other hairpins
novel_lenNOK_cloningHIGH_multiarm_DicerNOK (15 loci)
sblock5556 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.011 | no | no | 0.32/0.67 | 18/23/0.06 | 0.0 0.0 0.0 | 0.7 0.0 0.0 | 3 46 1 | 0 0 0 | 2 6 1 | 0 0 0 | 1 30 24 | 27 0 11 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.16 0.26 0.33 | 1 3 2 | 64 | 6 | 12 | 11 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------GCAUUUC-------------------------------------------------------------------- | 58 | novel | |||||
| seed | --CCAGAGG------------------------------------------------------------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------CAUUUCU------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------CUGCAUU---------------------------------------------------------------------- | 1 | miR-20a* | |||||
| seed | -----------------------------------------------------------------AGUCCAC---------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T5S1 | T5S2 | |||
| ------------------------------TGCATTTCTTGTTTCTCAT--------------------------------------------------------- | 19 | 5 | 3 | 1 | 1 | 46 | 1 | |
| -TCCAGAGGAGCAAATCACCAC------------------------------------------------------------------------------------ | 21 | - | - | - | - | 2 | - | |
| ----------------------------CCTGCATTTCTTGTTTCTCA---------------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| ----------------------------------------------------------------AAGTCCACCGGGGCCGTT------------------------ | 18 | - | - | - | - | 1 | - | |
| -TCCAGAGGAGCAAATCACC-------------------------------------------------------------------------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------------GCATTTCTTGTTTCTCATACCTG---------------------------------------------------- | 23 | - | - | - | - | - | 1 | |
| ------------------------------TGCATTTCTTGTTTCTCA---------------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| rat | ctccagaggagcaaatcaccacgcaaccccTGCATTTCTTGTTTCTCATacctgtggccacaagaagtccaccggggccgtttgggggatttctcccacttctaga | |||||||
| ********************************************************************************************************** | ||||||||
| rat | .((.(((((((.(((((.(((.((..((((((.(((((((((...((((....))))..))))))))).))..))))..)).)))..)))))))))....))).)) | 0.920 -33.70 | ||||||
| rat | chromosome:18:63574876:63574981:-1 | intergenic |
sblock5729 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.324 | no | no | 0.42/0.57 | 18/25/0.08 | 0.0 0.0 0.0 0.2 0.0 | 0.0 0.0 0.0 0.0 0.0 | 45 1 2 4 17 | 0 0 0 0 0 | 6 1 2 2 3 | 0 0 0 0 0 | 18 29 48 30 17 | 19 4 -12 -7 12 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.47 0.30 0.65 0.42 0.26 | 6 3 9 5 2 | 88 | 7 | -8 | -6 |
| reads | miRBase family seed | ||||||||
| seed | -------------------GGACACU--------------------------------------------------------------------------------------- | 55 | novel | ||||||
| seed | ------------------------------------------------------------------------------GGGAAUC---------------------------- | 24 | novel | ||||||
| seed | ------------------------------------------------------------UCAAAGU---------------------------------------------- | 3 | novel | ||||||
| seed | -------------------------------------------------GGUAGAC--------------------------------------------------------- | 2 | miR-379 | ||||||
| seed | ----------------ACUGGAC------------------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | -----------------------------------------------------------GUCAAAG----------------------------------------------- | 1 | novel | ||||||
| seed | ------------------------------ACUGAAG---------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------ACACUUC------------------------------------------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ------------------TGGACACTTCTTACTGAAG---------------------------------------------------------------------------- | 19 | 3 | 3 | - | 1 | 1 | 2 | 45 | |
| -----------------------------------------------------------------------------TGGGAATCCACAGAGGAAA----------------- | 19 | 1 | - | 3 | - | - | - | 17 | |
| -----------------------------------------------------------------------------TGGGAATCCACAGAGGAA------------------ | 18 | - | - | - | - | - | - | 3 | |
| -----------------------------------------------------------GTCAAAGTCATCTGGGTCTGGGAA------------------------------ | 24 | - | - | - | - | - | - | 3 | |
| ------------------------------------------------GGGTAGACCGAGTCAAAGTC--------------------------------------------- | 20 | - | 1 | - | - | - | - | 1 | |
| ----------------------------------------------------------AGTCAAAGTCATCTGGGTCTGGGAA------------------------------ | 25 | - | - | 1 | - | - | - | - | |
