATATGAGGTTTCAAAG----------------- | 19 | - | - | 1 | |
| --------------------------------------------------------CAGATATGAGGTTTCAAAGGTTGCT----------- | 25 | - | - | 1 | |
| ---------------------------------------------------GTTTCCAGATATGAGGTTTCA-------------------- | 21 | 1 | - | - | |
| --------------------------------------------------------------TGAGGTTTCAAAGGTTGCTAGGGGA----- | 25 | - | - | 1 | |
| ------------------------------------------------------TCCAGATATGAGGTTTCAAAG----------------- | 21 | - | - | 1 | |
| ------------------------------------------------------------TATGAGGTTTCAAAGGTTGCTAGGG------- | 25 | - | - | 1 | |
| rat | gcccccactccttgacctcctgcttcttgctctggcaaggtcctgtgggcagtTTCCAGATATGAGGTTTCAAAGGTTGCTaggggaaggca | ||||
| ******************************************************************************************** | |||||
| rat | (((....(((((.(((((...(((((.((.(((((.((.((((...))))..)).))))))).))))).....)))))...)))))..))). | 0.890 -30.70 | |||
| rat | chromosome:20:5559193:5559284:1 | intergenic |
block1470376 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.048 | no | no | 0.36/0.50 | 18/24/0.60 | 1.5 1.5 | 1.0 3.0 | 6 4 | 0 0 | 1 2 | 0 0 | 23 8 | 5 17 | 3arm 3arm | 1 1 | nd nd | 0.50 0.62 | 8 8 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------ACUUAAU------------------------ | 3 | novel | |
| seed | -----------------------------------------------------------------CCCAAAG-------------------------------------- | 3 | novel | |
| seed | -------------------------------------------------------------ACCUCCC------------------------------------------ | 2 | novel | |
| seed | -------------------------------------------------------------------------GAACAUA------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------------CCAAAGU------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------------------------TCCCAAAGTGAACATACTT--------------------------- | 19 | - | 3 | |
| ------------------------------------------------------------------------------TACTTAATGCACTGTCTCGCCACC-------- | 24 | - | 2 | |
| ------------------------------------------------------------------------TGAACATACTTAATGCACTGTCTC-------------- | 24 | - | 1 | |
| ------------------------------------------------------------TACCTCCCAAAGTGAACATAC----------------------------- | 21 | - | 1 | |
| ------------------------------------------------------------------------------TACTTAATGCACTGTCTC-------------- | 18 | 1 | - | |
| -----------------------------------------------------------------CCCAAAGTGAACATACTTAATG----------------------- | 22 | - | 1 | |
| ------------------------------------------------------------TACCTCCCAAAGTGAACATACTT--------------------------- | 23 | - | 1 | |
| rat | ctgcctggtgctccttctgttgtctctgcttgtgctctttggttctaggtgccccgccccTACCTCCCAAAGTGAACATACTTAATGCACTGTCTCGCCACCaaggcaga | |||
| ************************************************************************************************************** | ||||
| rat | ((((((((((........((.((.......(((...((((((...((((.((...)).))))....))))))...)))........))))........))))).))))). | 0.600 -29.75 | ||
| rat | chromosome:3:76977644:76977753:1 | intergenic |
block1696818 [novel_lenNOK_cloningOK_5varHIGH_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.468 | no | no | 0.32/0.38 | 18/22/0.53 | 1.1 | 1.9 | 15 | 0 | 4 | 0 | 32 | 0 | 5arm | 1 | nd | 0.39 | 4 | 15 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------------CCAAAAC----------------------------------------------------------------------- | 10 | novel | |||
| seed | ---------------------------------CCAUCCA--------------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------------AUCCAAA------------------------------------------------------------------------- | 2 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------------------------TCCAAAACTTAGTACATC------------------------------------------------------------- | 18 | - | - | 1 | 2 | |
