other hairpins
novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH (17 loci)
sblock12346 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.805 | no | no | 0.44/0.56 | 18/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 25 | -5 15 | 5arm_loop_3arm 3arm | 17 17 | nd nd | 0.56 0.44 | 5 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UUGUUGU--------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------GACUGUC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------------------------------------GTTGTTGTGTGATTGTCCCCTGTAA---------------------------------------------------------- | 25 | - | 1 | |
| -----------------------------------------------------------------------------TGACTGTCCCCTGTAAGG------------------------- | 18 | 1 | - | |
| rat | ggtgaggttgttgtgtgactgttccctgtaaggtgagGTTGTTGTGTGATTGTCCCCTGTAAggtgaggttgttgtgTGACTGTCCCCTGTAAGGtgaggttgttgtgtgattgtcccct | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019359 ENSRNOG00000014319 RGD1307234_predicted | |||
| rat | ((...((..((..((..((..((((((...(((...((..((..((..((...((((.....))...))..))..))..))...)))))...))).)))...))..))..))...)))). | 1.000 -26.50 | ||
| rat | chromosome:9:110592378:110592497:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000019206|ENSRNOG00000014319 ## Same_strand|Intronic_coding|ENSRNOT00000019359|ENSRNOG00000014319 ## ENSRNOG00000014319|protein_coding|RGD1307234_predicted| ## {Repeats: trf 495 513 0 class=trf,trf 404 429 0 class=trf,trf 466 491 0 class=trf,trf 528 553 0 class=trf} |
sblock12347 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.757 | no | no | 0.44/0.56 | 18/25/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 37 25 | -5 15 | 5arm_loop_3arm 3arm | 17 17 | nd nd | 0.56 0.44 | 5 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------UUGUUGU--------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------GACUGUC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------------------------------------GTTGTTGTGTGATTGTCCCCTGTAA---------------------------------------------------------- | 25 | - | 1 | |
| -----------------------------------------------------------------------------TGACTGTCCCCTGTAAGG------------------------- | 18 | 1 | - | |
| rat | ggtgaggttgttgtgtgactgttccctgtaaggtgagGTTGTTGTGTGATTGTCCCCTGTAAggtgaggttgttgtgTGACTGTCCCCTGTAAGGtgaggttgttgtgtgactgtcccct | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019359 ENSRNOG00000014319 RGD1307234_predicted | |||
| rat | ((...((..((..((..((..((((((...(((...((..((..((..((...((((.....))...))..))..))..))...)))))...))).)))...))..))..))...)))). | 1.000 -28.00 | ||
| rat | chromosome:9:110592719:110592838:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000019206|ENSRNOG00000014319 ## Same_strand|Intronic_coding|ENSRNOT00000019359|ENSRNOG00000014319 ## ENSRNOG00000014319|protein_coding|RGD1307234_predicted| ## {Repeats: trf 805 823 0 class=trf,trf 836 854 0 class=trf,trf 745 770 0 class=trf,trf 712 730 0 class=trf,trf 869 894 0 class=trf} |
sblock4258 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.511 | no | no | 0.58/0.74 | 19/23/0.20 | 0.7 0.0 | 2.0 0.0 | 3 2 | 0 0 | 3 1 | 0 0 | 24 22 | -7 -5 | 5arm_loop_3arm 3arm_loop | 14 14 | nd nd | 0.37 0.42 | 3 4 | 5 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------CCGCAGG--------------------------------- | 2 | novel | |||
| seed | --------------------------UGGGCGA------------------------------------------------- | 2 | novel | |||
| seed | -------------------------CUGGGCG-------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T2S2 | |||
| -----------------------------------------TCCGCAGGTGCTGGCAGCC---------------------- | 19 | 2 | - | - | - | |
| -------------------------CTGGGCGAGTTTTCCTTCCGCAG---------------------------------- | 23 | - | - | 1 | - | |
| -------------------------CTGGGCGAGTTTTCCTTCC-------------------------------------- | 19 | - | 1 | - | - | |
| ------------------------CCTGGGCGAGTTTTCCTTC--------------------------------------- | 19 | - | - | - | 1 | |
| rat | ttggcgcaggcagcagcgcgtgttCCTGGGCGAGTTTTCCTTCCGCAGGTGCTGGCAGCCggggcgccgcggcccacgctga | |||||
| ********************************************************************************** | ||||||
| rat | ((((((..(((....(((.(((.((((((((.(((...(((.....))).))).))..)))))))))))).)))..)))))) | 0.810 -36.60 | ||||
| rat | chromosome:14:49766850:49766931:1 | intergenic ## {SimpF: 1 Eponine} |
