other hairpins
novel_lenNOK_cloningOK_multiarm_5varHIGH (15 loci)
sblock9344 [novel_lenNOK_cloningOK_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.102 | no | no | 0.32/0.42 | 18/23/0.07 | 1.2 0.0 0.0 0.0 1.5 | 2.0 0.0 0.0 0.5 1.5 | 5 1 1 6 2 | 0 0 0 0 0 | 2 1 1 1 1 | 0 0 0 0 0 | 1 16 20 30 22 | 27 16 12 1 6 | 5arm 5arm 5arm 3arm 3arm | 2 2 2 2 2 | nd nd nd nd nd | 0.26 0.37 0.42 0.28 0.37 | 3 4 4 2 4 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------------------------GGAUUAA----------------------------------------- | 6 | novel | ||
| seed | --AGUCACU------------------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | -----CACUCUC--------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------CUUUACC--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------AAAAACA------------------------------------ | 1 | novel | ||
| seed | -----------------------------------------------------------------AACAGGC--------------------------------- | 1 | novel | ||
| seed | ---------------------ACCUAUU----------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| --------------------------------------------------------TGGATTAAAAACAGGCATG------------------------------ | 19 | - | - | 3 | |
| --------------------------------------------------------TGGATTAAAAACAGGCAT------------------------------- | 18 | - | - | 3 | |
| ----TCACTCTCTTGTTCTTTAC---------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| -TAGTCACTCTCTTGTTCTT------------------------------------------------------------------------------------- | 19 | - | - | 2 | |
| ----------------TCTTTACCTATTCTGCTGT---------------------------------------------------------------------- | 19 | - | - | 1 | |
| -TAGTCACTCTCTTGTTCTTTACC--------------------------------------------------------------------------------- | 23 | - | 1 | - | |
| --------------------TACCTATTCTGCTGTTTAA------------------------------------------------------------------ | 19 | 1 | - | - | |
| -------------------------------------------------------------TAAAAACAGGCATGTAAGG------------------------- | 19 | - | - | 1 | |
| ----------------------------------------------------------------AAACAGGCATGTAAGGCAA---------------------- | 19 | - | - | 1 | |
| rat | gTAGTCACTCTCTTGTTCTTTACCTATTCTGCTGTTTAAtgaagagtccatgtgaaTGGATTAAAAACAGGCATGTAAGGCAAtactcacaaggaaaagtgtcta | ||||
| ********************************************************************************************************* | |||||
| rat | .(((.((((.((((((...((.(((....((((((((.......(((((((....)))))))..)))))).))....))).)).....))))))...)))).))) | 0.970 -23.80 | |||
| rat | chromosome:5:75290306:75290410:-1 | intergenic |
sblock9347 [novel_lenNOK_cloningOK_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.754 | no | no | 0.26/0.55 | 19/23/0.40 | 0.8 0.0 1.2 0.0 0.0 0.0 | 1.2 0.0 1.8 0.0 0.0 0.0 | 5 1 6 1 1 9 | 0 0 0 0 0 0 | 2 1 1 1 1 2 | 0 0 0 0 0 0 | 26 48 30 22 16 4 | 0 -16 0 17 24 36 | 5arm 5arm_loop_3arm 3arm 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.25 0.40 0.36 0.50 0.47 0.32 | 2 5 3 4 4 2 | 25 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------------------------------------AAGAAUG--------------- | 11 | novel | ||
| seed | ----------------------------------------------------------------GAGAUUC--------------------------------------------- | 4 | novel | ||
| seed | ---------------------------CAUUUCA---------------------------------------------------------------------------------- | 3 | novel | ||
| seed | ------------------------------UUCAGUC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------AGAUUCG-------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------GCCACUG--------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------GCAACCC------------------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------GAGAUAA--------------------------- | 1 | novel | ||
| seed | ----------------------------AUUUCAG--------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------GAAGAAU---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------------------------------------TAAGAATGTGGTCGATTGG---- | 19 | 1 | 9 | - | |
| --------------------------TCATTTCAGTCCTCAGAGTG---------------------------------------------------------------------- | 20 | - | 3 | - | |
