other hairpins
block2149991 [novel_gcHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.045 | no | no | 0.95/0.95 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | 16 | 3arm | 1 | nd | 0.10 | 1 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------------------------------CCCCCCC--------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S2 | |||
| -----------------------------------------------------------------------------TCCCCCCCCCCGGCCCCCCC--------------- | 20 | 1 | |
| rat | aggacacctgtgtctggggggtgtgggaaacaggtggtaagggcggagcatgcgctttggtgtgggttttttctctgTCCCCCCCCCCGGCCCCCCCgaccctgggtgtgct | ||
| **************************************************************************************************************** | |||
| <<<<<<<<<<<<<<<<<<-------------------------------------------------------------------------------------------------------- | ENSRNOT00000009811 ENSRNOG00000007475 RGD1564237_predicted | ||
| rat | ((.((((((..(((.(((((((.((((.....((.((...((((((((.((.(((......))).)).....)))))))).))))))))))))))).)))...)))))).)) | 0.990 -52.30 |
| rat | chromosome:7:113539647:113539758:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000009811|ENSRNOG00000007475 ## ENSRNOG00000007475|protein_coding|RGD1564237_predicted| ## {Repeats: dust 113539662 113539680 0 class=dust} |
block2335026 [novel_gcHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.509 | no | no | 0.91/0.91 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 12 | 1 | 5arm | 1 | nd | 0.23 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------GGGGGUG------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ------------TGGGGGTGCGGGGGGGGGGGGG---------------------------------------------- | 22 | 1 | |
| rat | taagttgctactTGGGGGTGCGGGGGGGGGGGGGgtttgtcttacctgttgtcgactccttaaccaatggtgtgttcttt | ||
| ******************************************************************************** | |||
| rat | .(((..((((((.((((((.(((.((.(((..(((....)))..))).)).)))))))))........)))).)).))). | 0.780 -21.20 |
| rat | chromosome:8:84983895:84983974:-1 | intergenic ## {Repeats: dust 84983941 84983953 0 class=dust} |
block2675668 [novel_gcHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.107 | no | no | 0.95/0.95 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 6 | 20 | 3arm | 1 | nd | 0.20 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------------------------------------------------------CGGCGGC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| -------------------------------------------------------------------------------------GCGGCGGCGGCCGGCGGCCT------ | 20 | 1 | |
| rat | ctgcagacggttaccagctcgccggcgcatccctccccggctcccctccctcctccgcacatcttagcgagggcgccgcggaaacGCGGCGGCGGCCGGCGGCCTctgggg | ||
| *************************************************************************************************************** | |||
| rat | ((.((((.(((..((.((.(((((.(((.....(((.((((..(((((.((..............)).))))).)))).)))...))).))))))).))..))))))).)) | 0.910 -54.14 |
| rat | chromosome:X:22864687:22864797:-1 | intergenic |
block1502390 [novel_gcHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.639 | no | no | 0.90/0.92 | 20/24/1.00 | 1.0 | 1.0 | 3 | 0 | 2 | 0 | 8 | 13 | 5arm | 1 | nd | 0.23 | 2 | 3 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------CGCGGGG------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------GCGCGGG-------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------GGCGCGG--------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S2 | |||
| ---------GGCGCGGGGCGCGGAGCCGAGG------------------------------------------------------------ | 22 | - | 1 | |
| --------CGGCGCGGGGCGCGGAGCCGAGGG----------------------------------------------------------- | 24 | 1 | - | |
| ----------GCGCGGGGCGCGGAGCCGAG------------------------------------------------------------- | 20 | - | 1 | |
| rat | cgcgcgagCGGCGCGGGGCGCGGAGCCGAGGGaagccgagggggcggaagcggtcgcgactcttagcgcgtgtgctcgggctcctcacgtg | |||
| ******************************************************************************************* | ||||
| rat | ((((.(((.(((.(((((((((..((..((((..((.((....((....))..))))..))))..)).))))).)))).))).))).)))) | 0.700 -42.90 | ||
| rat | chromosome:3:145275718:145275808:1 | intergenic ## {SimpF: 1 Eponine,oe = 0.92 1 CpG} |
