miR-Intess: classification

other hairpins

novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH (16 loci)

block2551072 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.215	no	no	0.30/0.50	18/24/0.98	0.0	0.0	17	0	5	0	2	30	5arm	4	nd	0.42	5	42	5	na	na

		reads	miRBase family seed
seed	---GAGCACU-------------------------------------------------------------------------------------------------	34	novel
seed	----------AGCAUGU------------------------------------------------------------------------------------------	5	novel
seed	---------------GUCUGAU-------------------------------------------------------------------------------------	1	novel
seed	----AGCACUA------------------------------------------------------------------------------------------------	1	novel
seed	--------------UGUCUGA--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T4S1	T5S1
	--TGAGCACTAGCATGTCTGATCAGT---------------------------------------------------------------------------------	24	2	1	-	-	17
	--TGAGCACTAGCATGTCTGATCAG----------------------------------------------------------------------------------	23	1	1	-	1	5
	--TGAGCACTAGCATGTCTGATCA-----------------------------------------------------------------------------------	22	1	-	1	-	3
	---------TAGCATGTCTGATCAGTATGA-----------------------------------------------------------------------------	21	2	-	-	-	2
	---------TAGCATGTCTGATCAGTATGAAT---------------------------------------------------------------------------	23	-	-	-	-	1
	--------------TGTCTGATCAGTATGAATTTG------------------------------------------------------------------------	21	-	-	-	-	1
	---GAGCACTAGCATGTCTGATCAGT---------------------------------------------------------------------------------	23	-	-	-	-	1
	--TGAGCACTAGCATGTCTG---------------------------------------------------------------------------------------	18	-	-	1	-	-
	-------------ATGTCTGATCAGTATGAATTTGA-----------------------------------------------------------------------	23	-	-	-	-	1
rat	caTGAGCACTAGCATGTCTGATCAGTatgaatttgattatagctttcactctttaattacctttgcttgtgtggctgtggttctgtgtacatgtgtgtgcacacgtg
	***********************************************************************************************************
rat	((((.((((..((((((.....(((.........((((((((((..(((....(((......)))...))).)))))))))))))...))))))..))))...))))	0.470 -25.00

rat

chromosome:9:105242282:105242388:-1

intergenic

block2551368 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.158	no	no	0.30/0.50	18/24/0.98	0.0	0.0	17	0	5	0	2	30	5arm	4	nd	0.42	5	42	5	na	na

		reads	miRBase family seed
seed	---GAGCACU-------------------------------------------------------------------------------------------------	34	novel
seed	----------AGCAUGU------------------------------------------------------------------------------------------	5	novel
seed	---------------GUCUGAU-------------------------------------------------------------------------------------	1	novel
seed	----AGCACUA------------------------------------------------------------------------------------------------	1	novel
seed	--------------UGUCUGA--------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T4S1	T5S1
	--TGAGCACTAGCATGTCTGATCAGT---------------------------------------------------------------------------------	24	2	1	-	-	17
	--TGAGCACTAGCATGTCTGATCAG----------------------------------------------------------------------------------	23	1	1	-	1	5
	--TGAGCACTAGCATGTCTGATCA-----------------------------------------------------------------------------------	22	1	-	1	-	3
	---------TAGCATGTCTGATCAGTATGA-----------------------------------------------------------------------------	21	2	-	-	-	2
	---------TAGCATGTCTGATCAGTATGAAT---------------------------------------------------------------------------	23	-	-	-	-	1
	--------------TGTCTGATCAGTATGAATTTG------------------------------------------------------------------------	21	-	-	-	-	1
	---GAGCACTAGCATGTCTGATCAGT---------------------------------------------------------------------------------	23	-	-	-	-	1
	--TGAGCACTAGCATGTCTG---------------------------------------------------------------------------------------	18	-	-	1	-	-
	-------------ATGTCTGATCAGTATGAATTTGA-----------------------------------------------------------------------	23	-	-	-	-	1
rat	caTGAGCACTAGCATGTCTGATCAGTatgaatttgattatagctttcactctttaattacctttgcttgtgtggctgtggttctgtgtacatgtgtgtgcacacatg
	***********************************************************************************************************
	---------------------------------------------------------------------------------------------------------------------	ENSRNOT00000047326 ENSRNOG00000037286 LOC367336
rat	((((.((((..((((((.....(((.........((((((((((..(((....(((......)))...))).)))))))))))))...))))))..))))...))))	0.460 -25.40