| ---------------CACTGGACACTTCTTACTGA------------------------------------------------------------------------------ | 20 | - | - | - | - | - | - | 1 | |
| -----------------------------TACTGAAGGAACCCACCCAGGGT------------------------------------------------------------- | 23 | - | - | - | - | - | - | 1 | |
| --------------------GACACTTCTTACTGAAGGA-------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | |
| rat | ggccctgcaggagcacacTGGACACTTCTTACTGAAGgaacccacccagggtagaccgagtcaaagtcatctgggtcTGGGAATCCACAGAGGAAAttaaggctcagctggtt | ||||||||
| ***************************************************************************************************************** | |||||||||
| rat | .(((..((..((((...((......(((((.(((..(((.((((((((((...(((.........))).)))))))..)))..))).))))))))....)))))).)).))). | 0.610 -33.00 | |||||||
| rat | chromosome:19:15928861:15928973:-1 | intergenic |
sblock6099 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.123 | no | no | 0.33/0.52 | 18/23/0.01 | 0.0 0.0 | 0.0 0.0 | 646 1 | 0 0 | 10 1 | 0 0 | 19 35 | 16 -2 | 5arm 3arm_loop | 1 1 | nd nd | 0.16 0.26 | 2 3 | 907 | 10 | -18 | -13 |
| reads | miRBase family seed | |||||||||||
| seed | --------------------GUAAACA------------------------------------------------------------------------------------------ | 877 | miR-30a/30b/30c/30d/30e/384 | |||||||||
| seed | ---------------------UAAACAU----------------------------------------------------------------------------------------- | 29 | novel | |||||||||
| seed | ------------------------------------------------------------CAGUGGU-------------------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------------TGTAAACATCCTTAACTGG------------------------------------------------------------------------------- | 19 | 91 | 62 | 11 | 22 | 71 | 42 | 63 | 106 | 92 | 161 | |
| -------------------TGTAAACATCCTTAACTG-------------------------------------------------------------------------------- | 18 | 15 | 14 | 4 | 5 | 11 | 5 | 18 | 25 | 28 | 20 | |
| --------------------GTAAACATCCTTAACTGG------------------------------------------------------------------------------- | 18 | 8 | 2 | 1 | 2 | 4 | 1 | - | 1 | 2 | 8 | |
| -------------------TGTAAACATCCTTAACTGGT------------------------------------------------------------------------------ | 20 | 2 | - | 1 | - | 2 | 1 | 1 | 2 | 1 | 1 | |
| -----------------------------------------------------------CCAGTGGTAGCCAGTTTACCCTT----------------------------------- | 23 | 1 | - | - | - | - | - | - | - | - | - | |
| rat | agctttactttcattcttcTGTAAACATCCTTAACTGGtcctggtgaaatcactttagcccagtggtagccagtttacccttagggttatgttgacaactgtcctttggtctatgct | |||||||||||
| ********************************************************************************************************************* | ||||||||||||
| rat | (((...(((..........(((.(((((((((((..(((.(((((...((((((.......)))))).)))))...))).))))))..))))).)))..........)))....))) | 0.790 -26.05 | ||||||||||
| rat | chromosome:2:139241907:139242023:-1 | intergenic |
sblock6707 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.016 | no | no | 0.38/0.52 | 18/26/0.35 | 0.0 0.0 0.7 6.0 0.0 0.0 | 0.0 0.0 0.0 3.8 0.0 0.0 | 1 23 11 4 1 18 | 0 0 0 0 0 0 | 1 7 2 1 1 2 | 0 0 0 0 0 0 | 1 19 34 46 33 14 | 33 20 0 -18 -6 16 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.71 0.37 0.29 0.52 0.50 0.37 | 17 5 2 11 5 6 | 96 | 8 | 0 | -10 |
| reads | miRBase family seed | |||||||||
| seed | --------------------ACACUCA------------------------------------------------------------------------------------------- | 35 | novel | |||||||
| seed | --------------------------------------------------------------------------------------GUGAAGA------------------------- | 21 | novel | |||||||
| seed | ------------------------------------CUACACC--------------------------------------------------------------------------- | 6 | novel | |||||||
| seed | ------------GAACCUA--------------------------------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -----------------------------------UCUACAC---------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -------------------------CAGGCAC-------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ------------------AUACACU--------------------------------------------------------------------------------------------- | 3 | novel | |||||||
| seed | ---------------------CACUCAG------------------------------------------------------------------------------------------ | 2 | novel | |||||||
| seed | ----------------------------------------------------------------------------------------GAAGAAC----------------------- | 2 | novel | |||||||
