other hairpins
novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (16 loci)
block2189164 [novel_lenNOK_shortStem_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.35/0.36 | 20/25/0.50 | 2.5 | 0.0 | 2 | 0 | 1 | 0 | 0 | -4 | 5arm_loop | 10 | nd | 0.36 | 5 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------GAAACUC------------------------------------------------- | 1 | novel |
| seed | -GACAUGA------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| TGACATGAAACTCCATGATTCAAAG------------------------------------- | 25 | 1 | |
| -----TGAAACTCCATGATTCAAAG------------------------------------- | 20 | 1 | |
| rat | TGACATGAAACTCCATGATTCAAAGcctctccataatgttagaatctggagaagtcacagtc | ||
| ************************************************************** | |||
| rat | .(((.(((..(((((.(((((....................))))))))))...)))..))) | 0.990 -13.55 |
| rat | chromosome:7:17426157:17426218:1 | intergenic |
novel_multiarm_DicerNOK_Multihit_nonpairedHIGH (16 loci)
sblock1397 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.214 | no | no | 0.45/0.60 | 20/24/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 17 32 0 | 17 6 33 | 5arm 5arm 3arm | 17 52 52 | nd nd nd | 0.38 0.60 0.47 | 3 8 6 | 3 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------------------------GACUCAU------------ | 1 | novel | |
| seed | ------------------AGCAGCC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------GCAGGAC----------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------------------------------------------------------------------------TGACTCATGACATCCACTGT | 20 | - | 1 | |
| -----------------TAGCAGCCAGACTTTTGCAGGACC---------------------------------------------------------------------------- | 24 | - | 1 | |
| --------------------------------TGCAGGACCTCTACTGGCAC----------------------------------------------------------------- | 20 | 1 | - | |
| rat | tagaagatgtactctttTAGCAGCCAGACTTTTGCAGGACCTCTACTGGCACaataattcctctgttgttggacctccaccgttagttcaatggcacTGACTCATGACATCCACTGT | |||
| ********************************************************************************************************************* | ||||
| rat | (((..(((((......((((..((((((((..((..(((........((..(((((((......)))))))..)))))..))..))))...)))).))))......)))))..))). | 0.850 -25.80 | ||
| rat | chromosome:1:51026778:51026894:1 | intergenic |
sblock3000 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.189 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 30 12 | 8 25 | 5arm 3arm | 455 455 | nd nd | 0.50 0.38 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------GGGGUUG------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC--------------------------------------------- | 1 | novel | |
| seed | -------------------------------AGCAGAC---------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC------------ | 21 | 2 | - | |
| ------------------------------GAGCAGACTGCAGGAGATGA---------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA--------------------------------- | 20 | - | 1 | |
| rat | cttcaggggatgacggggttggtaacaatgGAGCAGACTGCAGGAGATGAcagagttagtaataatgGAGCAGACTGCAGGAGATGATGGGGTTGGTAACAATGGAGCagactgcaggag | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((....((.((..((((.((((..((...((..((((((....((.....((((....))))....))..))))))....)).))..)))).))))..))...))..))).))).. | 0.940 -27.80 | ||
| rat | chromosome:11:81725762:81725881:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 901 922 0 class=trf,trf 552 572 0 class=trf,trf 737 757 0 class=trf,trf 959 979 0 class=trf,trf 922 942 0 class=trf,trf 848 868 0 class=trf,trf 515 535 0 class=trf,trf 679 700 0 class=trf,trf 774 794 0 class=trf,trf 663 683 0 class=trf,trf 753 774 0 class=trf,trf 864 885 0 class=trf,trf 885 905 0 class=trf,trf 827 848 0 class=trf,trf 568 589 0 class=trf,trf 1033 1053 0 class=trf,trf 716 737 0 class=trf,trf 478 498 0 class=trf,trf 700 720 0 class=trf,trf 605 626 0 class=trf} |