rat

chromosome:9:105315039:105315145:-1

block2312031 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.591	no	no	0.33/0.57	18/23/0.86	0.0	0.0	12	0	4	0	4	5	3arm	1	nd	0.50	6	21	4	na	na

		reads	miRBase family seed
seed	-----------------------------------------------CGUAUGU----------------	17	novel
seed	-------------------------------------------GUAUCGU--------------------	1	novel
seed	---------------------------------------------AUCGUAU------------------	1	novel
seed	---------------------------------------GUUUGUA------------------------	1	novel
seed	------------------------------------------UGUAUCG---------------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T5S1	T5S2
	----------------------------------------------TCGTATGTTTCTGGCCCTTG----	20	1	2	12	-
	--------------------------------------------TATCGTATGTTTCTGGCCCT------	20	-	-	1	-
	----------------------------------------------TCGTATGTTTCTGGCCCTTGCCC-	23	-	-	-	1
	------------------------------------------TGTATCGTATGTTTCTGGC---------	19	-	-	1	-
	----------------------------------------------TCGTATGTTTCTGGCCCT------	18	-	1	-	-
	--------------------------------------TGTTTGTATCGTATGTTTCTG-----------	21	-	-	1	-
	-----------------------------------------TTGTATCGTATGTTTCTG-----------	18	-	-	1	-
rat	tggggattccagtctcacagctctgcaattgtctcccgtgtttgtaTCGTATGTTTCTGGCCCTTGccca
	**********************************************************************
rat	..(((...((((....(((((..(((((.............)))))..)).)))..))))......))).	0.990 -12.62

rat

chromosome:8:57741329:57741398:-1

intergenic

block2325357 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.390	no	no	0.40/0.50	20/20/1.00	0.0 0.0	0.0 0.0	9 1	0 0	2 1	0 0	4 11	24 17	5arm 5arm	1 1	nd nd	0.35 0.45	4 4	11	3	na	na

		reads	miRBase family seed
seed	-----GAGUCAU------------------------------------------------------------------------------------------------------------	10	novel
seed	------------GUAGCAC-----------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S1	T2S2	T5S1
	----TGAGTCATGTAGCACAAATG------------------------------------------------------------------------------------------------	20	-	1	9
	-----------TGTAGCACAAATGCCCACAG-----------------------------------------------------------------------------------------	20	1	-	-
rat	gtctTGAGTCATGTAGCACAAATGcccacaggatagtagattcttttaaatgttggatgaatgaatgaatgtatgaatgaatgaatgaatgggtgtgtctaatgaaagcatttcaagacc
	************************************************************************************************************************
rat	((((((((((((...((((....(((((((.....(((.((((.((((.............)))).)))).))).......))......)))))))))...))))......)))))))).	0.630 -22.72

rat

chromosome:8:72083184:72083303:-1

intergenic

block1093526 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.047	no	no	0.54/0.61	18/26/0.71	0.0	0.0	7	0	3	0	1	24	5arm	1	nd	0.39	5	14	3	na	na

		reads	miRBase family seed
seed	--GGGACUA---------------------------------------------------------------------------------------------------	10	novel
seed	-----ACUACGC------------------------------------------------------------------------------------------------	3	novel
seed	----GACUACG-------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T4S1	T5S1
	-TGGGACTACGCGGTGTTGCATCT------------------------------------------------------------------------------------	23	1	-	7
	-TGGGACTACGCGGTGTTG-----------------------------------------------------------------------------------------	18	-	-	2
	----GACTACGCGGTGTTGCATCT------------------------------------------------------------------------------------	20	-	1	1
	---GGACTACGCGGTGTTGCA---------------------------------------------------------------------------------------	18	-	-	1
	----GACTACGCGGTGTTGCATCTATCTCC------------------------------------------------------------------------------	26	-	-	1
rat	aTGGGACTACGCGGTGTTGCATCTatctcctcagcctccttcctagagttaagagttctcaaggtggcttctctgggcttagtgaggtagatcttggctggaagccca
	************************************************************************************************************
rat	.((((.((...((((.....(((((((((((.(((((((..(((.(((.........))).))).)).......))))).)).)))))))))....))))..))))))	0.930 -34.91