| seed | -----------------------------------------------------------------------------GAGGGAC---------------------------------- | 2 | novel | |||||||
| seed | --------------ACCUAUA------------------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | --------------------------------------ACACCUU------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | ----------------------------GCACUAU----------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------AAGUCAA----------------------------------------------------- | 1 | novel | |||||||
| seed | ---------------------------------------------------GGAGUCU------------------------------------------------------------ | 1 | novel | |||||||
| seed | -------------AACCUAU-------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------CCAAGGA---------------------------------------------------------------- | 1 | novel | |||||||
| seed | --CAGGGUG------------------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------------------------------------GGACAUG------------------------------- | 1 | novel | |||||||
| seed | ------------------------UCAGGCA--------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | --------------------------------------------------------CUAAGUC------------------------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------------------AGAAGGG----------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| -------------------TACACTCAGGCACTATTCT-------------------------------------------------------------------------------- | 19 | 3 | - | - | 2 | - | 1 | 23 | - | |
| -------------------------------------------------------------------------------------TGTGAAGAACCCTGAAGTG-------------- | 19 | - | - | - | - | - | - | 18 | - | |
| -----------------------------------TCTACACCTTGTCCAAGGAGTCT------------------------------------------------------------ | 23 | - | - | - | - | 1 | - | 5 | - | |
| -----------TGAACCTATACACTCAGGCACT------------------------------------------------------------------------------------- | 22 | 1 | 1 | - | - | 1 | - | 1 | - | |
| ----------------------------------TTCTACACCTTGTCCAAGGAGTCT------------------------------------------------------------ | 24 | - | - | - | - | 2 | - | 2 | - | |
| ------------------------TCAGGCACTATTCTACACCTTGTCC--------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 3 | - | |
| -------------AACCTATACACTCAGGCACT------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | - | 2 | - | |
| -----------------TATACACTCAGGCACTATTCT-------------------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 2 | - | |
| -------------------------------------------------------------------------------------TGTGAAGAACCCTGAAGT--------------- | 18 | - | - | - | - | - | - | 2 | - | |
| -------------------TACACTCAGGCACTATTCTACACCTT------------------------------------------------------------------------- | 26 | 1 | - | - | - | - | - | - | 1 | |
| -------------------------------------TACACCTTGTCCAAGGAGTCT------------------------------------------------------------ | 21 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------------------------------------------TGAAGAACCCTGAAGTGCCTG---------- | 21 | - | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------TGAGGGACATGTGAAGAACCC--------------------- | 21 | - | - | - | - | - | - | 2 | - | |
| -------------------TACACTCAGGCACTATTCTACACCT-------------------------------------------------------------------------- | 25 | 1 | - | - | - | - | - | 1 | - | |
| -------------------TACACTCAGGCACTATTCTAC------------------------------------------------------------------------------ | 21 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------TCTAAGTCAAGAAGGGACC-------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------------------------------------AGGAGTCTAAGTCAAGAAGGGACCT------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| --------------------ACACTCAGGCACTATTCTACAC---------------------------------------------------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------------------------------------TGTGAAGAACCCTGAAGTGCC------------ | 21 | - | 1 | - | - | - | - | - | - | |
| -------------------------------------------------------------------------------GGGACATGTGAAGAACCCTGAAGTG-------------- | 25 | - | - | - | - | - | - | 1 | - | |
| -----------------TATACACTCAGGCACTAT----------------------------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| -CCAGGGTGACTGAACCTATACACT--------------------------------------------------------------------------------------------- | 24 | - | - | 1 | - | - | - | - | - | |