novel_lenNOK_cloningHIGH_multiarm_DicerNOK (15 loci)
sblock10095 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.073 | no | no | 0.33/0.62 | 18/26/0.35 | 0.0 0.0 6.4 | 0.0 0.0 5.5 | 69 35 11 | 0 0 0 | 8 4 3 | 0 0 0 | 16 22 26 | 21 11 -19 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.37 0.43 0.17 | 2 3 2 | 167 | 8 | -17 | -11 |
| reads | miRBase family seed | |||||||||
| seed | -----------------CCCACUA------------------------------------------------------------------------------------------- | 96 | novel | |||||||
| seed | -----------------------AGCAUCA------------------------------------------------------------------------------------- | 48 | novel | |||||||
| seed | --------------------------------------------------GCAACUC---------------------------------------------------------- | 7 | novel | |||||||
| seed | ------------------------------------------------------------------AGUAACA------------------------------------------ | 4 | novel | |||||||
| seed | --------------------------------------------------------------------UAACAGU---------------------------------------- | 2 | novel | |||||||
| seed | ------------------CCACUAG------------------------------------------------------------------------------------------ | 2 | novel | |||||||
| seed | ---------------------------------------------------------------------AACAGUU--------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------------------------------------GUAACAG----------------------------------------- | 2 | miR-194 | |||||||
| seed | --------------------------------------------------------CACUCAA---------------------------------------------------- | 1 | novel | |||||||
| seed | --------------CCUCCCA---------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -------------------------------------------------------------AAUUUAG----------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------ACUGCAA------------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------TCCCACTAGCATCACCAGT-------------------------------------------------------------------------------- | 19 | 4 | 4 | 1 | 1 | 1 | 2 | 69 | - | |
| ----------------------TAGCATCACCAGTAAGGTGGAGT---------------------------------------------------------------------- | 23 | - | 1 | - | - | - | - | 35 | 1 | |
| ----------------TCCCACTAGCATCACCAG--------------------------------------------------------------------------------- | 18 | 2 | - | - | 1 | - | - | 10 | 1 | |
| ----------------------TAGCATCACCAGTAAGGTGGAG----------------------------------------------------------------------- | 22 | - | 1 | - | - | - | - | 4 | - | |
| -------------------------------------------------TGCAACTCACTCAATTTAGTAACAGT---------------------------------------- | 26 | - | - | - | - | - | - | 4 | - | |
| ----------------------TAGCATCACCAGTAAGGTG-------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | - | 3 | - | |
| -----------------------------------------------------------------TAGTAACAGTTTCCCATTCTGGAA-------------------------- | 24 | - | 1 | - | - | - | - | 2 | - | |
| -------------------------------------------------TGCAACTCACTCAATTTAGTAACA------------------------------------------ | 24 | - | - | - | - | - | - | 3 | - | |
| ------------------------------------------------------------------AGTAACAGTTTCCCATTCTGGAA-------------------------- | 23 | - | 1 | - | - | - | - | 1 | - | |
| --------------------------------------------------------------------TAACAGTTTCCCATTCTGGA--------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| -----------------CCCACTAGCATCACCAGTA------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------TCACTCAATTTAGTAACAGTTTCCCA---------------------------------- | 26 | - | - | - | - | - | - | 1 | - | |
| ----------------------TAGCATCACCAGTAAGGTGGA------------------------------------------------------------------------ | 21 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------TAGTAACAGTTTCCCATTCTG----------------------------- | 21 | - | - | - | - | - | - | - | 1 | |
