other hairpins
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH (15 loci)
sblock3606 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.019 | no | no | 0.43/0.57 | 18/25/0.86 | 2.1 0.0 | 1.9 0.0 | 15 8 | 0 0 | 3 3 | 0 0 | 38 27 | -11 5 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.35 0.35 | 4 3 | 43 | 4 | 7 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------------------------GGUAUCG--------------------------------------- | 15 | novel | |||
| seed | ---------------------------------------GGUAGGU----------------------------------------------------------------- | 11 | novel | |||
| seed | -----------------------------------------------------------GAGCAUG--------------------------------------------- | 8 | novel | |||
| seed | -----------------------------------------------CAGAGUU--------------------------------------------------------- | 6 | novel | |||
| seed | --------------------------------------UGGUAGG------------------------------------------------------------------ | 2 | novel | |||
| seed | ------------------------------------------AGGUUCA-------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAG--------------------------- | 20 | 1 | - | 8 | 1 | |
| --------------------------------------TGGTAGGTTCAGAGTTCACATGAG------------------------------------------------- | 24 | 2 | - | 6 | - | |
| ----------------------------------------------TCAGAGTTCACATGAGCATG--------------------------------------------- | 20 | 1 | - | 4 | - | |
| --------------------------------------TGGTAGGTTCAGAGTTCACA----------------------------------------------------- | 20 | - | - | 3 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGT--------------------------------- | 20 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGGA------------------------- | 22 | - | - | 2 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGA----------------------------------- | 18 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGG-------------------------- | 21 | - | - | 2 | - | |
| ----------------------------------------------------------------TGGTATCGTGGAGTTCCCAGGAG------------------------ | 23 | 1 | - | - | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTTCCCA---------------------------- | 25 | - | - | 1 | - | |
| -----------------------------------------TAGGTTCAGAGTTCACATGAG------------------------------------------------- | 21 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTTCC------------------------------ | 23 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAGTT-------------------------------- | 21 | - | - | 1 | - | |
| -------------------------------------TTGGTAGGTTCAGAGTTCACA----------------------------------------------------- | 21 | - | 1 | - | - | |
| -------------------------------------TTGGTAGGTTCAGAGTTCACATGAG------------------------------------------------- | 25 | - | - | 1 | - | |
| ----------------------------------------------------------TGAGCATGGTATCGTGGAG---------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------TCAGAGTTCACATGAGCA----------------------------------------------- | 18 | - | - | 1 | - | |
| rat | aggaaagacatggggcaggcaggggtggtgggggagctTGGTAGGTTCAGAGTTCACATGAGCATGGTATCGTGGAGTTCCCAGgaggaactgtcgtcagccctgtggtcc | |||||
| *************************************************************************************************************** | ||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | |||||
| rat | .(((....((((((((.(((((.........((((((((....((((((..((((....)))).))).)))...))))))))........)))))....)))))))).))) | 0.950 -41.13 | ||||
| rat | chromosome:12:43043934:43044044:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
sblock6736 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.310 | no | no | 0.40/0.68 | 18/26/0.74 | 2.2 2.0 0.0 0.0 | 0.0 4.0 0.0 1.8 | 11 10 1 9 | 0 0 0 0 | 3 3 1 2 | 0 0 0 0 | 24 35 22 4 | 5 -12 9 22 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.38 0.45 0.42 0.35 | 2 3 4 5 | 43 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------------------------------------------CACUGCC-------------------- | 10 | miR-324 | |||
| seed | ------------------------------------AGAGUAU--------------------------------------------------------------------- | 6 | novel | |||
| seed | --------------------------CCGUCGC------------------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------UCCGUCG-------------------------------------------------------------------------------- | 3 | novel | |||