| ---------------------------------------------------------------TGAGATTCGAGTGAAGAAT---------------------------------- | 19 | - | 3 | - | |
| -----------------------------TTTCAGTCCTCAGAGTGCCTGCA---------------------------------------------------------------- | 23 | - | - | 1 | |
| ---------------------------------------------------------------------------------------------TAAGAATGTGGTCGATTGGGCTT | 23 | - | 1 | - | |
| --------------------------------------------------------------------------TGAAGAATGAGATAAGTACT---------------------- | 20 | - | 1 | - | |
| ---------------------------CATTTCAGTCCTCAGAGTG---------------------------------------------------------------------- | 19 | - | 1 | - | |
| ---------------------------------------------------------------------------------TGAGATAAGTACTAAGAAT---------------- | 19 | - | 1 | - | |
| ---------------------------------------------------------------TGAGATTCGAGTGAAGAATGAGA------------------------------ | 23 | - | 1 | - | |
| ----------------------------------------------------------------GAGATTCGAGTGAAGAATGAGA------------------------------ | 22 | - | 1 | - | |
| ---------------------------------------------------------TGCCACTGAGATTCGAGTGAAG------------------------------------- | 22 | - | 1 | - | |
| ------------------------------------------------TGCAACCCTTGCCACTGAGA------------------------------------------------ | 20 | - | 1 | - | |
| rat | cttgtctttcattttctgccgccagcTCATTTCAGTCCTCAGAGTGcctgcaacccttgccacTGAGATTCGAGTGAAGAATgagataagtacTAAGAATGTGGTCGATTGGgctt | ||||
| ******************************************************************************************************************** | |||||
| rat | ((.(((..((((.((((...((...(((((((((.((.((..((((...(((.....)))))))..))...)).))))..)))))....))....)))).))))..))).)).... | 0.930 -24.20 | |||
| rat | chromosome:5:75291465:75291580:-1 | intergenic |
sblock9964 [novel_lenNOK_cloningOK_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.928 | no | no | 0.47/0.74 | 18/22/0.20 | 1.8 0.0 0.0 0.0 | 1.2 1.0 0.0 0.0 | 5 3 1 1 | 0 0 0 0 | 3 2 1 1 | 0 0 0 0 | 1 13 21 2 | 17 7 4 22 | 5arm 5arm 3arm 3arm | 8 9 13 18 | nd nd nd nd | 0.40 0.36 0.28 0.32 | 5 5 3 2 | 10 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------ACGCGGA---------------------------------------------------------------------------- | 3 | novel | ||||
| seed | --------------AGCCAGC---------------------------------------------------------------------- | 3 | novel | ||||
| seed | --CAUUGAA---------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | -----------------------------------------------------------------------CAAGCAA------------- | 1 | novel | ||||
| seed | -----------------------------------------------------CACAGCU------------------------------- | 1 | novel | ||||
| seed | -----UGAACGC------------------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T5S1 | |||
| -------AACGCGGAGCCAGCTCTC------------------------------------------------------------------ | 18 | - | 1 | - | 2 | - | |
| -------------GAGCCAGCTCTCGGGGGTC----------------------------------------------------------- | 19 | - | - | 1 | - | 1 | |
| ----TTGAACGCGGAGCCAGCTC-------------------------------------------------------------------- | 19 | 1 | - | - | - | - | |
| ----------------------------------------------------GCACAGCTGGGCCTACAC--------------------- | 18 | - | - | 1 | - | - | |
| -------------GAGCCAGCTCTCGGGGGTCTCT-------------------------------------------------------- | 22 | - | - | 1 | - | - | |
| -TCATTGAACGCGGAGCCAGC---------------------------------------------------------------------- | 20 | 1 | - | - | - | - | |
| ----------------------------------------------------------------------GCAAGCAACCATGTCTAAG-- | 19 | - | - | - | - | 1 | |
| rat | cTCATTGAACGCGGAGCCAGCTCTCGGGGGTCTCTgtgtggtctcgtcatcaGCACAGCTGGGCCTACACGCAAGCAACCATGTCTAAGgg | ||||||
| ******************************************************************************************* | |||||||
| .....................................................................................>>>>>>>>>>>>>>>> | ENSRNOT00000007637 ENSRNOG00000005811 LOC689955 | ||||||