| -------------CCCTCCCACTAGCATCACCAG--------------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------GTAACAGTTTCCCATTCTG----------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------CAATTTAGTAACAGTTTCCCA---------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------GTAACAGTTTCCCATTCTGGAA-------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------GACTGCAACTCACTCAATT-------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| ----------------------TAGCATCACCAGTAAGGTGG------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 1 | - | |
| rat | atggcccactgcgcccTCCCACTAGCATCACCAGTAAGGTGGAGTagactgcaactcactcaatttagtaacagtttcccattctggaatggaggggaggcaggctcagttaaca | |||||||||
| ******************************************************************************************************************* | ||||||||||
| rat | .......((((.((((((((.((..(((..((((...(((((...((((((..(((..........)))..)))))).))))))))).))).))))))))...)).))))..... | 0.600 -33.10 | ||||||||
| rat | chromosome:6:122563086:122563200:-1 | intergenic |
sblock10121 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.037 | no | no | 0.25/0.45 | 18/24/0.44 | 0.0 0.7 0.0 | 0.0 0.0 2.3 | 1 6 52 | 0 0 0 | 1 1 7 | 0 0 0 | 17 25 22 | 5 -4 3 | 5arm 5arm_loop 3arm | 1 1 1 | nd nd nd | 0.30 0.43 0.21 | 2 5 2 | 96 | 7 | 6 | 11 |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------------------------------------UCCUUUA-------------------------------------- | 84 | novel | ||||||
| seed | ----------------------------GCUUAAA--------------------------------------------------------------------- | 4 | novel | ||||||
| seed | ----------------------------------------------------AAAUGUU--------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------UUGCUUA----------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------------CCUUUAA------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------------------AAAGAUA-------------------------------- | 1 | novel | ||||||
| seed | ------------------GUGUAGU------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------------------GAAAUGU---------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------TTCCTTTAAAGATACCGC---------------------------- | 18 | 5 | 3 | 1 | 1 | - | 22 | 1 | |
| ----------------------------------------------------------TTCCTTTAAAGATACCGCGCAGAA---------------------- | 24 | 5 | - | - | - | 1 | 18 | - | |
| ----------------------------------------------------------TTCCTTTAAAGATACCGCG--------------------------- | 19 | 1 | 2 | - | - | - | 12 | 1 | |
| ----------------------------------------------------------TTCCTTTAAAGATACCGCGC-------------------------- | 20 | 1 | 2 | - | - | - | 5 | - | |
| ---------------------------TGCTTAAATGGATCAGAGT---------------------------------------------------------- | 19 | - | - | - | - | - | 4 | - | |
| ----------------------------------------------------------TTCCTTTAAAGATACCGCGCAGA----------------------- | 23 | - | - | - | - | - | 3 | - | |
| -------------------------CTTGCTTAAATGGATCAGAGT---------------------------------------------------------- | 21 | - | - | - | - | - | 2 | - | |
| --------------------------------------------------AGAAATGTTTCCTTTAAAGATACC------------------------------ | 24 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------GAAATGTTTCCTTTAAAGATACC------------------------------ | 23 | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------GAAATGTTTCCTTTAAAGAT--------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------TAAAGATACCGCGCAGAAT--------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------TGTGTAGTCTTGCTTAAATG------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | |
| -----------------------------------------------------------TCCTTTAAAGATACCGCGCAGA----------------------- | 22 | - | - | - | - | - | 1 | - | |
| rat | ttttctgccctgcattctgtgtagtcttgcttaaatggatcagagtatttagaaatgtTTCCTTTAAAGATACCGCGCAGAAtatcattgactggggcaggggg | ||||||||
| ******************************************************************************************************** | |||||||||
| rat | ((..(((((((.(((((((((..((.((..(((((.(((.((.............))..)))))))).)).))..)))))))......))...)))))))..)) | 0.650 -29.62 | |||||||
| rat | chromosome:6:122569633:122569736:-1 | intergenic |