| ------------------------------------TCCAAAACTTAGTACATCAG----------------------------------------------------------- | 20 | - | - | - | 3 | |
| ----------------------------------CATCCAAAACTTAGTACA--------------------------------------------------------------- | 18 | - | 1 | - | 1 | |
| ------------------------------------TCCAAAACTTAGTACATCAGC---------------------------------------------------------- | 21 | - | - | - | 2 | |
| ------------------------------------TCCAAAACTTAGTACATCA------------------------------------------------------------ | 19 | - | - | - | 2 | |
| --------------------------------TCCATCCAAAACTTAGTACA--------------------------------------------------------------- | 20 | 2 | - | - | - | |
| --------------------------------TCCATCCAAAACTTAGTACATC------------------------------------------------------------- | 22 | - | - | - | 1 | |
| rat | gtgtctgagagcagctgtgagtcctgggacacTCCATCCAAAACTTAGTACATCAGCcatggcccgtgctgagagggagaaagacacccccgtcgctgctgagcatctggaagca | |||||
| ******************************************************************************************************************* | ||||||
| rat | ((.(((.(((.((((.((((.....(((...((...(((....((((((((....((....))..))))))))..)))...))...)))...)))).))))....)))))).)). | 0.620 -34.50 | ||||
| rat | chromosome:4:164291407:164291521:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK (17 loci)
sblock10614 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.35/0.42 | 19/24/0.44 | 0.0 1.0 0.0 | 0.0 1.4 0.0 | 1 9 4 | 0 0 0 | 1 2 3 | 0 0 0 | 5 15 6 | 22 -4 15 | 5arm 3arm 3arm | 13 13 13 | nd nd nd | 0.60 0.20 0.42 | 6 2 4 | 16 | 3 | -5 | 0 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------------------GACAAUU----------------- | 6 | novel | ||
| seed | -------------------------------------------------------GAGUAAC------------------------------- | 5 | novel | ||
| seed | ------------------------------------------------------UGAGUAA-------------------------------- | 3 | novel | ||
| seed | --------------------------------------------------GUAUUGA------------------------------------ | 1 | novel | ||
| seed | ------AUACAGG-------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| --------------------------------------------------------------------TGACAATTCTGACCACTCA------ | 19 | 1 | 1 | 4 | |
| ------------------------------------------------------TGAGTAACTTGAGCTGACAATTCT--------------- | 24 | - | - | 2 | |
| ------------------------------------------------------TGAGTAACTTGAGCTGACA-------------------- | 19 | - | - | 2 | |
| -----------------------------------------------------TTGAGTAACTTGAGCTGACA-------------------- | 20 | - | - | 2 | |
| -----TATACAGGTCTGATTTTCCT-------------------------------------------------------------------- | 20 | - | - | 1 | |
| ------------------------------------------------------TGAGTAACTTGAGCTGACAAT------------------ | 21 | - | 1 | - | |
| -----------------------------------------------------TTGAGTAACTTGAGCTGAC--------------------- | 19 | - | - | 1 | |
| -------------------------------------------------TGTATTGAGTAACTTGAGCTGACA-------------------- | 24 | - | 1 | - | |
| rat | gggaatatacaggtctgattttccttgcctaagtttaagggactcaaaatgtaTTGAGTAACTTGAGCTGACAATTCTGACCACTCAtttcca | ||||
| ********************************************************************************************* | |||||
| rat | ((((((.....((((.((......(((....((((((((..((((((......))))))..))))))))..))).)).))))....)))))). | 0.980 -27.10 | |||
| rat | chromosome:7:17356770:17356862:-1 | intergenic |
sblock1425 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.35/0.46 | 18/25/0.25 | 0.0 0.5 0.0 0.0 | 0.0 0.3 0.0 0.0 | 1 11 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 4 21 27 9 | 1 -12 -23 2 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 21 40 40 40 | nd nd nd nd | 0.25 0.47 0.44 0.22 | 3 6 6 2 | 16 | 2 | 1 | -5 |