rat

chromosome:20:5539344:5539451:1

intergenic

block1414081 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.349	no	no	0.29/0.35	18/21/0.92	0.0	0.0	14	0	6	0	3	11	3arm	2	nd	0.40	4	24	6	na	na

		reads	miRBase family seed
seed	------------------------------------------------AGCCUUU---------------	21	novel
seed	---------------------------------------------UAUAGCC------------------	2	novel
seed	----------------------------------------------AUAGCCU-----------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T5S1
	-----------------------------------------------TAGCCTTTTAGAGTTTCATG---	20	1	1	1	1	1	14
	--------------------------------------------TTATAGCCTTTTAGAGTTTC------	20	-	-	-	-	-	1
	--------------------------------------------TTATAGCCTTTTAGAGTTTCA-----	21	-	-	-	-	-	1
	-----------------------------------------------TAGCCTTTTAGAGTTTCA-----	18	-	-	-	-	-	1
	-----------------------------------------------TAGCCTTTTAGAGTTTCAT----	19	1	-	-	-	-	-
	---------------------------------------------TATAGCCTTTTAGAGTTTCA-----	20	-	-	-	-	-	1
rat	gggccagctgaaggtgggaagggaagacacattagatcccgtccttaTAGCCTTTTAGAGTTTCATGctt
	**********************************************************************
rat	.(((.((((((((((((((.((((............)))).))))....))))))...))))....))).	0.940 -17.30

rat

chromosome:3:141689065:141689134:-1

intergenic

block1469314 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.298	no	no	0.44/0.58	18/25/0.82	0.0	0.0	16	0	4	0	1	22	5arm	1	nd	0.48	4	33	4	na	na

		reads	miRBase family seed
seed	--CCUGAGC----------------------------------------------------------------------------------------	19	novel
seed	---------------------CUUACCU---------------------------------------------------------------------	4	novel
seed	-------------------UCCUUAC-----------------------------------------------------------------------	3	novel
seed	-----------------------UACCUUC-------------------------------------------------------------------	3	novel
seed	--------CUUGCAG----------------------------------------------------------------------------------	1	novel
seed	---CUGAGCU---------------------------------------------------------------------------------------	1	novel
seed	-----GAGCUUG-------------------------------------------------------------------------------------	1	novel
seed	-----------GCAGAGA-------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T1S2	T4S1	T4S2	T5S1
	-TCCTGAGCTTGCAGAGAGTCCTT-------------------------------------------------------------------------	23	2	-	1	16
	--------------------CCTTACCTTCACAGAAGCAG---------------------------------------------------------	20	-	-	-	2
	------------------GTCCTTACCTTCACAGAAGCAGG--------------------------------------------------------	23	-	-	-	2
	----------------------TTACCTTCACAGAAGCAGG--------------------------------------------------------	19	-	-	-	1
	----------------------TTACCTTCACAGAAGCAG---------------------------------------------------------	18	-	-	1	-
	-------GCTTGCAGAGAGTCCTTACCTTCA------------------------------------------------------------------	24	-	-	-	1
	----TGAGCTTGCAGAGAGTCCT--------------------------------------------------------------------------	19	-	1	-	-
	----------TGCAGAGAGTCCTTACCTTCACAGA--------------------------------------------------------------	25	-	-	-	1
	----------------------TTACCTTCACAGAAGCAGGCCCG----------------------------------------------------	23	-	-	-	1
	------------------GTCCTTACCTTCACAGAAGCA----------------------------------------------------------	21	-	-	-	1
	--------------------CCTTACCTTCACAGAAGCA----------------------------------------------------------	19	-	-	-	1
	--------------------CCTTACCTTCACAGAAGCAGGCCC-----------------------------------------------------	24	-	-	-	1
	--CCTGAGCTTGCAGAGAGTCCTTACC----------------------------------------------------------------------	25	-	-	-	1
rat	cTCCTGAGCTTGCAGAGAGTCCTTaccttcacagaagcaggcccgatcagttgggtaccttagtggtggtttctgagtcacttagggaatatggaga
	*************************************************************************************************
rat	((((....(((..((.((.((...(((.((((..(((...((((((....))))))..))).)))).)))....)).)).))..))).....)))).	0.790 -27.60