sblock3002 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.051 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 30 9 | 8 25 | 5arm 3arm | 455 455 | nd nd | 0.50 0.38 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------GGGGUUG---------------------- | 2 | novel | |
| seed | -------------------------------AGCAGAC------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC--------- | 21 | 2 | - | |
| ------------------------------GAGCAGACTGCAGGAGATGA------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------------------------ | 20 | - | 1 | |
| rat | ctgcaggagatgactgagttagtaataatgGAGCAGACTGCAGGAGATGAcaaagttagtaataataGAGCAGACTGCAGGAGATGATGGGGTTGGTAACAATGGAGCagactgcag | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((....((.((..((((.((((..((...((..((((((....((.....((((....))))....))..))))))....)).))..)))).))))...))..))..)))))) | 0.440 -27.10 | ||
| rat | chromosome:11:81727098:81727214:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 3365 3385 0 class=trf,trf 2810 2830 0 class=trf,trf 2588 2608 0 class=trf,trf 2440 2460 0 class=trf,trf 2699 2719 0 class=trf,trf 3328 3348 0 class=trf,trf 2884 2904 0 class=trf,trf 2329 2349 0 class=trf,trf 2403 2423 0 class=trf,trf 2292 2312 0 class=trf,trf 3032 3052 0 class=trf,trf 2847 2867 0 class=trf,trf 3291 3311 0 class=trf,trf 2366 2386 0 class=trf,trf 2107 2127 0 class=trf,trf 3180 3200 0 class=trf,trf 3069 3089 0 class=trf,trf 1996 2016 0 class=trf,trf 2070 2090 0 class=trf,trf 2625 2645 0 class=trf,trf 3402 3422 0 class=trf,trf 3106 3126 0 class=trf,trf 3476 3496 0 class=trf,trf 3254 3274 0 class=trf,trf 3143 3163 0 class=trf,trf 3439 3459 0 class=trf,trf 2662 2682 0 class=trf,trf 2958 2978 0 class=trf,trf 2514 2534 0 class=trf,trf 2773 2793 0 class=trf,trf 2736 2756 0 class=trf,trf 2033 2053 0 class=trf,trf 2144 2164 0 class=trf,trf 2477 2497 0 class=trf,trf 3217 3237 0 class=trf,trf 2921 2941 0 class=trf,trf 2234 2255 0 class=trf,trf 2255 2275 0 class=trf,trf 2995 3015 0 class=trf,trf 2181 2201 0 class=trf,trf 2218 2238 0 class=trf} |
sblock3004 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.018 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 13 31 | 24 5 | 5arm 3arm | 50 455 | nd nd | 0.38 0.45 | 3 4 | 3 | 2 | -18 | -19 |
| reads | miRBase family seed | |||
| seed | --------------GGGGUUG------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| -------------TGGGGTTGGTAACAATGGAGC------------------------------------------------------------------------------------ | 21 | 2 | - | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------------------------- | 20 | - | 1 | |
| rat | ctgcaggagatgaTGGGGTTGGTAACAATGGAGCagactgcagaagatgacagagttagtaataataGAGCAGACTGCAGGAGATGAtggggttagtaataatggagcagactgcagg | |||
| ********************************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((....((.((..((((.((((..((...((..((((((....((.....((((....))))....))..))))))....)).))..)))).))))..))...))..)))))). | 0.960 -28.50 | ||
| rat | chromosome:11:81731246:81731363:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 601 622 0 class=trf,trf 511 531 0 class=trf,trf 548 568 0 class=trf,trf 474 494 0 class=trf,trf 622 642 0 class=trf} |
sblock3006 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.201 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 5 24 | 28 1 | 5arm 3arm | 455 455 | nd nd | 0.35 0.33 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------GGGGUUG------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------------------AGCAGAC-------------------- | 1 | novel | |
| seed | ------AGCAGAC---------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| --------------------------------------------------------------TGGGGTTGGTAACAATGGAGC------------------------ | 21 | 2 | - | |
| -----GAGCAGACTGCAGGAGATGA---------------------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------------------GAGCAGACTGCAGGAGATGA-------- | 20 | - | 1 | |