sblock10128 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.240 | no | no | 0.21/0.53 | 18/25/0.63 | 0.0 0.0 0.0 0.0 1.0 | 0.0 0.8 0.0 0.0 1.0 | 4 47 1 1 5 | 0 0 0 0 0 | 1 7 1 1 1 | 0 0 0 0 0 | 6 13 28 21 12 | 13 2 -2 5 11 | 5arm 5arm 3arm_loop 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.26 0.39 0.42 0.47 0.47 | 3 7 7 6 9 | 95 | 7 | 10 | 8 |
| reads | miRBase family seed | ||||||||
| seed | --------------GCAUUGU----------------------------------------------------------------- | 80 | novel | ||||||
| seed | -------GCAAGAA------------------------------------------------------------------------ | 4 | novel | ||||||
| seed | -----------------------------------------------------UCUGAUA-------------------------- | 2 | novel | ||||||
| seed | ------------------------------------------------------CUGAUAA------------------------- | 2 | novel | ||||||
| seed | --------------------------------------------------------GAUAAGU----------------------- | 1 | novel | ||||||
| seed | ---------------CAUUGUC---------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----------------------------------------GGGGCCU--------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------CCUUUUU-------------------------------- | 1 | novel | ||||||
| seed | ----------------AUUGUCA--------------------------------------------------------------- | 1 | novel | ||||||
| seed | ------------AAGCAUU------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -----GUGCAAG-------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------AGCATTGTCAGATATGAATG----------------------------------------------------- | 20 | 1 | - | - | - | - | 34 | 1 | |
| -------------AGCATTGTCAGATATGAATGGAC-------------------------------------------------- | 23 | - | - | - | - | 1 | 13 | - | |
| -------------AGCATTGTCAGATATGAA------------------------------------------------------- | 18 | 1 | - | - | 1 | - | 7 | - | |
| -------------AGCATTGTCAGATATGAATGGACCC------------------------------------------------ | 25 | - | - | - | - | - | 7 | - | |
| -------------AGCATTGTCAGATATGAAT------------------------------------------------------ | 19 | 1 | 1 | - | - | - | 4 | - | |
| -------------AGCATTGTCAGATATGAATGG---------------------------------------------------- | 21 | - | - | 1 | - | - | 3 | - | |
| ------TGCAAGAAGCATTGTCAGA------------------------------------------------------------- | 19 | - | - | - | - | - | 4 | - | |
| -------------AGCATTGTCAGATATGAATGGACC------------------------------------------------- | 24 | - | - | - | - | - | 3 | - | |
| -----------------------------------------------------TCTGATAAGTGATAGAAAT-------------- | 19 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------TTCTGATAAGTGATAGAAA--------------- | 19 | - | - | - | - | - | 2 | - | |
| ----TGTGCAAGAAGCATTGTCAGA------------------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| -------------AGCATTGTCAGATATGAATGGA--------------------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| -----------GAAGCATTGTCAGATATGA-------------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ---------------CATTGTCAGATATGAATGGAC-------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ----------------------------------------------TCCTTTTTCTGATAAGTGA--------------------- | 19 | - | - | - | - | - | 1 | - | |
| ---------------------------------------TGGGGCCTCCTTTTTCTGA---------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TGATAAGTGATAGAAATTA------------ | 19 | - | - | - | - | - | 1 | - | |
| --------------GCATTGTCAGATATGAATG----------------------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| rat | gctctgtgcaagaAGCATTGTCAGATATGAATGGACccttggggcctcctttttctgataagtgatagaaattattgtgggaagca | ||||||||
| ************************************************************************************** | |||||||||
| rat | (((((.(((((...((.((((((((.......((.(((...))))).......))))))))))...........)))))))).)). | 0.460 -19.48 | |||||||
| rat | chromosome:6:122573754:122573839:-1 | intergenic |
sblock2399 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.022 | no | no | 0.42/0.72 | 18/25/0.46 | 0.1 0.0 1.5 | 1.9 0.0 1.5 | 61 1 2 | 0 0 0 | 10 1 2 | 0 0 0 | 17 47 16 | 5 -18 7 | 5arm 5arm_loop_3arm 3arm | 1 1 3 | nd nd nd | 0.28 0.37 0.32 | 3 4 3 | 83 | 10 | 2 | -5 |
| reads | miRBase family seed | |||||||||||