| ---------------------------------------------------------------AAGAAGGGACCTATGAGGGACA--------------------------------- | 22 | - | - | - | - | - | - | 1 | - | |
| ---------------------------GGCACTATTCTACACCTTGTC---------------------------------------------------------------------- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------GAACCTATACACTCAGGCACT------------------------------------------------------------------------------------- | 21 | 1 | - | - | - | - | - | - | - | |
| -----------------------CTCAGGCACTATTCTACAC---------------------------------------------------------------------------- | 19 | - | 1 | - | - | - | - | - | - | |
| -------------------TACACTCAGGCACTATTCTACACC--------------------------------------------------------------------------- | 24 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------TCCAAGGAGTCTAAGTCAAGAAGG------------------------------------------------ | 24 | - | - | - | - | - | - | 1 | - | |
| ---------------------------------------------------------TAAGTCAAGAAGGGACCTA------------------------------------------ | 19 | - | - | - | - | - | - | 1 | - | |
| --------------------ACACTCAGGCACTATTCTACACC--------------------------------------------------------------------------- | 23 | 1 | - | - | - | - | - | - | - | |
| rat | accagggtgactgaacctaTACACTCAGGCACTATTCTacaccttgtccaaggagtctaagtcaagaagggacctatgagggacaTGTGAAGAACCCTGAAGTGcctgtgagccctgg | |||||||||
| ********************************************************************************************************************** | ||||||||||
| rat | .(((((((.................((((((((.((((.(((..(((((..((.((((...........)))))).....))))).))).))))......))))))))...))))))) | 0.680 -38.65 | ||||||||
| rat | chromosome:20:5509826:5509943:-1 | intergenic |
sblock6759 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.148 | no | no | 0.32/0.60 | 18/24/0.64 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.4 0.0 | 1 10 27 1 | 0 0 0 0 | 1 2 3 1 | 0 0 0 0 | 16 22 12 0 | 1 5 11 22 | 5arm 3arm 3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.30 0.50 0.45 0.45 | 3 4 5 4 | 56 | 3 | 9 | 7 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------GGCAAAC-------------------------- | 42 | novel | ||
| seed | -------------------------------------------------------GGGUCUG-------------------------------- | 11 | novel | ||
| seed | ----------------------------------------------------------------AAACUUU----------------------- | 1 | novel | ||
| seed | -----------------AGAUGCA---------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------AAAUGCU--------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------------TGGCAAACTTTTAAATGCTGAG------------ | 22 | - | - | 17 | |
| ------------------------------------------------------TGGGTCTGGCAAACTTTT---------------------- | 18 | 1 | - | 10 | |
| ------------------------------------------------------------TGGCAAACTTTTAAATGCTGA------------- | 21 | 1 | - | 10 | |
| ------------------------------------------------------------TGGCAAACTTTTAAATGCT--------------- | 19 | - | - | 5 | |
| ------------------------------------------------------------TGGCAAACTTTTAAATGCTG-------------- | 20 | - | 1 | 3 | |
| ------------------------------------------------------------TGGCAAACTTTTAAATGC---------------- | 18 | - | - | 3 | |
| ------------------------------------------------------------TGGCAAACTTTTAAATGCTGAGGT---------- | 24 | - | - | 2 | |
| -----------------------------------------------------------------------TAAATGCTGAGGTAGCTGCACTG | 23 | - | - | 1 | |
| ----------------TAGATGCAGGGGGTCCACCA---------------------------------------------------------- | 20 | - | 1 | - | |
| ---------------------------------------------------------------CAAACTTTTAAATGCTGAG------------ | 19 | - | - | 1 | |
| rat | gcgagaggctttggcatagatgcagggggtccaccatgtagtgggggaggtgcgTGGGTCTGGCAAACTTTTAAATGCTGAGgtagctgcactg | ||||
| ********************************************************************************************** | |||||
| rat | ((.((..((((..((((((.(((...((..(((((((............))).))))..)).)))..)).....))))..))))..)))).... | 0.930 -28.60 | |||
| rat | chromosome:20:5522807:5522900:-1 | intergenic |
sblock8496 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.38/0.53 | 19/25/0.08 | 0.3 0.0 0.0 1.3 | 0.0 0.0 0.5 0.0 | 3 81 2 3 | 0 0 0 0 | 1 4 1 2 | 0 0 0 0 | 15 27 37 16 | 8 2 -13 6 | 5arm 5arm 5arm_loop_3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.33 0.42 0.42 0.21 | 3 3 4 2 | 99 | 5 | 4 | 9 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------UGCAAAU------------------------------------------------------------ | 90 | novel | ||||
