miR-Intess: classification

other hairpins

novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH (16 loci)

block1036788 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.009	no	no	0.36/0.36	22/22/1.00	0.0	0.0	1	0	1	0	4	-1	5arm_loop	1	nd	0.36	3	1	1	na	na

		reads	miRBase family seed
seed	-----AAUGUGU-------------------------------------------	1	novel
		len	cloning frequencies
			T2S1
	----TAATGTGTTGTGTAAGCACACA-----------------------------	22	1
rat	ttatTAATGTGTTGTGTAAGCACACAttatgtgtgcattatgtgcatgagtgtaa
	*******************************************************
	-----------------------------------------------------------------	ENSRNOT00000014800 ENSRNOG00000025539 RGD1311340_predicted
rat	........((((...((((((((((.....)))))).))))..))))........	0.730 -13.50

rat

chromosome:1:220088034:220088088:1

block1390633 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.008	no	no	0.15/0.15	20/20/1.00	0.0	0.0	1	0	1	0	3	-2	5arm_loop	3	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	----UUUUUUU------------------------------------	1	novel
		len	cloning frequencies
			T3S1
	---TTTTTTTTGCAAAGAAATAA------------------------	20	1
rat	gggTTTTTTTTGCAAAGAAATAAatgtatctttgtgttttagaatcc
	***********************************************
rat	(((((((...((((((((.((....)).))))))))....)))))))	1.000 -11.50

rat

chromosome:3:90991128:90991174:-1

intergenic ## {Repeats: dust 90991164 90991171 0 class=dust}

block1405809 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.002	no	no	0.24/0.24	21/21/1.00	0.0	0.0	1	0	1	0	1	-3	3arm_loop	1	nd	0.33	2	1	1	na	na

		reads	miRBase family seed
seed	-----------------------AAGUUGG--------------	1	novel
		len	cloning frequencies
			T1S1
	----------------------TAAGTTGGTTTTGTTTGTTTT-	21	1
rat	gagacaaatgaaaaataaaacaTAAGTTGGTTTTGTTTGTTTTg
	********************************************
	------------------------------------------------------	ENSRNOT00000051184 ENSRNOG00000004810 Plcb1
	------------------------------------------------------	ENSRNOT00000006389 ENSRNOG00000004810 Plcb1
rat	((((((((..(((.....(((....)))..)))..)))))))).	1.000 -9.90

rat

chromosome:3:123233300:123233343:-1

Opposite_strand|Intronic_coding|ENSRNOT00000006389|ENSRNOG00000004810 ## ENSRNOG00000004810|protein_coding|Plcb1|1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-1 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C- beta-1) (PLC-beta-1) (PLC-I) (PLC-154). [Source:UniProtKB/Swiss-Prot;Acc:P10687] ## {Repeats: dust 123233301 123233314 0 class=dust}

block1617012 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.010	no	no	0.50/0.50	20/20/1.00	0.0	0.0	1	0	1	0	0	-1	5arm_loop	2	nd	0.35	3	1	1	na	na

		reads	miRBase family seed
seed	-UGUCCUC------------------------------------------	1	novel
		len	cloning frequencies
			T4S2
	CTGTCCTCCTAGTAGACAGT------------------------------	20	1
rat	CTGTCCTCCTAGTAGACAGTatctcacaacactcctgtcctagtagacag
	**************************************************
rat	(((((...((((..(((((...............)))))))))..)))))	1.000 -12.06

rat

chromosome:4:5743648:5743697:1

intergenic ## {Repeats: trf 3705 3725 0 class=trf,trf 3674 3694 0 class=trf}

block1772551 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	0	-2	3arm_loop	1	nd	0.38	3	1	1	na	na

		reads	miRBase family seed
seed	-------------------------ACUUCGG--------------	1	novel
		len	cloning frequencies
			T3S2
	------------------------AACTTCGGTCTGTTCTTGACTC	22	1
rat	tgatgttgggaactagaataaggaAACTTCGGTCTGTTCTTGACTC
	**********************************************
	--------------------------------------------------------	ENSRNOT00000010013 ENSRNOG00000007410 Dab1
	--------------------------------------------------------	ENSRNOT00000009977 ENSRNOG00000007410 Dab1
rat	....((..(((((.(((..(((....)))...))))))))..))..	1.000 -16.90