| rat | taatgGAGCAGACTGCAGGAGATGAcggggttggtaacaatggagcagactgcaggagatggTGGGGTTGGTAACAATGGAGCAGACTGCAGGAGATGActgagtta | |||
| *********************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((..((((..((((((....((.((..((((.((((...........((((........)))).)))).))))..))...))..))))))....)).))..)))) | 0.420 -23.00 | ||
| rat | chromosome:11:81733415:81733521:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 2710 2731 0 class=trf,trf 2546 2566 0 class=trf,trf 2435 2455 0 class=trf,trf 2361 2381 0 class=trf,trf 2620 2640 0 class=trf,trf 2398 2418 0 class=trf,trf 2139 2159 0 class=trf,trf 2657 2677 0 class=trf,trf 2028 2048 0 class=trf,trf 2472 2492 0 class=trf,trf 2287 2307 0 class=trf,trf 2213 2233 0 class=trf,trf 2694 2714 0 class=trf,trf 2266 2287 0 class=trf,trf 2488 2509 0 class=trf,trf 2102 2122 0 class=trf,trf 2583 2603 0 class=trf,trf 2250 2270 0 class=trf,trf 2509 2529 0 class=trf,trf 2324 2344 0 class=trf,trf 2176 2196 0 class=trf,trf 2065 2085 0 class=trf} |
sblock3008 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 13 29 | 28 1 | 5arm 3arm | 455 455 | nd nd | 0.45 0.33 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------GGGGUUG------------------------------------------ | 2 | novel | |
| seed | --------------AGCAGAC--------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------------------------AGCAGAC------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ----------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC----------------------------- | 21 | 2 | - | |
| ---------------------------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------- | 20 | - | 1 | |
| -------------GAGCAGACTGCAGGAGATGA--------------------------------------------------------------------------------------- | 20 | - | 1 | |
| rat | gttagtaataatgGAGCAGACTGCAGGAGATGAcggggttggtaacaatggagcagactgcaggagatggTGGGGTTGGTAACAATGGAGCAGACTGCAGGAGATGAgggggttagtaat | |||
| ************************************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((.((((.......((..((((((....((.((..((((.((((...........((((........)))).)))).))))..))...))..))))))....)).....)))).)))) | 0.450 -24.20 | ||
| rat | chromosome:11:81734335:81734454:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 3545 3565 0 class=trf,trf 3582 3602 0 class=trf,trf 3635 3656 0 class=trf,trf 3619 3639 0 class=trf} |
sblock3011 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.028 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 2 2 | 0 0 | 1 1 | 0 0 | 30 9 | 8 25 | 5arm 3arm | 455 455 | nd nd | 0.50 0.38 | 4 3 | 4 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------GGGGUUG---------------------- | 2 | novel | |
| seed | -------------------------------AGCAGAC------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| ---------------------------------------------------------------------------------------TGGGGTTGGTAACAATGGAGC--------- | 21 | 2 | - | |
| ------------------------------GAGCAGACTGCAGGAGATGA------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------------------------ | 20 | - | 1 | |
| rat | ctgcaggagatgacggagttagtaataatgGAGCAGACTGCAGGAGATGAcggggttagtaataatgGAGCAGACTGCAGGAGATGATGGGGTTGGTAACAATGGAGCagactgcag | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((....((.((..((((.((((..((...((..((((((....((.....((((....))))....))..))))))....)).))..)))).))))..))...))..)))))) | 0.990 -29.70 | ||
| rat | chromosome:11:81735539:81735655:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 5173 5193 0 class=trf,trf 4560 4581 0 class=trf,trf 5136 5156 0 class=trf,trf 5099 5119 0 class=trf,trf 4951 4971 0 class=trf,trf 5247 5267 0 class=trf,trf 4692 4712 0 class=trf,trf 4581 4601 0 class=trf,trf 4544 4564 0 class=trf,trf 4618 4638 0 class=trf,trf 4819 4840 0 class=trf,trf 4803 4823 0 class=trf,trf 4729 4749 0 class=trf,trf 4914 4934 0 class=trf,trf 5025 5045 0 class=trf,trf 4988 5008 0 class=trf,trf 5284 5304 0 class=trf,trf 5210 5230 0 class=trf,trf 4877 4897 0 class=trf,trf 4766 4786 0 class=trf,trf 4840 4860 0 class=trf,trf 4655 4675 0 class=trf} |