block1612469 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.428 | no | no | 0.72/0.79 | 18/19/0.00 | 0.5 0.0 | 1.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 11 18 | 1 -5 | 5arm 5arm_loop_3arm | 24 24 | nd nd | 0.37 0.42 | 3 4 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------GAGACAG--------------------------------------------------- | 1 | novel | |
| seed | -------------AGACAGC-------------------------------------------------- | 1 | novel | |
| seed | -------------------CGCCGGG-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ------------------GCGCCGGGGCAAGCGAGAG--------------------------------- | 19 | - | 1 | |
| -----------AGAGACAGCGCCGGGGCA----------------------------------------- | 18 | - | 1 | |
| ------------GAGACAGCGCCGGGGCAAG--------------------------------------- | 19 | 1 | - | |
| rat | ctgagctccatAGAGACAGCGCCGGGGCAAGCGAGAGccggatgggcactgggcaactctgtgcctcgag | |||
| ********************************************************************** | ||||
| -------------------------------------------------------------------------------- | ENSRNOT00000044147 ENSRNOG00000031709 Ppfibp1 | |||
| -------------------------------------------------------------------------------- | ENSRNOT00000051872 ENSRNOG00000031709 Ppfibp1 | |||
| rat | .((((...(((((((...((.((((.((..((....)).......)).))))))..))))))).)))).. | 0.700 -23.30 | ||
| rat | chromosome:4:184613394:184613463:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000051872|ENSRNOG00000031709 ## ENSRNOG00000031709|protein_coding|Ppfibp1|PTPRF interacting protein, binding protein 1 (liprin beta 1) Gene [Source:MGI (curated);Acc:Ppfibp1-001] |
sblock1 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.393 | no | no | 0.44/0.53 | 18/19/0.00 | 1.0 0.0 | 1.5 0.0 | 2 2 | 0 0 | 2 2 | 0 0 | 0 35 | 42 -2 | 5arm 3arm_loop | 18 18 | nd nd | 0.42 0.32 | 8 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------GGCAAGC---------------------------------------------- | 2 | novel | ||
| seed | ---UUCUUAA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -CCUUCUU--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S2 | T5S1 | |||
| -----------------------------------------------------------------AGGCAAGCTCCAAAGTTGC----------------------------------- | 19 | - | 1 | 1 | |
| --CTTCTTAAATGGTCCTGGC-------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| GCCTTCTTAAATGGTCCT----------------------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | GCCTTCTTAAATGGTCCTGGCtgctttgccctgtgtcctgcggttggattctgtgaggcatgctcAGGCAAGCTCCAAAGTTGCgacatggtgagcacattgtcagggcacacaaaggg | ||||
| *********************************************************************************************************************** | |||||
| rat | .((((........(((((((((((((....(((((((..((..(((((.........((.(((....))).))))))).))...))))))).)))))....)))))))).....)))). | 0.880 -37.22 | |||
| rat | chromosome:1:534878:534996:-1 | intergenic |
sblock1131 [novel_lenNOK_multiarm_Multihit_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.44/0.53 | 18/19/0.00 | 1.0 0.0 | 1.5 0.0 | 2 2 | 0 0 | 2 2 | 0 0 | 0 35 | 42 -2 | 5arm 3arm_loop | 18 18 | nd nd | 0.44 0.42 | 8 3 | 4 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------GGCAAGC---------------------------------------------- | 2 | novel | ||
| seed | ---UUCUUAA------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -CCUUCUU--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T3S2 | T5S1 | |||
| -----------------------------------------------------------------AGGCAAGCTCCAAAGTTGC----------------------------------- | 19 | - | 1 | 1 | |
| --CTTCTTAAATGGTCCTGGC-------------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| GCCTTCTTAAATGGTCCT----------------------------------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | GCCTTCTTAAATGGTCCTGGCtgctctgctctgtgtcctgtggttggattctgtgaggcatgctcAGGCAAGCTCCAAAGTTGCaacatggtgagcacattgtcagggcacacaaagga | ||||
| *********************************************************************************************************************** | |||||
| rat | .((((........((((((((.....(((((.....((....((((....((.((..((.(((....))).))..)).))...))))..)).)))))....)))))))).....)))). | 0.650 -37.12 | |||
| rat | chromosome:1:417022:417140:1 | intergenic |
novel_multiarm_loopOverlap_nonpairedHIGH (17 loci)
block171586 [novel_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.442 | no | no | 0.50/0.52 | 18/23/0.75 | 0.0 0.0 | 0.0 0.7 | 1 3 | 0 0 | 1 1 | 0 0 | 33 39 | -1 -12 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.33 0.39 | 2 6 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------CCAGAGA------------------------------------------------------------------ | 3 | novel | |