| seed | --------------------------------------CCGAGAA-------------------------------------------------- | 2 | novel | ||||
| seed | -----------------AGCAAGU----------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------GAGUUGU--------------------------- | 2 | novel | ||||
| seed | --------------------------UGUGCAA-------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------GAGCAAG------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------------CUGAGUU----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------GTGCAAATACTCCGAGAAA------------------------------------------------- | 19 | 3 | 2 | - | 2 | 81 | |
| ----------------GAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 24 | - | - | - | - | 2 | |
| ------------------------------------------------------------TGAGTTGTCCAGTTGCGTG---------------- | 19 | - | - | 1 | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAAT------------------------------------------------ | 20 | - | 1 | - | - | - | |
| ---------------AGAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| ----------------------------------------------------------TCTGAGTTGTCCAGTTGCGTG---------------- | 21 | - | - | - | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAATG----------------------------------------------- | 21 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTCT---------------------------------- | 24 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTC----------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------ATGTGCAAATACTCCGAGAAA------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | ctgcttaccagggcaagagcaagtaatGTGCAAATACTCCGAGAAAtgcaagcagctttctgagttgtccagttgcgtgcagactccaggaagag | ||||||
| *********************************************************************************************** | |||||||
| --------------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||||||
| rat | ...(((.((.(((.....(((.((((((..((...((((.((((..((....))..)))).))))))..)).)))).)))....))).))))).. | 0.430 -22.40 | |||||
| rat | chromosome:4:119286374:119286468:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
sblock8508 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.38/0.53 | 19/25/0.08 | 0.3 0.0 0.0 1.3 | 0.0 0.0 0.5 0.0 | 3 81 2 3 | 0 0 0 0 | 1 4 1 2 | 0 0 0 0 | 15 27 37 16 | 8 2 -13 6 | 5arm 5arm 5arm_loop_3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.33 0.42 0.42 0.21 | 3 3 4 2 | 99 | 5 | 4 | 9 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------UGCAAAU------------------------------------------------------------ | 90 | novel | ||||
| seed | --------------------------------------CCGAGAA-------------------------------------------------- | 2 | novel | ||||
| seed | -----------------AGCAAGU----------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------GAGUUGU--------------------------- | 2 | novel | ||||
| seed | --------------------------UGUGCAA-------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------GAGCAAG------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------------CUGAGUU----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------GTGCAAATACTCCGAGAAA------------------------------------------------- | 19 | 3 | 2 | - | 2 | 81 | |
| ----------------GAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 24 | - | - | - | - | 2 | |
| ------------------------------------------------------------TGAGTTGTCCAGTTGCGTG---------------- | 19 | - | - | 1 | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAAT------------------------------------------------ | 20 | - | 1 | - | - | - | |
| ---------------AGAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| ----------------------------------------------------------TCTGAGTTGTCCAGTTGCGTG---------------- | 21 | - | - | - | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAATG----------------------------------------------- | 21 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTCT---------------------------------- | 24 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTC----------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------ATGTGCAAATACTCCGAGAAA------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | ctgcttaccagggcaagagcaagtaatGTGCAAATACTCCGAGAAAtgcaagcagctttctgagttgtccagttgcgtgcagactccaggaagag | ||||||
| *********************************************************************************************** | |||||||
| rat | ...(((.((.(((.....(((.((((((..((...((((.((((..((....))..)))).))))))..)).)))).)))....))).))))).. | 0.430 -22.40 | |||||
| rat | chromosome:4:119338416:119338510:-1 | intergenic |