| seed | -------------------CCCCCUG----------------------------------------------------------------------- | 70 | novel | |||||||||
| seed | ------------------ACCCCCU------------------------------------------------------------------------ | 7 | novel | |||||||||
| seed | --------------------CCCCUGG---------------------------------------------------------------------- | 3 | miR-331 | |||||||||
| seed | ------------------------------------------------GUUGGUG------------------------------------------ | 1 | novel | |||||||||
| seed | ---------------------------------------------------------------CCUAUAU--------------------------- | 1 | novel | |||||||||
| seed | ------------------------------------------------------------GUUCCUA------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------ACCCCCTGGACATGGGCAA------------------------------------------------------------ | 19 | 2 | - | 3 | 2 | 4 | 2 | - | - | 5 | - | |
| ------------------ACCCCCTGGACATGGGCAAG----------------------------------------------------------- | 20 | 2 | 1 | 2 | 2 | 3 | 1 | 2 | - | 1 | 2 | |
| ------------------ACCCCCTGGACATGGGCA------------------------------------------------------------- | 18 | - | 1 | - | 1 | 6 | 3 | - | 2 | 1 | - | |
| ------------------ACCCCCTGGACATGGGCAAGG---------------------------------------------------------- | 21 | 1 | - | 1 | 1 | 1 | 2 | - | - | 2 | - | |
| ------------------ACCCCCTGGACATGGGCAAGGAG-------------------------------------------------------- | 23 | - | - | 2 | 1 | 2 | - | - | - | 2 | - | |
| -----------------CACCCCCTGGACATGGGC-------------------------------------------------------------- | 18 | - | - | - | - | 5 | - | - | - | - | 1 | |
| ------------------ACCCCCTGGACATGGGCAAGGAGA------------------------------------------------------- | 24 | - | - | - | - | 1 | 2 | - | - | - | - | |
| ------------------ACCCCCTGGACATGGGCAAGGAGAC------------------------------------------------------ | 25 | 2 | - | - | - | - | - | - | - | - | - | |
| ------------------ACCCCCTGGACATGGGCAAGGA--------------------------------------------------------- | 22 | 1 | - | - | 1 | - | - | - | - | - | - | |
| -------------------CCCCCTGGACATGGGCAA------------------------------------------------------------ | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| -------------------CCCCCTGGACATGGGCAAGGAG-------------------------------------------------------- | 22 | - | - | - | - | 1 | - | - | - | - | - | |
| --------------------------------------------------------------TCCTATATCAGTCAGGGGC---------------- | 19 | - | - | - | 1 | - | - | - | - | - | - | |
| -----------------CACCCCCTGGACATGGGCA------------------------------------------------------------- | 19 | - | - | - | - | - | - | - | 1 | - | - | |
| -------------------CCCCCTGGACATGGGCAAGGAGA------------------------------------------------------- | 23 | - | - | - | - | 1 | - | - | - | - | - | |
| -----------------------------------------------TGTTGGTGGTGTTGTTCCT------------------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------TGTTCCTATATCAGTCAGG------------------- | 19 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | gtttacaacaaacatacCACCCCCTGGACATGGGCAAGGAGACaccatgttggtggtgttgttcctatatcagtcaggggcagagcagatgtaggcc | |||||||||||
| ************************************************************************************************* | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049048 ENSRNOG00000030628 Eif4a1 | |||||||||||
| rat | (((((((.............(((((((...(((...((((((((((((....))))))))..))))...))).))))))).........))))))). | 0.730 -32.25 | ||||||||||
| rat | chromosome:10:56487135:56487231:-1 | Same_strand|Intronic_coding|ENSRNOT00000049048|ENSRNOG00000030628 ## ENSRNOG00000030628|protein_coding|Eif4a1|eukaryotic translation initiation factor 4A1 [Source:RefSeq_peptide;Acc:NP_955404] |
sblock2544 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.62/0.78 | 18/23/0.66 | 0.0 0.8 | 1.5 1.6 | 34 10 | 0 0 | 8 6 | 0 0 | 7 2 | 3 3 | 5arm 3arm | 2 2 | 33 1 | 0.20 0.11 | 3 1 | 94 | 10 | 1 | 5 |
| reads | miRBase family seed | |||||||||||
| seed | --------CCAGGGC-------------------------------------------------- | 61 | novel | |||||||||
| seed | ----------------------------------------UCACACC------------------ | 14 | novel | |||||||||