| seed | --------------------------------------AGUAUAC------------------------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------ACAGAUC-------------------------------------------------------------- | 2 | novel | |||
| seed | -------------------------------------GAGUAUA-------------------------------------------------------------------- | 2 | novel | |||
| seed | -----------------------------UCGCUCU---------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------------CGCUCUA--------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------------------------------------AGGUCCC------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------GUCGCUC----------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------------CAGUCCC---------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------GCCUAUC---------------- | 1 | novel | |||
| seed | ----------------------------------CUAGAGU----------------------------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------------AUCAGUC------------ | 1 | novel | |||
| seed | ---------------------------------------------------------------------------------------CUGCCUA------------------ | 1 | novel | |||
| seed | ------------------------------------------------------------------------GCUCCUC--------------------------------- | 1 | novel | |||
| seed | ----------------------------------------UAUACAG----------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------AUACAGA---------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S1 | T5S1 | |||
| ------------------------------------------------------------------------------------GCACTGCCTATCAGTCCCTC-------- | 20 | - | 1 | - | 4 | |
| -----------------------------------TAGAGTATACAGATCAGGTC--------------------------------------------------------- | 20 | - | - | - | 4 | |
| -------------------------TCCGTCGCTCTAGAGTATACAGA---------------------------------------------------------------- | 23 | - | 1 | - | 2 | |
| ------------------------------------------------------------------------------------GCACTGCCTATCAGTCCCTCCAAG---- | 24 | - | - | - | 3 | |
| ------------------------TTCCGTCGCTCTAGAGTATACAGA---------------------------------------------------------------- | 24 | - | - | 1 | 2 | |
| -------------------------------------GAGTATACAGATCAGGTCCCC------------------------------------------------------ | 21 | - | - | - | 2 | |
| ------------------------------------------TACAGATCAGGTCCCCACTCCCT----------------------------------------------- | 23 | - | - | - | 2 | |
| ------------------------------------AGAGTATACAGATCAGGTCCCCACTC-------------------------------------------------- | 26 | - | - | - | 2 | |
| ----------------------------GTCGCTCTAGAGTATACAGA---------------------------------------------------------------- | 20 | - | - | - | 2 | |
| ------------------------------------------------------------------------------------GCACTGCCTATCAGTCCCTCCA------ | 22 | - | - | - | 2 | |
| -----------------------------TCGCTCTAGAGTATACAGA---------------------------------------------------------------- | 19 | - | - | - | 2 | |
| ---------------------------CGTCGCTCTAGAGTATACAGA---------------------------------------------------------------- | 21 | - | - | - | 1 | |
| -----------------------------------TAGAGTATACAGATCAGGTCCCCAC---------------------------------------------------- | 25 | - | - | - | 1 | |
| -------------------------------------------------CAGGTCCCCACTCCCTGTCCCT----------------------------------------- | 22 | - | - | - | 1 | |
| -------------------------------------GAGTATACAGATCAGGTCC-------------------------------------------------------- | 19 | 1 | - | - | - | |
| ----------------------------------------TATACAGATCAGGTCCCCAC---------------------------------------------------- | 20 | - | 1 | - | - | |
| --------------------------------------------------------------------------------------------TATCAGTCCCTCCAAGCT-- | 18 | - | 1 | - | - | |
| ---------------------------------------GTATACAGATCAGGTCCCCACTC-------------------------------------------------- | 23 | - | - | - | 1 | |
| -----------------------------------TAGAGTATACAGATCAGGTCCCC------------------------------------------------------ | 23 | - | - | - | 1 | |
| ---------------------------------TCTAGAGTATACAGATCAGGTCCCC------------------------------------------------------ | 25 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------TGCCTATCAGTCCCTCCAAG---- | 20 | - | - | - | 1 | |