rat

chromosome:5:125658092:125658137:-1

block2196525 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.55/0.57	20/21/1.00	0.5	1.0	2	0	1	0	2	-4	3arm_loop	1	nd	0.40	3	2	1	na	na

		reads	miRBase family seed
seed	---------------------------CAAGUGC----------------	1	novel
seed	----------------------------AAGUGCA---------------	1	novel
		len	cloning frequencies
			T1S1
	---------------------------CAAGTGCACACACACACCCCA--	21	1
	--------------------------TCAAGTGCACACACACACCC----	20	1
rat	gtgcatgtgcttgtgtgcacacacatTCAAGTGCACACACACACCCCAac
	**************************************************
	------------------------------------------------------------	ENSRNOT00000010414 ENSRNOG00000007875 NP_001101551.1
rat	......(((..(((((((((..........)))))))))..)))......	0.990 -16.90

rat

chromosome:7:26534729:26534778:1

block2341801 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.43/0.43	21/21/1.00	0.0	0.0	1	0	1	0	1	-4	3arm_loop	2	nd	0.33	3	1	1	na	na

		reads	miRBase family seed
seed	--------------------UCAAAGU--------------	1	novel
		len	cloning frequencies
			T4S1
	-------------------CTCAAAGTTGAAACTCTGGAG-	21	1
rat	gcaccagagtcacacttccCTCAAAGTTGAAACTCTGGAGc
	*****************************************
rat	((.(((((((..(((((......))).))..))))))).))	1.000 -13.80

rat

chromosome:8:94949041:94949081:-1

intergenic

block2420410 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.005	no	no	0.52/0.55	20/21/1.00	1.0	1.3	3	0	1	0	1	-1	5arm_loop	1	nd	0.38	3	3	1	na	na

		reads	miRBase family seed
seed	--GAGAACA--------------------------------------------	2	novel
seed	-----AACACGG-----------------------------------------	1	novel
		len	cloning frequencies
			T5S1
	----GAACACGGATGGGAAGCAGT-----------------------------	20	1
	-TGAGAACACGGATGGGAAGCA-------------------------------	21	1
	-TGAGAACACGGATGGGAAGC--------------------------------	20	1
rat	cTGAGAACACGGATGGGAAGCAGTaagcctctgagcccagatgagctctcaga
	*****************************************************
rat	((((((...((..((((...(((.......)))..))))..))...)))))).	1.000 -19.00

rat

chromosome:8:72090384:72090436:1

intergenic

block2608721 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.001	no	no	0.65/0.65	23/23/1.00	0.0	0.0	1	0	1	0	0	-2	5arm_loop	1	nd	0.39	3	1	1	na	na

		reads	miRBase family seed
seed	-GUGCGUG--------------------------------------	1	novel
		len	cloning frequencies
			T2S2
	TGTGCGTGTGTGCGTGCACGCGA-----------------------	23	1
rat	TGTGCGTGTGTGCGTGCACGCGAgagcacacacacacacagacaca
	**********************************************
rat	.(((..((((((.(((...((....))...))).))))))..))).	1.000 -20.20

rat

chromosome:9:62103730:62103775:1

intergenic ## {Repeats: trf 1 17 0 class=trf}

novel_Multihit_5varHIGH (15 loci)

block353635 [novel_Multihit_5varHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.572	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	7	21	5arm	29	nd	0.25	2	2	2	na	na

		reads	miRBase family seed
seed	--------CUUGAGG-------------------------------------------------------------------------------------------------------	1	miR-327
seed	------------AGGAUGU---------------------------------------------------------------------------------------------------	1	novel
		len	cloning frequencies
			T3S1	T4S1
	-------CCTTGAGGATGTTCCCCAACTCT----------------------------------------------------------------------------------------	23	1	-
	-----------GAGGATGTTCCCCAACTCTG---------------------------------------------------------------------------------------	20	-	1
rat	cctacctCCTTGAGGATGTTCCCCAACTCTGcccacgactcaccaagccttctccagaatgatttcctccttcctgtttcactagagtgggggtcagcttccctctgacctggtgcgg
	**********************************************************************************************************************
	------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<	ENSRNOT00000049147 ENSRNOG00000032644
rat	((((((.....((((.((..((((.((((((.....(((...........((........)).............)))....))))))))))..)).....))))......)))).))	0.410 -25.45