| seed | ------------------------------------------ACACCGC---------------- | 6 | novel | |||||||||
| seed | ---------CAGGGCA------------------------------------------------- | 6 | novel | |||||||||
| seed | -------CCCAGGG--------------------------------------------------- | 5 | novel | |||||||||
| seed | -----AGCCCAG----------------------------------------------------- | 1 | novel | |||||||||
| seed | ---------------------------------------UUCACAC------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------CCCAGGGCAGAGCAGTGTGAAC------------------------------------ | 22 | 15 | 3 | - | - | - | 2 | - | 1 | - | 4 | |
| -------CCCAGGGCAGAGCAGTGTGA-------------------------------------- | 20 | 12 | 4 | - | - | 2 | - | 1 | 2 | 1 | - | |
| -------CCCAGGGCAGAGCAGTGT---------------------------------------- | 18 | 3 | 7 | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------TTCACACCGCCTCTGCCC-------- | 18 | - | 4 | - | - | - | 2 | - | - | - | 1 | |
| --------CCAGGGCAGAGCAGTGTGA-------------------------------------- | 19 | 3 | 1 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------TTCACACCGCCTCTGCCCG------- | 19 | 1 | 1 | 1 | - | - | - | - | - | - | - | |
| -----------------------------------------CACACCGCCTCTGCCCGCTAGT-- | 22 | 1 | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TTCACACCGCCTCTGCCCGCTA---- | 22 | 1 | - | - | 1 | - | - | - | - | - | - | |
| ------GCCCAGGGCAGAGCAGTGTGA-------------------------------------- | 21 | 2 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACACCGCCTCTGCCCGC------ | 18 | - | 2 | - | - | - | - | - | - | - | - | |
| ---------------------------------------TTCACACCGCCTCTGCCCGC------ | 20 | - | 1 | 1 | - | - | - | - | - | - | - | |
| -------CCCAGGGCAGAGCAGTGTGAA------------------------------------- | 21 | - | - | - | - | - | - | - | 1 | 1 | - | |
| -------CCCAGGGCAGAGCAGTGTG--------------------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| -----------------------------------------CACACCGCCTCTGCCCGCTAG--- | 21 | - | 1 | - | - | - | - | - | - | - | - | |
| ------GCCCAGGGCAGAGCAGTGTG--------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| ------GCCCAGGGCAGAGCAGTGT---------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ----GAGCCCAGGGCAGAGCAGT------------------------------------------ | 19 | - | - | - | - | - | 1 | - | - | - | - | |
| --------------------------------------CTTCACACCGCCTCTGCCC-------- | 19 | - | 1 | - | - | - | - | - | - | - | - | |
| ------GCCCAGGGCAGAGCAGTGTGAAC------------------------------------ | 23 | - | 1 | - | - | - | - | - | - | - | - | |
| --------CCAGGGCAGAGCAGTGTGAAC------------------------------------ | 21 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | ggcagagCCCAGGGCAGAGCAGTGTGAACagcgcttgtcttcacaccgcctctgcccgctagtgt | |||||||||||
| ***************************************************************** | ||||||||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>> | ENSRNOT00000005977 ENSRNOG00000004430 NP_001101780.1 | |||||||||||
| rat | .(((.(((...(((((((((.(((((((..((....)).))))))).)).))))))))))..))) | 0.800 -28.60 | ||||||||||
| rat | chromosome:10:109476482:109476546:-1 | Same_strand|Boundary_coding|ENSRNOT00000005977|ENSRNOG00000004430 ## Same_strand|Intronic_coding|ENSRNOT00000005977|ENSRNOG00000004430 ## ENSRNOG00000004430|protein_coding|NP_001101780.1|5-azacytidine induced gene 1 [Source:RefSeq_peptide;Acc:NP_001101780] |
sblock4291 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.48/0.61 | 18/25/0.61 | 0.1 0.0 | 3.0 1.0 | 41 30 | 0 0 | 9 9 | 0 0 | 21 24 | 7 10 | 5arm 3arm | 1 1 | nd nd | 0.35 0.23 | 5 3 | 117 | 10 | 0 | 2 |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------CUCCCUC---------------------------------------------------------------------------------- | 53 | miR-343 | |||||||||
| seed | ------------------------------------------------------------------CACAAGA-------------------------------------- | 40 | novel | |||||||||
| seed | -----------------------UCCCUCU--------------------------------------------------------------------------------- | 23 | novel | |||||||||
| seed | ---------------------GCUCCCU----------------------------------------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------ACACAAGAGCATGAGGGTCTTC------------------------ | 22 | 2 | 5 | 2 | - | 1 | 1 | - | - | - | 3 | |