| --------------------------------------------------------------------------------------ACTGCCTATCAGTCCCTCC------- | 19 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------------TCAGTCCCTCCAAGCTAG | 18 | - | - | - | 1 | |
| -----------------------------------------------------------------------AGCTCCTCACTGGGCACTG---------------------- | 19 | - | 1 | - | - | |
| rat | ctggcaagaccaagagggaaaggcTTCCGTCGCTCTAGAGTATACAGATCAGGTCCCCACTCCCTgtccctagctcctcactggGCACTGCCTATCAGTCCCTCCAAGctag | |||||
| **************************************************************************************************************** | ||||||
| rat | (((((........((((((.((((....((.((((..(((..((..((.((((.........))))))..))....)))...)))))).)))).....))))))...))))) | 0.640 -29.30 | ||||
| rat | chromosome:20:5516867:5516978:-1 | intergenic |
sblock678 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.388 | no | no | 0.36/0.55 | 18/23/0.71 | 0.0 0.0 2.7 0.0 0.7 | 0.0 0.0 1.3 0.0 0.7 | 1 3 10 1 6 | 0 0 0 0 0 | 1 1 3 1 3 | 0 0 0 0 0 | 2 12 31 22 11 | 22 13 -11 -3 5 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.43 0.55 0.50 0.50 0.43 | 6 6 5 4 4 | 21 | 5 | -5 | 0 |
| reads | miRBase family seed | ||||||
| seed | --------------------------------------------------------GCCAGCA-------------------------- | 4 | novel | ||||
| seed | -------------------------------------AAUGCAU--------------------------------------------- | 4 | novel | ||||
| seed | ---------------------------------GGAUAAU------------------------------------------------- | 3 | novel | ||||
| seed | -------------GACCACA--------------------------------------------------------------------- | 3 | novel | ||||
| seed | --------------------------------------AUGCAUC-------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------------------CAGCAAU------------------------ | 2 | novel | ||||
| seed | ------------------------------------------------UGGAGCC---------------------------------- | 1 | novel | ||||
| seed | --------------------------------UGGAUAA-------------------------------------------------- | 1 | novel | ||||
| seed | ---AAGAGGA------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T4S1 | T5S1 | |||
| ------------TGACCACATGATGCCAGACA--------------------------------------------------------- | 20 | - | - | - | - | 3 | |
| --------------------------------TGGATAATGCATCTTTTGGAG------------------------------------ | 21 | - | - | - | - | 3 | |
| ---------------------------------------------------------CCAGCAATGATATCAATAC------------- | 19 | - | 1 | - | - | 1 | |
| -------------------------------------------------------TGCCAGCAATGATATCAATACC------------ | 22 | - | - | - | 2 | - | |
| ------------------------------------TAATGCATCTTTTGGAGCCT--------------------------------- | 20 | - | - | - | - | 2 | |
| -------------------------------------AATGCATCTTTTGGAGCC---------------------------------- | 18 | - | - | - | - | 2 | |
| -------------------------------------------------------TGCCAGCAATGATATCAATACCA----------- | 23 | - | - | - | - | 2 | |
| -----------------------------------------------TTGGAGCCTGCCAGCAATGA---------------------- | 20 | - | - | - | - | 1 | |
| ------------------------------------TAATGCATCTTTTGGAGC----------------------------------- | 18 | - | - | - | - | 1 | |
| --GAAGAGGACATGACCACATGA------------------------------------------------------------------ | 21 | - | - | - | - | 1 | |
| ------------------------------------TAATGCATCTTTTGGAGCC---------------------------------- | 19 | 1 | - | - | - | - | |
| -------------------------------ATGGATAATGCATCTTTTGGAG------------------------------------ | 22 | - | - | 1 | - | - | |
| rat | aaGAAGAGGACATGACCACATGATGCCAGACATGGATAATGCATCTTTTGGAGCCTGCCAGCAATGATATCAATACCAtgaacttgtct | ||||||
| ***************************************************************************************** | |||||||
| rat | .(((.(((..((((......(((((.((....(((.....((.((.....))))...)))....)).)))))....))))..))).))) | 0.690 -17.20 | |||||
| rat | chromosome:1:124838866:124838954:-1 | intergenic |
sblock687 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.631 | no | no | 0.31/0.45 | 18/26/0.73 | 3.9 0.0 | 4.8 0.0 | 10 1 | 0 0 | 5 1 | 0 0 | 14 5 | -8 22 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.32 0.54 | 4 4 | 11 | 5 | 15 | 15 |
| reads | miRBase family seed | ||||||
| seed | -------------------UGGCACA-------------------------------------------------------------------------------------- | 5 | novel | ||||