rat

chromosome:3:76936405:76936501:1

intergenic

block1470270 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.187	no	no	0.36/0.50	22/26/0.90	0.0 1.0	0.0 0.4	1 9	0 0	1 5	0 0	20 4	-4 6	3arm_loop 3arm	1 1	nd nd	0.38 0.43	5 4	10	5	na	na

		reads	miRBase family seed
seed	------------------------------------------------------------CUCAGCC------------------	7	novel
seed	----------------------------------------------------UAGGCAG--------------------------	1	novel
seed	------------------------------------------GGAUGCU------------------------------------	1	novel
seed	-----------------------------------------------------------UCUCAGC-------------------	1	novel
		len	cloning frequencies
			T2S1	T3S2	T4S1	T4S2	T5S1
	-----------------------------------------------------------TCTCAGCCACAATACTAATTCT----	22	1	1	1	1	3
	----------------------------------------------------------GTCTCAGCCACAATACTAATTCT----	23	-	-	-	-	1
	-----------------------------------------AGGATGCTTCTTAGGCAGTCTCAG--------------------	24	-	-	-	-	1
	---------------------------------------------------TTAGGCAGTCTCAGCCACAATACTAA--------	26	-	-	-	-	1
rat	gcagatatgtcactggtggggaagggataggaaccagcagaAGGATGCTTCTTAGGCAGTCTCAGCCACAATACTAATTCTagca
	*************************************************************************************
rat	(((((...((...((((.((((.....(((((...((((......))))))))).....)))).))))....))....))).)).	0.770 -20.60

rat

chromosome:3:76973486:76973570:1

intergenic

block1499965 [novel_cloningOK_shortStem_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.349	no	no	0.29/0.35	18/21/0.92	0.0	0.0	14	0	6	0	3	11	3arm	2	nd	0.40	4	24	6	na	na

		reads	miRBase family seed
seed	------------------------------------------------AGCCUUU---------------	21	novel
seed	---------------------------------------------UAUAGCC------------------	2	novel
seed	----------------------------------------------AUAGCCU-----------------	1	novel
		len	cloning frequencies
			T1S1	T1S2	T2S1	T3S1	T3S2	T5S1
	-----------------------------------------------TAGCCTTTTAGAGTTTCATG---	20	1	1	1	1	1	14
	--------------------------------------------TTATAGCCTTTTAGAGTTTC------	20	-	-	-	-	-	1
	--------------------------------------------TTATAGCCTTTTAGAGTTTCA-----	21	-	-	-	-	-	1
	-----------------------------------------------TAGCCTTTTAGAGTTTCA-----	18	-	-	-	-	-	1
	-----------------------------------------------TAGCCTTTTAGAGTTTCAT----	19	1	-	-	-	-	-
	---------------------------------------------TATAGCCTTTTAGAGTTTCA-----	20	-	-	-	-	-	1
rat	gggccagctgaaggtgggaagggaagacacattagatcccgtccttaTAGCCTTTTAGAGTTTCATGctt
	**********************************************************************
rat	.(((.((((((((((((((.((((............)))).))))....))))))...))))....))).	0.940 -17.30

rat

chromosome:3:141760755:141760824:1

intergenic

novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (16 loci)

block5994 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.714	no	no	1.00/1.00	19/19/0.00	0.0	0.0	1	0	1	0	40	-4	5arm_loop_3arm	2	nd	0.42	4	1	1	na	na

		reads	miRBase family seed
seed	-----------------------------------------GCGCGCG-------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	----------------------------------------GGCGCGCGCGCGCGCGCGG--------------------------------------------------	19	1
rat	gctcgtagtgtctaggctttccaagccagtgtctcgcgggGGCGCGCGCGCGCGCGCGGgcacgggctcgctccccagggggcagttggcggcgggagcgggcggcggg
	*************************************************************************************************************
rat	.(((((...((((..((((((...(((((((((((...((((.(((.((.((.((....)).)).)).))).))))..)))))).)))))...)))))))))).)))))	0.430 -55.60