other hairpins
novel_Multihit_5varHIGH (15 loci)
block965131 [novel_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.482 | no | no | 0.35/0.38 | 19/24/0.89 | 4.0 | 1.9 | 9 | 0 | 3 | 0 | 10 | 8 | 5arm | 39 | nd | 0.27 | 2 | 9 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | 3 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | 1 | - | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTATTCCTAtttagtcctagagggaaatcagcaagggtagagaatgggactgtaactggacaaagctgct | ||||
| ****************************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | ||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059908 ENSRNOG00000030267 RGD1561185_predicted | ||||
| rat | ((.((.......((((((.(((..((((..((((..((((......(((.....)))........))))...))))..))))...)))))))))...)).)) | 0.970 -22.04 | |||
| rat | chromosome:1:52748148:52748249:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000059908|ENSRNOG00000030267 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| |
block843947 [novel_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.306 | no | no | 0.35/0.38 | 19/24/0.89 | 4.0 | 1.9 | 9 | 0 | 3 | 0 | 18 | 8 | 5arm | 39 | nd | 0.18 | 1 | 9 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------GUCUAUG---------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -------------------GUGUCUA------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ------------------------------GUGUUCA------------------------------------------------------------------------------- | 2 | miR-124* | ||
| seed | ---------------------------GUUGUGU---------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| --------------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------------- | 22 | - | 3 | - | |
| ------------------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------------- | 24 | - | 3 | - | |
| --------------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------------- | 20 | - | - | 1 | |
| -----------------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------------- | 20 | - | 1 | - | |
| -----------------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------------- | 19 | 1 | - | - | |
| rat | ggaagatgaggagaacaaTGTGTCTATGTTGTGTTCACTTCTATTCCTAtttagtcctagagggaaatcagcaagggtagagaaggggaccgtaactggacaaagctgctgagcct | ||||
| ******************************************************************************************************************** | |||||
| rat | ((......((.((.......((((((.((((((.((.(((((..((((......(((.....)))........))))...)))))..)).))))))))))))...)).))...)). | 0.850 -26.64 | |||
| rat | chromosome:1:50003380:50003495:-1 | intergenic |
block844631 [novel_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.607 | no | no | 0.35/0.38 | 19/24/0.89 | 4.0 | 1.9 | 9 | 0 | 3 | 0 | 10 | 8 | 5arm | 39 | nd | 0.18 | 2 | 9 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | 3 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | 1 | - | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTATTCCTAtttagtcctagagggaaatcagcaagggtagagaatgggaccgtaactggacaaagctgct | ||||
| ****************************************************************************************************** | |||||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||||
| rat | ((.((.......((((((.(((((((((..((((..((((......(((.....)))........))))...))))..)))).)))))))))))...)).)) | 0.980 -21.64 | |||
| rat | chromosome:1:50293333:50293434:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block844897 [novel_Multihit_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.482 | no | no | 0.35/0.38 | 19/24/0.89 | 4.0 | 1.9 | 9 | 0 | 3 | 0 | 10 | 8 | 5arm | 39 | nd | 0.27 | 2 | 9 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------GUCUAUG---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | -----------GUGUCUA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ----------------------GUGUUCA------------------------------------------------------------------------- | 2 | miR-124* | ||
| seed | -------------------GUUGUGU---------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S2 | T5S1 | T5S2 | |||
| ----------TGTGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 24 | - | 3 | - | |
| ------------TGTCTATGTTGTGTTCACTTCT-------------------------------------------------------------------- | 22 | - | 3 | - | |