| seed | ----------------------CACAGAA----------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------------------------------------------GCUAUGA----------------------- | 1 | novel | ||||
| seed | -------------------------------CCUAUCC-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ------------------------------------CCUCUAC--------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------GUCUUGG------------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T5S1 | T5S2 | |||
| ------------------TTGGCACAGAAATCCTATCCTCT----------------------------------------------------------------------- | 23 | - | 1 | 1 | 2 | - | |
| --------------TGTCTTGGCACAGAAATCCT------------------------------------------------------------------------------ | 20 | - | - | - | 1 | - | |
| ------------------TTGGCACAGAAATCCTAT---------------------------------------------------------------------------- | 18 | - | - | - | 1 | - | |
| ---------------------------------------------------------------------------------TGCTATGATTAGGCTACTATTTCTTT----- | 26 | - | - | - | 1 | - | |
| -----------------------------------TCCTCTACACTTGAAAATAGACTC----------------------------------------------------- | 24 | 1 | - | - | - | - | |
| ---------------------GCACAGAAATCCTATCCTCTAC--------------------------------------------------------------------- | 22 | - | - | - | 1 | - | |
| ---------------------GCACAGAAATCCTATCCTCTACACT------------------------------------------------------------------ | 25 | - | - | - | - | 1 | |
| ------------------------------TCCTATCCTCTACACTTGAAAA------------------------------------------------------------ | 22 | - | - | - | 1 | - | |
| rat | tccaatccagatgtTGTCTTGGCACAGAAATCCTATCCTCTACACTTGAAAATAGACTCtttcgtgggaggggtggtcagcTGCTATGATTAGGCTACTATTTCTTTgtggg | ||||||
| **************************************************************************************************************** | |||||||
| rat | .(((....(((.((.((((...(((((....((..((((((.(((..((((........)))))))))))))..))....)))...))...)))).))....)))...))). | 0.660 -25.30 | |||||
| rat | chromosome:1:124842494:124842605:-1 | intergenic |
sblock7117 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.943 | no | no | 0.37/0.50 | 18/25/0.70 | 0.0 3.8 | 0.0 2.7 | 1 21 | 0 0 | 1 6 | 0 0 | 27 38 | 4 -16 | 5arm 3arm | 1 1 | nd nd | 0.55 0.45 | 6 5 | 44 | 6 | 0 | 1 |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------------UGGCUGU------------------------------------------------- | 9 | novel | |||||
| seed | ----------------------------------------------GGCAGAA------------------------------------------ | 7 | novel | |||||
| seed | ---------------------------------------------------AAAACUU------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------------CCAACGA-------------------------- | 4 | novel | |||||
| seed | ----------------------------------------GGCUGUG------------------------------------------------ | 4 | novel | |||||
| seed | ------------------------------------------------CAGAAAA---------------------------------------- | 3 | novel | |||||
| seed | -----------------------------------------------GCAGAAA----------------------------------------- | 3 | novel | |||||
| seed | ---------------------------------------------UGGCAGA------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------AGAAAAC--------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------GCUGUGG----------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------UCCAACG--------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------------------GAAACCC--------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------GAUUCCA------------------------------ | 1 | novel | |||||
| seed | ----------------------------GCUUGUU------------------------------------------------------------ | 1 | novel | |||||
| seed | -----------------------------------------------------------AUUCCAA----------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------TTGGCTGTGGCAGAAAACTTGA----------------------------------- | 22 | 1 | - | - | - | 1 | 7 | |
| ---------------------------------------------TGGCAGAAAACTTGATTCCA------------------------------ | 20 | - | - | - | - | - | 7 | |
| ---------------------------------------TGGCTGTGGCAGAAAACTTGA----------------------------------- | 21 | - | - | - | - | - | 4 | |
| -----------------------------------------------GCAGAAAACTTGATTCCAAC---------------------------- | 20 | - | - | - | - | - | 3 | |
| ----------------------------------------------GGCAGAAAACTTGATTCCA------------------------------ | 19 | - | 1 | - | - | - | 2 | |