sblock3014 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 13 30 | 24 5 | 5arm 3arm | 50 455 | nd nd | 0.43 0.45 | 3 4 | 5 | 2 | 0 | 17 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------GGGGUUG----------------------------------------------------------- | 2 | novel | |
| seed | --------------GGGGUUG------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| --------------------------------------------------TGGGGTTGGTAACAATGGAGC---------------------------------------------- | 21 | 2 | - | |
| -------------TGGGGTTGGTAACAATGGAGC----------------------------------------------------------------------------------- | 21 | 2 | - | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA------------------------------ | 20 | - | 1 | |
| rat | ctgcaggagatggTGGGGTTGGTAACAATGGAGCagactgcaggagatggTGGGGTTGGTAACAATGGAGCAGACTGCAGGAGATGAtggggttagtaataatggagcagactgcag | |||
| ********************************************************************************************************************* | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((...........((((.((((..((...((..((((((......((...((((....))))...))...))))))....)).))..)))).))))...........)))))) | 0.530 -28.85 | ||
| rat | chromosome:11:81736723:81736839:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 5987 6007 0 class=trf,trf 6040 6061 0 class=trf,trf 6024 6044 0 class=trf,trf 5950 5970 0 class=trf,trf 6077 6098 0 class=trf,trf 5839 5859 0 class=trf,trf 5913 5933 0 class=trf,trf 5876 5896 0 class=trf} |
sblock3017 [novel_multiarm_DicerNOK_Multihit_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.138 | no | no | 0.52/0.55 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 4 1 | 0 0 | 1 1 | 0 0 | 13 0 | 1 20 | 5arm 3arm | 50 455 | nd nd | 0.43 0.68 | 3 7 | 5 | 2 | -31 | 0 |
| reads | miRBase family seed | |||
| seed | --------------GGGGUUG------------------------------------------------------------------ | 2 | novel | |
| seed | ---------------------------------------------------GGGGUUG----------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------AGCAGAC------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T4S1 | |||
| --------------------------------------------------TGGGGTTGGTAACAATGGAGC---------------- | 21 | 2 | - | |
| -------------TGGGGTTGGTAACAATGGAGC----------------------------------------------------- | 21 | 2 | - | |
| -------------------------------------------------------------------GAGCAGACTGCAGGAGATGA | 20 | - | 1 | |
| rat | ctgcaggagatggTGGGGTTGGTAACAATGGAGCagagtgcaggagatgaTGGGGTTGGTAACAATGGAGCAGACTGCAGGAGATGA | |||
| *************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000029255 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | ((((((...........((((.((((..((...((............)).))..)))).))))...........))))))....... | 0.480 -15.75 | ||
| rat | chromosome:11:81738488:81738574:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## Same_strand|Intronic_coding|ENSRNOT00000029255|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: trf 6834 6854 0 class=trf,trf 6727 6747 0 class=trf,trf 7574 7594 0 class=trf,trf 7352 7372 0 class=trf,trf 7130 7150 0 class=trf,trf 7389 7409 0 class=trf,trf 6871 6891 0 class=trf,trf 6945 6965 0 class=trf,trf 7775 7796 0 class=trf,trf 6982 7002 0 class=trf,trf 6690 6710 0 class=trf,trf 7463 7483 0 class=trf,trf 7685 7705 0 class=trf,trf 7648 7668 0 class=trf,trf 7611 7631 0 class=trf,trf 7278 7298 0 class=trf,trf 7627 7648 0 class=trf,trf 7537 7557 0 class=trf,trf 6797 6817 0 class=trf,trf 7056 7076 0 class=trf,trf 7167 7187 0 class=trf,trf 7019 7039 0 class=trf,trf 7426 7446 0 class=trf,trf 7759 7779 0 class=trf,trf 7315 7335 0 class=trf,trf 7500 7520 0 class=trf,trf 7241 7261 0 class=trf,trf 7204 7224 0 class=trf,trf 7722 7742 0 class=trf,trf 7093 7113 0 class=trf,trf 6760 6780 0 class=trf} |
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