| ---------------------TGTGTTCACTTCTATTCCTA------------------------------------------------------------- | 20 | - | 1 | - | |
| ------------------TGTTGTGTTCACTTCTATTC---------------------------------------------------------------- | 20 | - | - | 1 | |
| ---------------------TGTGTTCACTTCTATTCCT-------------------------------------------------------------- | 19 | 1 | - | - | |
| rat | aggagaacaaTGTGTCTATGTTGTGTTCACTTCTATTCCTAtttagtcctagagggaaatcagcaagggtagagaatgggactgtaactggacaaagctgct | ||||
| ****************************************************************************************************** | |||||
| rat | ((.((.......((((((.(((..((((..((((..((((......(((.....)))........))))...))))..))))...)))))))))...)).)) | 0.970 -22.04 | |||
| rat | chromosome:1:50356258:50356359:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (15 loci)
block194077 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.655 | no | no | 0.29/0.58 | 19/24/0.76 | 0.0 1.1 0.0 | 0.5 0.0 0.0 | 2 18 1 | 0 0 0 | 2 2 1 | 0 0 0 | 18 17 7 | -9 -19 -2 | 5arm_loop 3arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.58 0.61 0.47 | 9 12 5 | 29 | 3 | 0 | 2 |
| reads | miRBase family seed | ||||
| seed | --------------------------AGAAAAA-------------------------------- | 13 | novel | ||
| seed | ------------------------------AAACCAC---------------------------- | 6 | novel | ||
| seed | -------------------------------AACCACA--------------------------- | 3 | novel | ||
| seed | ----------------------------AAAAACC------------------------------ | 3 | novel | ||
| seed | -------------------GGGCCUU--------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------GUUUACA------------------ | 1 | novel | ||
| seed | -------------------------UAGAAAA--------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T3S2 | T5S1 | |||
| -------------------------TAGAAAAACCACAATGTTTACAG----------------- | 23 | - | - | 13 | |
| -----------------------------AAAACCACAATGTTTACAG----------------- | 19 | - | - | 5 | |
| ------------------------------AAACCACAATGTTTACAGCCCTGC----------- | 24 | - | - | 2 | |
| ---------------------------GAAAAACCACAATGTTTACAG----------------- | 21 | - | - | 2 | |
| ------------------------TTAGAAAAACCACAATGTTTACAG----------------- | 24 | - | - | 1 | |
| ------------------------------AAACCACAATGTTTACAGCCCTG------------ | 23 | - | - | 1 | |
| ------------------TGGGCCTTAGAAAAACCAC---------------------------- | 19 | - | 1 | - | |
| ---------------------------GAAAAACCACAATGTTTACAGCCC-------------- | 24 | - | - | 1 | |
| ---------------------------------------TGTTTACAGCCCTGCCCTG------- | 19 | - | - | 1 | |
| -----------------------------AAAACCACAATGTTTACAGCCC-------------- | 22 | 1 | - | - | |
| ------------------TGGGCCTTAGAAAAACCACA--------------------------- | 20 | - | - | 1 | |
| rat | caaagccatgtaccaagttgggcctTAGAAAAACCACAATGTTTACAGccctgccctgaagcttt | ||||
| ***************************************************************** | |||||
| rat | .(((((..........((.((((..((((............))))..)))).))......))))) | 0.870 -8.69 | |||
| rat | chromosome:12:27563911:27563975:-1 | intergenic |
block1600341 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.596 | no | no | 0.30/0.56 | 19/25/0.79 | 0.0 0.0 5.0 0.0 | 1.0 0.0 4.3 0.0 | 2 11 6 1 | 0 0 0 0 | 2 1 5 1 | 0 0 0 0 | 10 16 19 7 | 0 -5 -13 -6 | 5arm 5arm_loop 3arm_loop 3arm_loop | 1 1 1 1 | nd nd nd nd | 0.37 0.55 0.75 0.40 | 4 6 12 5 | 28 | 6 | 0 | -8 |
| reads | miRBase family seed | |||||||
| seed | -----------------AGAGCUA---------------------------------------------------- | 11 | novel | |||||
| seed | --------------------------------------ACCACAU------------------------------- | 6 | novel | |||||
| seed | ------------------------------GAUACUA--------------------------------------- | 3 | novel | |||||
| seed | -----------------------ACAAAGU---------------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------ACUAUAC------------------------------------ | 2 | novel | |||||
| seed | -----------ACUCAUA---------------------------------------------------------- | 2 | novel | |||||
| seed | ---------------------------------------------GCCGCCA------------------------ | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| ----------------TAGAGCTACAAAGTGATACT---------------------------------------- | 20 | - | - | - | - | - | 11 | |