| --------------------------------------------GTGGCAGAAAACTTGATTCCAAC---------------------------- | 23 | - | - | - | - | - | 2 | |
| ------------------------------------------------CAGAAAACTTGATTCCAAC---------------------------- | 19 | - | - | - | - | - | 2 | |
| -------------------------------------------------------------TCCAACGAAACCCCAGAATTAG------------ | 22 | - | - | 1 | 1 | - | - | |
| -------------------------------------------------------------TCCAACGAAACCCCAGAAT--------------- | 19 | - | - | - | - | 1 | 1 | |
| --------------------------------------------------GAAAACTTGATTCCAACGA-------------------------- | 19 | - | - | - | - | - | 2 | |
| ----------------------------------------GGCTGTGGCAGAAAACTTGA----------------------------------- | 20 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------------CGAAACCCCAGAATTAGAG---------- | 19 | - | - | - | - | - | 1 | |
| ---------------------------------------------------------TGATTCCAACGAAACCCC-------------------- | 18 | - | - | - | - | - | 1 | |
| ---------------------------AGCTTGTTTCATTGGCTGTG------------------------------------------------ | 20 | - | - | - | - | - | 1 | |
| --------------------------------------------------GAAAACTTGATTCCAACGAAACCCC-------------------- | 25 | - | - | - | - | - | 1 | |
| --------------------------------------------------GAAAACTTGATTCCAACGAAACCC--------------------- | 24 | - | - | - | - | - | 1 | |
| ------------------------------------------------------------TTCCAACGAAACCCCAGAA---------------- | 19 | 1 | - | - | - | - | - | |
| ----------------------------------------------------------GATTCCAACGAAACCCCAGA----------------- | 20 | - | - | - | - | - | 1 | |
| rat | ccaggacagtttggtagtcttcatttgagcttgtttcaTTGGCTGTGGCAGAAAACTTGATTCCAACgaaaccccagaattagagcctctgtagg | |||||||
| *********************************************************************************************** | ||||||||
| rat | ((...((((...(((..(((...((((.....(((((.((((......(((.....)))...)))).)))))..))))...)))))).)))).)) | 0.820 -16.60 | ||||||
| rat | chromosome:20:5535145:5535239:1 | intergenic |
sblock769 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.110 | no | no | 0.41/0.58 | 18/26/0.73 | 0.0 0.0 3.6 0.0 | 0.0 0.0 7.0 0.0 | 1 14 5 1 | 0 0 0 0 | 1 4 1 1 | 0 0 0 0 | 3 46 26 19 | 29 -17 -1 17 | 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.47 0.50 0.41 0.38 | 7 8 5 4 | 30 | 4 | 0 | 9 |
| reads | miRBase family seed | |||||
| seed | -----------------------------------------------GCACCAC-------------------------------------------------------------- | 17 | miR-770 | |||
| seed | -----------------------------------------------------------GUACAGA-------------------------------------------------- | 3 | novel | |||
| seed | -------------------------------------------ACCUGCA------------------------------------------------------------------ | 3 | novel | |||
| seed | -----------------------------------UGCUUUC-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------UCUCAAA-------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------AGUAUCA-------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------ACCCAUU-------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------UCUACCU--------------------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------------------ACCACAC------------------------------------------------------------ | 1 | novel | |||
| seed | ----AGAUGCA--------------------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T5S1 | T5S2 | |||
| ----------------------------------------------TGCACCACACCCTGTACAGAGT------------------------------------------------ | 22 | 1 | - | 14 | 1 | |
| ------------------------------------------TACCTGCACCACACCCTGTACAGAGT------------------------------------------------ | 26 | 1 | 1 | 1 | - | |
| ----------------------------------------------TGCACCACACCCTGTACA---------------------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------------------------------------------------GAGTATCACCCATTCTCAAACCCC---------------------------- | 24 | - | - | 1 | - | |
| ----------------------------------------------------------TGTACAGAGTATCACCCA---------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------------------------------------------TGTACAGAGTATCACCCATTCTC----------------------------------- | 23 | - | - | 1 | - | |
| ------------------------------------------------CACCACACCCTGTACAGAGT------------------------------------------------ | 20 | - | - | 1 | - | |