| seed | ----------------------------------AAUCCGC------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| ---------------------------------------GCCAGAGACTATAGGGCTAGT----------------------------------------------------- | 21 | - | 2 | |
| ---------------------------------CAATCCGCCAGAGACTAT-------------------------------------------------------------- | 18 | 1 | - | |
| ---------------------------------------GCCAGAGACTATAGGGCTAGTAC--------------------------------------------------- | 23 | - | 1 | |
| rat | tcttactaggtttctgcaccaacactcccacctCAATCCGCCAGAGACTATAGGGCTAGTACtcaacttctgtggacctgggtttgtttccctgtttgtaaaaccaagaaagg | |||
| ***************************************************************************************************************** | ||||
| rat | .(((.((.(((((.((((.(((((..((((......(((((..(((((((......)))).))).......)))))..))))..))).....))..))))))))).)).))). | 0.730 -23.20 | ||
| rat | chromosome:11:78541360:78541472:1 | intergenic |
block751166 [novel_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.318 | no | no | 0.60/0.62 | 20/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 40 15 | -19 -4 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.55 0.42 | 8 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------UCAUAGG------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------GGUCCAG------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| ---------------------------------------------AGGTCCAGGCCAGTCCTTCCATGC--------------- | 24 | 1 | - | |
| ----------------------------------------GTCATAGGTCCAGGCCAGTC------------------------ | 20 | - | 1 | |
| rat | agagttgggcacaaagcaacgaggtcacaggggcaaactgGTCATAGGTCCAGGCCAGTCCTTCCATGCcctgtgtgtatattc | |||
| ************************************************************************************ | ||||
| rat | .((((((.(((((..(((..((((.......(((...((((........)))))))...))))...)))..))))).)).)))) | 0.600 -22.90 | ||
| rat | chromosome:18:60144970:60145053:1 | intergenic |
block848835 [novel_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.327 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 20 28 | -1 -9 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.45 0.55 | 3 5 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------CCGUGAG-------------------------------------------- | 1 | novel | |
| seed | -----------------------------CAGCAGG------------------------------------ | 1 | miR-214 | |
| len | cloning frequencies | |||
| T2S1 | T3S1 | |||
| --------------------GCCGTGAGACAGCAGGAGTT-------------------------------- | 20 | - | 1 | |
| ----------------------------ACAGCAGGAGTTAGGCGCGA------------------------ | 20 | 1 | - | |
| rat | ccggtcccagcggccattttGCCGTGAGACAGCAGGAGTTAGGCGCGAtgctttccactgccgcttaccggg | |||
| ************************************************************************ | ||||
| ..................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000002037 ENSRNOG00000001488 Psmb1 | |||
| rat | (((((...((((((.........(((.((.((((...((.....))..)))).))))).)))))).))))). | 0.410 -25.80 | ||
| rat | chromosome:1:54388774:54388845:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000002037|ENSRNOG00000001488 ## ENSRNOG00000001488|protein_coding|Psmb1|Proteasome subunit beta type-1 precursor (EC 3.4.25.1) (Proteasome component C5) (Macropain subunit C5) (Multicatalytic endopeptidase complex subunit C5) (Proteasome gamma chain). [Source:UniProtKB/Swiss-Prot;Acc:P18421] |
block927852 [novel_multiarm_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.495 | no | no | 0.46/0.52 | 23/24/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 5 14 | -1 -11 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.35 0.58 | 3 6 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------AAACCGU------------------------------------------------- | 1 | novel |
| seed | ------CCAGCUG---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --------------TAAACCGTCAGTCAAATTGGGCAC--------------------------------- | 24 | 1 | |
| -----GCCAGCTGATAAACCGTCAGTCA------------------------------------------- | 23 | 1 | |
| rat | gttttGCCAGCTGATAAACCGTCAGTCAAATTGGGCACagcggcacacatcaggtggaggcaggaggagca | ||
| *********************************************************************** | |||
| rat | (((((.(((.(((((...((((..(((......)))...)))).....))))).)))........))))). | 0.440 -18.00 |
| rat | chromosome:1:241525020:241525090:-1 | intergenic |
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