| -------------------------------------TACCACATGCCGCCAGTTCA------------------- | 20 | - | 1 | - | 1 | - | 4 | |
| -----------------------------TGATACTATACCACATGCC---------------------------- | 19 | 1 | - | - | - | 1 | 1 | |
| ----------------------TACAAAGTGATACTATACCACA-------------------------------- | 22 | - | - | - | - | - | 2 | |
| --------------------------------TACTATACCACATGCCGCCAGTTCA------------------- | 25 | - | - | - | - | - | 1 | |
| --------------------------------------------TGCCGCCAGTTCATAGCTAGGGTTC------- | 25 | - | - | - | - | - | 1 | |
| ----------------------TACAAAGTGATACTATACCACAT------------------------------- | 23 | - | - | - | - | - | 1 | |
| ----------TACTCATAGAGCTACAAAGTG--------------------------------------------- | 21 | - | - | 1 | - | - | - | |
| --------------------------------TACTATACCACATGCCGCCAGT---------------------- | 22 | 1 | - | - | - | - | - | |
| ----------TACTCATAGAGCTACAAAG----------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | gagatgtttatactcaTAGAGCTACAAAGTGATACTaTACCACATGCCGCCAGTTCAtagctagggttcatcctct | |||||||
| **************************************************************************** | ||||||||
| rat | ((((((.....((((....(((((..((.((...................)).))..))))).)))).)))).)). | 0.740 -11.61 | ||||||
| rat | chromosome:4:164234707:164234782:-1 | intergenic |
sblock10073 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.370 | no | no | 0.36/0.60 | 19/25/0.70 | 0.0 0.0 4.3 0.0 | 0.0 0.0 3.3 0.0 | 1 2 6 1 | 0 0 0 0 | 1 1 3 1 | 0 0 0 0 | 14 29 33 11 | 16 2 -21 26 | 5arm 5arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.44 0.33 0.45 0.35 | 5 4 5 5 | 10 | 3 | 0 | 4 |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------CACAGAU------------------------------------------------------ | 3 | novel | ||
| seed | ------------------------------CCUCUGA--------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------------------------GAGGAUG----------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------CAGAUUU---------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------CCUCACA--------------------------------------------------------- | 1 | novel | ||
| seed | ---------------GGUGUGA------------------------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------ACGCAGC--------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -----------------------------TCCTCTGAGATAATTGTTGTTCCT----------------------------------------------------------------- | 24 | - | - | 2 | |
| --------------------------------------------------------TCACAGATTTACGCAGCAG------------------------------------------- | 19 | 1 | - | 1 | |
| ----------------------------------------------------------ACAGATTTACGCAGCAGGCCCTTC------------------------------------ | 24 | - | - | 1 | |
| --------------TGGTGTGATTTTTTTTCCTCTGAGA------------------------------------------------------------------------------- | 25 | - | - | 1 | |
| -----------------------------------------------------------------TACGCAGCAGGCCCTTCTCT--------------------------------- | 20 | - | - | 1 | |
| ---------------------------------------------------------------------------------------TGAGGATGATCAAGTGTGGT----------- | 20 | - | - | 1 | |
| --------------------------------------------------------TCACAGATTTACGCAGCAGGCCC--------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------TCCTCACAGATTTACGCAGCAGG------------------------------------------ | 23 | - | 1 | - | |
| rat | gactctttggactcTGGTGTGATTTTTTTTCCTCTGAGATAATTGTTGTTCCTTCCTCACAGATTTACGCAGCAGGCCCTTCTCTatTGAGGATGATCAAGTGTGGTagacaggagtt | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((.(((.(((......(((((.....(((((.((((...(((((((....((......)).....))))))).....))))....))))).))))).....)))...)))))))) | 0.990 -28.20 | |||
| rat | chromosome:6:122554874:122554991:-1 | intergenic ## {Repeats: dust 122554962 122554963 0 class=dust,dust 122554962 122554969 0 class=dust} |
sblock10108 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.146 | no | no | 0.35/0.58 | 18/23/0.73 | 0.0 0.0 1.1 2.0 | 0.0 0.0 1.0 0.5 | 1 1 7 2 | 0 0 0 0 | 1 1 1 2 | 0 0 0 0 | 19 33 34 11 | 8 -1 -19 9 | 5arm 5arm_loop 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.44 0.60 0.45 | 5 5 10 5 | 11 | 3 | 0 | -28 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------CAGAAAA---------------------------------------------- | 4 | novel | ||