sblock8739 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.181 | no | no | 0.42/0.62 | 18/25/0.50 | 1.0 0.0 0.0 0.0 | 2.4 0.0 0.0 0.0 | 26 2 19 2 | 0 0 0 0 | 2 2 7 1 | 0 0 0 0 | 0 15 30 25 | 25 19 2 4 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.21 0.35 0.18 0.21 | 1 6 2 3 | 84 | 7 | 1 | -2 |
| reads | miRBase family seed | ||||||||
| seed | -------------------------------CCAAUCU-------------------------------------------------------------------- | 40 | novel | ||||||
| seed | -GAACUGC-------------------------------------------------------------------------------------------------- | 20 | novel | ||||||
| seed | ------GCUAAUU--------------------------------------------------------------------------------------------- | 8 | novel | ||||||
| seed | --AACUGCU------------------------------------------------------------------------------------------------- | 5 | novel | ||||||
| seed | -----------------------------AUCCAAU---------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ---------------------------CUAUCCA------------------------------------------------------------------------ | 2 | novel | ||||||
| seed | ---------------------------------------------------------------CAGAGGG------------------------------------ | 2 | novel | ||||||
| seed | ----------------GACACCG----------------------------------------------------------------------------------- | 2 | novel | ||||||
| seed | ------------------------------------CUUUGUC--------------------------------------------------------------- | 1 | novel | ||||||
| seed | ----CUGCUAA----------------------------------------------------------------------------------------------- | 1 | novel | ||||||
| seed | ---------------------------------------UGUCCCA------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------TCCAATCTTTGTCCCACTTGAG------------------------------------------------------ | 22 | - | - | 1 | - | - | 19 | - | |
| ------------------------------TCCAATCTTTGTCCCACTT--------------------------------------------------------- | 19 | 4 | 1 | 1 | - | 2 | 4 | 1 | |
| GGAACTGCTAATTGGTGAC--------------------------------------------------------------------------------------- | 19 | 2 | - | - | - | - | 11 | - | |
| GGAACTGCTAATTGGTGACAC------------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 6 | - | |
| ------------------------------TCCAATCTTTGTCCCACTTGAGCCC--------------------------------------------------- | 25 | - | - | - | - | - | 5 | - | |
| -GAACTGCTAATTGGTGACAC------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 5 | - | |
| -----TGCTAATTGGTGACACCGAGTTCT----------------------------------------------------------------------------- | 24 | - | - | - | - | - | 4 | - | |
| -----TGCTAATTGGTGACACCGAGT-------------------------------------------------------------------------------- | 21 | - | - | - | - | - | 2 | - | |
| --------------------------TCTATCCAATCTTTGTCCC------------------------------------------------------------- | 19 | 2 | - | - | - | - | - | - | |
| --------------------------------------------------------------TCAGAGGGATCCTGGGTTG------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ------------------------------TCCAATCTTTGTCCCACT---------------------------------------------------------- | 18 | - | - | - | 1 | - | 1 | - | |
| -----TGCTAATTGGTGACACCGA---------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ---------------TGACACCGAGTTCTATCCAA----------------------------------------------------------------------- | 20 | - | - | 1 | - | - | 1 | - | |
| GGAACTGCTAATTGGTGACA-------------------------------------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| --------------------------------------TTGTCCCACTTGAGCCCGGTG----------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| ---ACTGCTAATTGGTGACACC------------------------------------------------------------------------------------ | 19 | - | - | - | - | - | 1 | - | |
| -----------------------------------TCTTTGTCCCACTTGAGCCCGGTGG---------------------------------------------- | 25 | - | - | - | - | - | 1 | - | |
| ----------------------------TATCCAATCTTTGTCCCACTTGAG------------------------------------------------------ | 24 | - | - | - | - | 1 | - | - | |
| ----------------------------TATCCAATCTTTGTCCCAC----------------------------------------------------------- | 19 | - | - | - | - | 1 | - | - | |
| rat | GGAACTGCTAATTGGTGACACcgagttctaTCCAATCTTTGTCCCACTTGAGcccggtggcctcagagggatcctgggttggccttagatgtcccaggatagggtt | ||||||||
| ********************************************************************************************************** | |||||||||
| rat | ..((((.(((.((((.((((......((((.(((((((..(((((.((.(((((....))).)))).)))))...)))))))...))))))))))))..))))))) | 0.860 -34.90 | |||||||