| ----------------------------------------------------------------------CACCCATTCTCAAACCCCAG-------------------------- | 20 | - | - | 1 | - | |
| ---------------------------------------TTCTACCTGCACCACACCC---------------------------------------------------------- | 19 | - | - | 1 | - | |
| ---AAGATGCACCCCTGTGTGG---------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------------------------------------TTCTCAAACCCCAGCTCACTC------------------- | 21 | - | - | - | 1 | |
| ----------------------------------------------------------TGTACAGAGTATCACCCATTCT------------------------------------ | 22 | - | - | 1 | - | |
| ----------------------------------CTGCTTTCTACCTGCACCACACCCT--------------------------------------------------------- | 25 | - | - | 1 | - | |
| rat | tccaagatgcacccctgtgtggctgggccaggagctgctttctaccTGCACCACACCCTGTACAGAGTatcacccattctcaaaccccagctcactccagagttcctttcatggag | |||||
| ******************************************************************************************************************** | ||||||
| ------------------------------------------------------------------------------------------------------------------------------ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||||
| rat | ((((.((.......(((.(((((((((....(((.((.....((((((.((........)).))).))).....))..)))....)))))).)))..)))........)).)))). | 0.610 -29.16 | ||||
| rat | chromosome:1:129022714:129022829:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
sblock7925 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.355 | no | no | 0.35/0.43 | 19/23/0.93 | 0.0 1.5 | 3.0 2.6 | 4 8 | 0 0 | 3 2 | 0 0 | 13 13 | -7 -18 | 5arm_loop 3arm | 1 1 | nd nd | 0.32 0.43 | 4 7 | 15 | 4 | 0 | 0 |
| reads | miRBase family seed | |||||
| seed | ----------------------------GUCUCAC-------------------------------- | 6 | novel | |||
| seed | --------------GUUUACU---------------------------------------------- | 4 | novel | |||
| seed | --------------------------------CACAUAU---------------------------- | 3 | novel | |||
| seed | ---------------------------------------CACUCUC--------------------- | 1 | novel | |||
| seed | ---------------------------------------------CUAAAGU--------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S2 | T5S1 | T5S2 | |||
| ---------------------------TGTCTCACATATCACTCTCT-------------------- | 20 | 1 | - | 5 | - | |
| -------------------------------TCACATATCACTCTCTAAAGTGA------------- | 23 | - | - | 3 | - | |
| -------------TGTTTACTGGGAGATGTCTCACA------------------------------- | 23 | - | 1 | 1 | 1 | |
| -------------TGTTTACTGGGAGATGTCT----------------------------------- | 19 | - | - | 1 | - | |
| --------------------------------------TCACTCTCTAAAGTGACAACTTA------ | 23 | - | - | 1 | - | |
| --------------------------------------------TCTAAAGTGACAACTTACTC--- | 20 | - | - | 1 | - | |
| rat | ctagggtagagaatgtttactgggagaTGTCTCACATATCACTCTCTAAAGTGAcaacttactcagg | |||||
| ******************************************************************* | ||||||
| rat | ...((((((....((.(((((.(((((((..........)).)))))..)))))))..))))))... | 0.550 -12.50 | ||||
| rat | chromosome:3:76931703:76931769:1 | intergenic |
sblock8069 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.166 | no | no | 0.42/0.56 | 20/25/0.80 | 0.0 0.0 2.2 0.0 | 0.0 0.0 3.8 0.0 | 2 1 6 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 3 8 22 24 | 23 14 -6 -6 | 5arm 5arm 5arm_loop 3arm_loop | 1 1 1 1 | nd nd nd nd | 0.45 0.67 0.35 0.38 | 4 9 4 5 | 10 | 2 | 0 | -37 |
| reads | miRBase family seed | |||
| seed | ----------------------------AGAGGUU---------------------------------------------------------- | 2 | novel | |
| seed | ----ACGUUAG---------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------AUGAUAG--------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------UGAUAGA-------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUAACC----------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------GGUAGGG------------------------------------- | 1 | novel | |
| seed | -------------------------GAUAGAG------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ---CACGTTAGTAACCACCAGCT---------------------------------------------------------------------- | 20 | - | 2 | |
| ----------------------TATGATAGAGGTTTCCCGGA--------------------------------------------------- | 20 | - | 2 | |
| -----------------------ATGATAGAGGTTTCCCGGATGCCAC--------------------------------------------- | 25 | - | 1 | |