| seed | --------------------------------------------------CCCAGAA------------------------------------------------ | 3 | novel | ||
| seed | --------------------UUGAGCA------------------------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------GGUACAU---------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------AUCACAC---------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------AGACAUC-------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T5S1 | |||
| ---------------------------------------------------CCAGAAAATATCTCTTTCCA---------------------------------- | 20 | - | - | 3 | |
| -------------------------------------------------GCCCAGAAAATATCTCTTTC------------------------------------ | 20 | - | - | 3 | |
| -------------------TTTGAGCAAGGTGATGGTACATG--------------------------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------------------------TAGACATCACACTGGTCACCCC------------ | 22 | - | 1 | - | |
| ---------------------------------------------------CCAGAAAATATCTCTTTCC----------------------------------- | 19 | - | - | 1 | |
| ---------------------------------TGGTACATGTGGGTGAGC------------------------------------------------------ | 18 | 1 | - | - | |
| ---------------------------------------------------------------------------CATCACACTGGTCACCCCA----------- | 19 | - | - | 1 | |
| rat | tccttggtgggagcgagtaTTTGAGCAAGGTGATGGTACATGTGGGTGAGCCCAGAAAATATCTCTTTCCATAGACATCACACTGGTCACCCCAagcaaccaggg | ||||
| ********************************************************************************************************* | |||||
| rat | .(((((((....((.......(((.((..((((((.....((((((.(((............)))..))))))..))))))..)).)))......)).))))))) | 0.730 -31.32 | |||
| rat | chromosome:6:122566166:122566270:-1 | intergenic |
sblock3048 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.427 | no | no | 0.42/0.56 | 19/25/0.72 | 1.0 2.2 0.0 0.0 | 1.5 2.0 0.0 0.0 | 2 10 1 7 | 0 0 0 0 | 2 2 1 3 | 0 0 0 0 | 14 23 34 27 | 2 -14 -15 0 | 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.40 0.48 0.53 0.43 | 4 4 4 4 | 25 | 4 | -2 | -4 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------GGAAGAU---------------------------------------- | 10 | novel | |||
| seed | ------------------------------CAAGACC----------------------------------------------------- | 3 | novel | |||
| seed | -----------------------------UCAAGAC------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------------------------UGGAAGA----------------------------------------- | 2 | novel | |||
| seed | --------------------------AAAUCAA--------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------AAGACCA---------------------------------------------------- | 1 | novel | |||
| seed | ---------------GCAACAC-------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------CCACAAG------------------------------------------------ | 1 | novel | |||
| seed | ------------------------GGAAAUC----------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------GAAAUCA---------------------------------------------------------- | 1 | novel | |||
| seed | -----------------AACACGU------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S1 | |||
| ------------------------------------------TGGAAGATGGAGCCACAGTGA--------------------------- | 21 | 1 | 1 | - | 7 | |
| -----------------------------TCAAGACCACAAGTGGAAGA----------------------------------------- | 20 | - | - | - | 3 | |
| -----------------------------------------GTGGAAGATGGAGCCACAGTGATCC------------------------ | 25 | - | - | - | 2 | |
| ------------------------GGAAATCAAGACCACAAGTG---------------------------------------------- | 20 | - | - | - | 1 | |
| --------------TGCAACACGTGGAAATCAA--------------------------------------------------------- | 19 | 1 | - | - | - | |
| ------------------------------CAAGACCACAAGTGGAAGA----------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------GAAATCAAGACCACAAGTGGAAGA----------------------------------------- | 24 | - | - | - | 1 | |
| ----------------------------ATCAAGACCACAAGTGGAAGATG--------------------------------------- | 23 | - | - | - | 1 | |
| -----------------------TGGAAATCAAGACCACAAGTG---------------------------------------------- | 21 | - | - | - | 1 | |