| rat | chromosome:4:164237579:164237684:-1 | intergenic |
sblock8974 [novel_lenNOK_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.541 | no | no | 0.38/0.53 | 19/25/0.08 | 0.3 0.0 0.0 1.3 | 0.0 0.0 0.5 0.0 | 3 81 2 3 | 0 0 0 0 | 1 4 1 2 | 0 0 0 0 | 15 27 37 16 | 8 2 -13 6 | 5arm 5arm 5arm_loop_3arm 3arm | 3 3 3 3 | nd nd nd nd | 0.33 0.42 0.42 0.21 | 3 3 4 2 | 99 | 5 | 4 | 9 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------UGCAAAU------------------------------------------------------------ | 90 | novel | ||||
| seed | --------------------------------------CCGAGAA-------------------------------------------------- | 2 | novel | ||||
| seed | -----------------AGCAAGU----------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------------------------------------------------------GAGUUGU--------------------------- | 2 | novel | ||||
| seed | --------------------------UGUGCAA-------------------------------------------------------------- | 1 | novel | ||||
| seed | ----------------GAGCAAG------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------------------------------------------CUGAGUU----------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| ---------------------------GTGCAAATACTCCGAGAAA------------------------------------------------- | 19 | 3 | 2 | - | 2 | 81 | |
| ----------------GAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 24 | - | - | - | - | 2 | |
| ------------------------------------------------------------TGAGTTGTCCAGTTGCGTG---------------- | 19 | - | - | 1 | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAAT------------------------------------------------ | 20 | - | 1 | - | - | - | |
| ---------------AGAGCAAGTAATGTGCAAATACTCC------------------------------------------------------- | 25 | - | - | - | - | 1 | |
| ----------------------------------------------------------TCTGAGTTGTCCAGTTGCGTG---------------- | 21 | - | - | - | - | 1 | |
| ---------------------------GTGCAAATACTCCGAGAAATG----------------------------------------------- | 21 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTCT---------------------------------- | 24 | - | - | - | - | 1 | |
| -------------------------------------TCCGAGAAATGCAAGCAGCTTTC----------------------------------- | 23 | - | - | - | - | 1 | |
| -------------------------ATGTGCAAATACTCCGAGAAA------------------------------------------------- | 21 | - | - | - | 1 | - | |
| rat | ctgcttaccagggcaagagcaagtaatGTGCAAATACTCCGAGAAAtgcaagcagctttctgagttgtccagttgcgtgcagactccaggaagag | ||||||
| *********************************************************************************************** | |||||||
| rat | ...(((.((.(((.....(((.((((((..((...((((.((((..((....))..)))).))))))..)).)))).)))....))).))))).. | 0.430 -22.40 | |||||
| rat | chromosome:4:119376832:119376926:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH (15 loci)
block1470213 [novel_lenNOK_cloningOK_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.35/0.47 | 18/25/0.46 | 0.0 3.4 | 0.0 1.7 | 1 7 | 0 0 | 1 2 | 0 0 | 33 5 | -19 3 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.30 0.30 | 3 3 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------AGGAUUC---------------- | 5 | novel | |
| seed | -----------------------------------------ACCUUGA------------------------ | 5 | novel | |
| seed | ----------------------------------ACAAGAU------------------------------- | 1 | novel | |
| seed | ------------------------------------------CCUUGAU----------------------- | 1 | novel | |
| seed | ----------------------------------------------GAUAGGA------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------------TAGGATTCAGTTGTGCCCT----- | 19 | 1 | 4 | |
| ----------------------------------------TACCTTGATAGGATTCAGTTGTG--------- | 23 | - | 3 | |
| ----------------------------------------TACCTTGATAGGATTCAGTTGTGC-------- | 24 | - | 1 | |
| -----------------------------------------ACCTTGATAGGATTCAGTTGTG--------- | 22 | 1 | - | |
| ----------------------------------------TACCTTGATAGGATTCAG-------------- | 18 | - | 1 | |
| ---------------------------------TACAAGATACCTTGATAGGA------------------- | 20 | - | 1 | |
| ---------------------------------------------TGATAGGATTCAGTTGTGCCCTAAC-- | 25 | - | 1 | |
| rat | aggacaggacaccctcattcctgccagggtggctacaagaTACCTTGATAGGATTCAGTTGTGCCCTaactg | |||
| ************************************************************************ | ||||
| rat | .....(((.(((.((...(((((.(((((((.((...)).))))))).)))))...))..))).)))..... | 0.970 -20.80 | ||
| rat | chromosome:3:76971636:76971707:1 | intergenic |
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