| ---------------------------TAGAGGTTTCCCGGATGCCACTGGT----------------------------------------- | 25 | 1 | - | |
| --------TAGTAACCACCAGCTATGATAGAG------------------------------------------------------------- | 24 | - | 1 | |
| ------------------------------------------------TGGTAGGGCAATCAAGGGAGA------------------------ | 21 | - | 1 | |
| ------------------------TGATAGAGGTTTCCCGGATG------------------------------------------------- | 20 | - | 1 | |
| ---------------------------TAGAGGTTTCCCGGATGCCA---------------------------------------------- | 20 | - | 1 | |
| rat | tggCACGTTAGTAACCACCAGCTATGATAGAGGTTTCCCGGATGCCACTGGTAGGGCAATCAAGGGAGAtggctcagggtcaggatgggccat | |||
| ********************************************************************************************* | ||||
| rat | ((((.((((....(((...((((.........(((((((.((((((........)))).))..)))))))))))...)))...)))).)))). | 0.790 -30.20 | ||
| rat | chromosome:3:76972729:76972821:1 | intergenic |
sblock7974 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.036 | no | no | 0.33/0.57 | 18/24/0.70 | 0.0 2.0 1.5 0.0 | 0.0 0.8 3.2 0.0 | 1 4 4 1 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 25 33 31 20 | 19 7 -5 9 | 5arm 5arm 3arm 3arm | 1 2 2 2 | nd nd nd nd | 0.50 0.39 0.41 0.35 | 5 3 4 4 | 10 | 2 | 0 | 7 |
| reads | miRBase family seed | |||
| seed | ----------------------------------GGUUCAA------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------ACAAGCA------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------CAAAUGU--------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------GCAAACU--------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------AAGCAAA----------------------------------------------- | 1 | novel | |
| seed | --------------------------AAGACCU--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------UCACAGU----------------------------------- | 1 | miR-27a/27b | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -------------------------------------TCAAATGTTGCTGTTTCA----------------------------------------------------------------- | 18 | 1 | 1 | |
| ---------------------------------TGGTTCAAATGTTGCTGTTTC------------------------------------------------------------------ | 21 | - | 1 | |
| ---------------------------------TGGTTCAAATGTTGCTGTTTCA----------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------------------------------------------TTCACAGTGCCATGGCTCCAAGG-------------------- | 23 | - | 1 | |
| ---------------------------------------------------------------AACAAGCAAACTGTTTCACAG------------------------------------ | 21 | - | 1 | |
| ---------------------------------------------------------------AACAAGCAAACTGTTTCACA------------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------AGCAAACTGTTTCACAGTGCCA------------------------------- | 22 | - | 1 | |
| -----------------------------------------------------------------CAAGCAAACTGTTTCACAGTGCCA------------------------------- | 24 | - | 1 | |
| -------------------------TAAGACCTTGGTTCAAAT----------------------------------------------------------------------------- | 18 | - | 1 | |
| rat | tttgttccactcctcggcggaacgtTAAGACCTTGGTTCAAATGTTGCTGTTTCAgaaaggcaAACAAGCAAACTGTTTCACAGTGCCATGGCTCCAAGGctgcccaggtctgggggcaa | |||
| ************************************************************************************************************************ | ||||
| rat | .(((..((...(((.(((((..........((((((.....(((..(((((..(((....((......))...)))....)))))..)))....))))))))))).)))....))..))) | 0.870 -39.90 | ||
| rat | chromosome:3:76942982:76943101:1 | intergenic |
block62162 [novel_gcHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.071 | no | no | 0.95/0.95 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | 5 | 5arm | 1 | nd | 0.15 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------GGCGGCC---------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------CGGCGGCCCGGGCGGGCTGG---------------------------------------------------------------- | 20 | 1 | |
| rat | cgtccgccgagggggagggcggagctgcCGGCGGCCCGGGCGGGCTGGcagctagagtgggtgccagagctgcctccgccgccgccgctgccaccgcctcctccgcccgggc | ||
| **************************************************************************************************************** | |||
| rat | .(((((....((((((.(((((.((.(((((((((..((((((.((((((.((.....)).))))))..))))))..)))))))..)).))..)))))))))))...))))) | 1.000 -71.70 |
| rat | chromosome:10:17502612:17502723:1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30883 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.