| reads | miRBase family seed | |||
| seed | -----------------------UGACUAG---------------------------------- | 7 | novel | |
| seed | ----------------------UUGACUA----------------------------------- | 5 | novel | |
| seed | -----GGCUCUU---------------------------------------------------- | 1 | novel | |
| seed | ----------------------------AGCCUUA----------------------------- | 1 | novel | |
| seed | ---------------------UUUGACU------------------------------------ | 1 | novel | |
| seed | --------------------------------------UCAUAGG------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------TTGACTAGCCTTATGATCA----------------------- | 19 | - | 6 | |
| ---------------------TTTGACTAGCCTTATGATC------------------------ | 19 | - | 3 | |
| ---------------------TTTGACTAGCCTTATGATCA----------------------- | 20 | - | 2 | |
| ----TGGCTCTTTGCTTCCTCTTTGACT------------------------------------ | 24 | 1 | - | |
| -------------------------------------ATCATAGGGAGACACTAG--------- | 18 | - | 1 | |
| --------------------CTTTGACTAGCCTTATGATC------------------------ | 20 | - | 1 | |
| ---------------------------TAGCCTTATGATCATAGGGAGACAC------------ | 25 | - | 1 | |
| ----------------------TTGACTAGCCTTATGATC------------------------ | 18 | - | 1 | |
| rat | ccaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattgga | |||
| **************************************************************** | ||||
| rat | ((((((((.((.((((((((...(((.((......)).))).)))))).))..)))))))))). | 1.000 -24.20 | ||
| rat | chromosome:1:51120717:51120780:1 | intergenic |
sblock1473 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.35/0.46 | 18/24/0.33 | 0.0 0.5 0.0 | 0.0 0.3 0.0 | 1 11 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 21 9 | 1 -12 0 | 5arm 5arm_loop_3arm 3arm | 21 40 40 | nd nd nd | 0.29 0.47 0.30 | 2 6 2 | 15 | 2 | -1 | -5 |
| reads | miRBase family seed | |||
| seed | -----------------------UGACUAG---------------------------------- | 7 | novel | |
| seed | ----------------------UUGACUA----------------------------------- | 5 | novel | |
| seed | -----GGCUCUU---------------------------------------------------- | 1 | novel | |
| seed | ---------------------UUUGACU------------------------------------ | 1 | novel | |
| seed | ------------------------------------GAUCAUA--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------TTGACTAGCCTTATGATCA----------------------- | 19 | - | 6 | |
| ---------------------TTTGACTAGCCTTATGATC------------------------ | 19 | - | 3 | |
| ---------------------TTTGACTAGCCTTATGATCA----------------------- | 20 | - | 2 | |
| ----TGGCTCTTTGCTTCCTCTTTGACT------------------------------------ | 24 | 1 | - | |
| --------------------CTTTGACTAGCCTTATGATC------------------------ | 20 | - | 1 | |
| ----------------------TTGACTAGCCTTATGATC------------------------ | 18 | - | 1 | |
| -----------------------------------TGATCATAGGGATACACTAG--------- | 20 | - | 1 | |
| rat | ccaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggatacactaggccattgga | |||
| **************************************************************** | ||||
| -------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((((((((.((.((..(((.((.(((.((......)).))).)))))..))..)))))))))). | 1.000 -22.70 | ||
| rat | chromosome:1:51538470:51538533:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1511 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.35/0.46 | 18/25/0.25 | 0.0 0.5 0.0 0.0 | 0.0 0.3 0.0 0.0 | 1 11 1 1 | 0 0 0 0 | 1 1 1 1 | 0 0 0 0 | 4 21 27 8 | 1 -12 -23 2 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 21 40 40 40 | nd nd nd nd | 0.25 0.47 0.44 0.22 | 3 6 6 2 | 16 | 2 | 1 | -5 |
| reads | miRBase family seed | |||