| ----------------------------ATCAAGACCACAAGTGGAAGATGG-------------------------------------- | 24 | - | - | 1 | - | |
| ----------------CAACACGTGGAAATCAAGAC------------------------------------------------------ | 20 | - | - | - | 1 | |
| ------------------------------------------TGGAAGATGGAGCCACAGT----------------------------- | 19 | - | - | - | 1 | |
| ----------------------------------ACCACAAGTGGAAGATGGA------------------------------------- | 19 | - | - | - | 1 | |
| -------------------------GAAATCAAGACCACAAGTG---------------------------------------------- | 19 | - | - | - | 1 | |
| rat | aagtcccacaggcgtgcaacacgtggaaaTCAAGACCACAAGTGGAAGATGGAGCCACAGTGAtccaccatgcttcttggccttggcttc | |||||
| ****************************************************************************************** | ||||||
| rat | ((((((((.(((((((...(((((((..(((....(((....)))..)))....)))).)))......)))))))..)))....))))). | 0.620 -22.60 | ||||
| rat | chromosome:11:84948929:84949018:-1 | intergenic |
sblock3346 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.43/0.57 | 18/25/0.86 | 2.1 0.0 | 1.9 0.0 | 15 8 | 0 0 | 3 3 | 0 0 | 38 27 | -11 5 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.35 0.35 | 4 3 | 43 | 4 | 7 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------GGUAUCG--------------------------------------- | 15 | novel | |||
| seed | ---------------------------------------GGUAGGU----------------------------------------------------------------- | 11 | novel | |||
| seed | -----------------------------------------------------------GAGCAUG--------------------------------------------- | 8 | novel | |||
| seed | -----------------------------------------------CAGAGUU--------------------------------------------------------- | 6 | novel | |||
| seed | --------------------------------------UGGUAGG------------------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------------------------AGGUUCA-------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAG--------------------------- | 20 | 1 | - | 8 | 1 | |
| --------------------------------------TGGTAGGTTCAGAGTTCACATGAG------------------------------------------------- | 24 | 2 | - | 6 | - | |
| ----------------------------------------------TCAGAGTTCACATGAGCATG--------------------------------------------- | 20 | 1 | - | 4 | - | |
| --------------------------------------TGGTAGGTTCAGAGTTCACA----------------------------------------------------- | 20 | - | - | 3 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGT--------------------------------- | 20 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGGA------------------------- | 22 | - | - | 2 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGA----------------------------------- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGG-------------------------- | 21 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGGAG------------------------ | 23 | 1 | - | - | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTTCCCA---------------------------- | 25 | - | - | 1 | - | |
| -----------------------------------------TAGGTTCAGAGTTCACATGAG------------------------------------------------- | 21 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTTCC------------------------------ | 23 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTT-------------------------------- | 21 | - | - | 1 | - | |
| -------------------------------------TTGGTAGGTTCAGAGTTCACA----------------------------------------------------- | 21 | - | 1 | - | - | |
| -------------------------------------TTGGTAGGTTCAGAGTTCACATGAG------------------------------------------------- | 25 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAG---------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------TCAGAGTTCACATGAGCA----------------------------------------------- | 18 | - | - | 1 | - | |
| rat | aggaaagacatggggcaggcaggggtggtgggggagctTGGTAGGTTCAGAGTTCACATGAGCATGGTATCGTGGAGTTCCCAGgaggaactgtcgtcagccctgtggtcc | |||||
| *************************************************************************************************************** | ||||||
| rat | .(((....((((((((.(((((.........((((((((....((((((..((((....)))).))).)))...))))))))........)))))....)))))))).))) | 0.950 -41.13 | ||||
| rat | chromosome:12:44299073:44299183:-1 | intergenic |
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