| -----------------------------------------------------------------ACACAAGAGCATGAGGGTCT-------------------------- | 20 | 2 | - | - | - | 1 | - | - | 3 | 2 | 5 | |
| ---------------------GCTCCCTCTAGTCCTCTTG----------------------------------------------------------------------- | 19 | 4 | 1 | - | 1 | 1 | 2 | - | - | 2 | 1 | |
| ---------------------GCTCCCTCTAGTCCTCTT------------------------------------------------------------------------ | 18 | 4 | 2 | - | - | 1 | 1 | 1 | - | - | 2 | |
| -----------------------------------------------------------------ACACAAGAGCATGAGGGTC--------------------------- | 19 | 4 | 1 | - | - | - | 1 | 2 | - | - | 1 | |
| ---------------------GCTCCCTCTAGTCCTCTTGGTT-------------------------------------------------------------------- | 22 | - | 4 | - | - | 2 | - | 1 | - | 2 | - | |
| ---------------------GCTCCCTCTAGTCCTCTTGGTTGT------------------------------------------------------------------ | 24 | 5 | 1 | - | 1 | 1 | - | - | - | - | - | |
| ---------------------GCTCCCTCTAGTCCTCTTGGTTG------------------------------------------------------------------- | 23 | 1 | - | - | - | 2 | - | - | 2 | - | 2 | |
| ----------------------CTCCCTCTAGTCCTCTTGGTTGT------------------------------------------------------------------ | 23 | 1 | 1 | - | - | 2 | - | 1 | - | - | - | |
| ----------------------CTCCCTCTAGTCCTCTTGG---------------------------------------------------------------------- | 19 | 2 | 1 | - | - | - | 1 | - | - | - | 1 | |
| ----------------------CTCCCTCTAGTCCTCTTGGT--------------------------------------------------------------------- | 20 | 2 | 1 | - | - | 1 | - | - | - | - | - | |
| ----------------------CTCCCTCTAGTCCTCTTG----------------------------------------------------------------------- | 18 | 1 | 1 | - | - | - | 1 | - | - | 1 | - | |
| ---------------------GCTCCCTCTAGTCCTCTTGGT--------------------------------------------------------------------- | 21 | 1 | 1 | - | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------ACACAAGAGCATGAGGGTCTTCA----------------------- | 23 | 1 | - | - | - | - | - | - | - | - | 1 | |
| -----------------------------------------------------------------ACACAAGAGCATGAGGGT---------------------------- | 18 | 1 | - | - | - | 1 | - | - | - | - | - | |
| ---------------------GCTCCCTCTAGTCCTCTTGG---------------------------------------------------------------------- | 20 | 1 | - | - | - | - | - | - | - | - | 1 | |
| ----------------------CTCCCTCTAGTCCTCTTGGTTGTG----------------------------------------------------------------- | 24 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ----------------------CTCCCTCTAGTCCTCTTGGTT-------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------GGCTCCCTCTAGTCCTCT------------------------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | - | - | - | |
| ----------------------CTCCCTCTAGTCCTCTTGGTTGTGG---------------------------------------------------------------- | 25 | - | 1 | - | - | - | - | - | - | - | - | |
| ---------------------GCTCCCTCTAGTCCTCTTGGTTGTG----------------------------------------------------------------- | 25 | - | - | - | - | 1 | - | - | - | - | - | |
| ----------------------CTCCCTCTAGTCCTCTTGGTTG------------------------------------------------------------------- | 22 | - | - | - | - | - | - | - | - | - | 1 | |
| rat | tcctctttggggaagcactggGCTCCCTCTAGTCCTCTTGGTTGTggctgccaagggatctttccACACAAGAGCATGAGGGTCTTCagtggagccccaggcactgcggga | |||||||||||
| *************************************************************************************************************** | ||||||||||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>.................................................................................... | ENSRNOT00000024813 ENSRNOG00000018319 LOC683500 | |||||||||||
| rat | ((((.(((((((...(((((((..(((((.....((((((..(((((...((...))......)))))))))))...)))))..)))))))...)))))))......)))) | 0.420 -42.40 | ||||||||||
| rat | chromosome:14:83742064:83742174:1 | Same_strand|Boundary_non-coding|ENSRNOT00000057781|ENSRNOG00000018319 ## intergenic ## ENSRNOG00000018319|protein_coding|LOC683500| |
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