| seed | -----------------------UGACUAG--------------------------------- | 7 | novel | |
| seed | ----------------------UUGACUA---------------------------------- | 5 | novel | |
| seed | ---------------------UUUGACU----------------------------------- | 1 | novel | |
| seed | ----------------------------AGCCUUA---------------------------- | 1 | novel | |
| seed | --------------------------------------UCAUAGG------------------ | 1 | novel | |
| seed | -----GGCUCUU--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------TTGACTAGCCTTATGATCA---------------------- | 19 | - | 6 | |
| ---------------------TTTGACTAGCCTTATGATC----------------------- | 19 | - | 3 | |
| ---------------------TTTGACTAGCCTTATGATCA---------------------- | 20 | - | 2 | |
| ----TGGCTCTTTGCTTCCTCTTTGACT----------------------------------- | 24 | 1 | - | |
| ---------------------------TAGCCTTATGATCATAGGGAGACAC----------- | 25 | - | 1 | |
| ----------------------TTGACTAGCCTTATGATC----------------------- | 18 | - | 1 | |
| -------------------------------------ATCATAGGGAGACACTAG-------- | 18 | - | 1 | |
| --------------------CTTTGACTAGCCTTATGATC----------------------- | 20 | - | 1 | |
| rat | ccaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggagacactaggccattgg | |||
| *************************************************************** | ||||
| ------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000040973 ENSRNOG00000033340 RGD1561446_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046337 ENSRNOG00000033340 RGD1561446_predicted | |||
| rat | ((((((((.((.((((((((...(((.((......)).))).)))))).))..)))))))))) | 1.000 -23.10 | ||
| rat | chromosome:1:51651901:51651963:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Same_strand|Boundary_non-coding|ENSRNOT00000048434|ENSRNOG00000033340 ## Same_strand|Intronic_non-coding|ENSRNOT00000046337|ENSRNOG00000033340 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## ENSRNOG00000033340|protein_coding|RGD1561446_predicted| |
sblock1532 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.35/0.46 | 18/24/0.33 | 0.0 0.5 0.0 | 0.0 0.3 0.0 | 1 11 1 | 0 0 0 | 1 1 1 | 0 0 0 | 4 21 9 | 1 -12 0 | 5arm 5arm_loop_3arm 3arm | 21 40 40 | nd nd nd | 0.29 0.47 0.30 | 2 6 2 | 15 | 2 | -1 | -5 |
| reads | miRBase family seed | |||
| seed | -----------------------UGACUAG---------------------------------- | 7 | novel | |
| seed | ----------------------UUGACUA----------------------------------- | 5 | novel | |
| seed | -----GGCUCUU---------------------------------------------------- | 1 | novel | |
| seed | ---------------------UUUGACU------------------------------------ | 1 | novel | |
| seed | ------------------------------------GAUCAUA--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------TTGACTAGCCTTATGATCA----------------------- | 19 | - | 6 | |
| ---------------------TTTGACTAGCCTTATGATC------------------------ | 19 | - | 3 | |
| ---------------------TTTGACTAGCCTTATGATCA----------------------- | 20 | - | 2 | |
| ----TGGCTCTTTGCTTCCTCTTTGACT------------------------------------ | 24 | 1 | - | |
| --------------------CTTTGACTAGCCTTATGATC------------------------ | 20 | - | 1 | |
| ----------------------TTGACTAGCCTTATGATC------------------------ | 18 | - | 1 | |
| -----------------------------------TGATCATAGGGATACACTAG--------- | 20 | - | 1 | |
| rat | ccaatggctctttgcttcctcTTTGACTAGCCTTATGATCAtagggatacactaggccattgga | |||
| **************************************************************** | ||||
| -------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| -------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((((((((.((.((..(((.((.(((.((......)).))).)))))..))..)))))))))). | 1.000 -22.70 | ||
| rat | chromosome:1:51819455:51819518:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
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