| rat | (((.(((.(((.((.....(((..((.(((((((((((((((......)))).)))))..))))))...))..)))..)).))).)))))) | 0.730 -24.20 | |||||
| rat | chromosome:6:35427405:35427495:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000007637|ENSRNOG00000005811 ## intergenic ## ENSRNOG00000005811|pseudogene|LOC689955| |
sblock12621 [novel_lenNOK_cloningOK_multiarm_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.175 | no | no | 0.45/0.67 | 18/22/0.45 | 1.3 2.1 0.0 0.0 | 2.3 2.1 0.0 0.0 | 6 11 1 2 | 0 0 0 0 | 4 6 1 2 | 0 0 0 0 | 0 8 41 35 | 33 17 -6 3 | 5arm 5arm 5arm_loop_3arm 3arm | 4 8 8 14 | nd nd nd nd | 0.19 0.10 0.30 0.37 | 3 1 5 4 | 20 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------UGGCUGC----------------------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ----UUAACUG---------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | -GUCUUAA------------------------------------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ----------------------------------------------------------------GGCAAGC---------------------------------------------- | 2 | novel | |||||
| seed | --------------CUGGCUG------------------------------------------------------------------------------------------------ | 2 | novel | |||||
| seed | --UCUUAAC------------------------------------------------------------------------------------------------------------ | 2 | novel | |||||
| seed | ---------UGGUCCU----------------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------CUGUGCU----------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------UGCUGUG------------------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------GCUGUGC------------------------------------------------------------------------------------------ | 1 | novel | |||||
| seed | ------------------------------------------UGGAUUC-------------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| --------------CTGGCTGCTGTGCTCTCTGTCC--------------------------------------------------------------------------------- | 22 | - | 2 | - | 2 | - | - | |
| ---------------------------------------------------------------AGGCAAGCTCCAAAGTTGC----------------------------------- | 19 | - | - | - | 1 | 1 | - | |
| --------CTGGTCCTGGCTGCTGTGCTC---------------------------------------------------------------------------------------- | 21 | - | - | 1 | - | - | - | |
| ---CTTAACTGGTCCTGGCTG------------------------------------------------------------------------------------------------ | 18 | - | - | 1 | - | - | - | |
| -------------------TGCTGTGCTCTCTGTCCT-------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| --------------------GCTGTGCTCTCTGTCCTG------------------------------------------------------------------------------- | 18 | 1 | - | - | - | - | - | |
| -GTCTTAACTGGTCCTGGCT------------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| ---CTTAACTGGTCCTGGCTGC----------------------------------------------------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| ------------------CTGCTGTGCTCTCTGTCCTG------------------------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | |
| -------------CCTGGCTGCTGTGCTCTCTG------------------------------------------------------------------------------------ | 20 | - | - | - | - | - | 1 | |
| -----------------------------------------TTGGATTCTCTGAGGCATGT-------------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| --------------CTGGCTGCTGTGCTCTCTG------------------------------------------------------------------------------------ | 19 | - | - | - | - | 1 | - | |
| AGTCTTAACTGGTCCTGG--------------------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| -------------CCTGGCTGCTGTGCTCTC-------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | |
| AGTCTTAACTGGTCCTGGC-------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -GTCTTAACTGGTCCTGGCTGC----------------------------------------------------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| rat | AGTCTTAACTGGTCCTGGCTGCTGTGCTCTCTGTCCTGccgTTGGATTCTCTGAGGCATGTtcAGGCAAGCTCCAAAGTTGCgacatggtgagcacagggtcggggggccgggcgga | |||||||
| ********************************************************************************************************************* | ||||||||
| rat | ..(((...((((((((((((.((((((((.((((..(((..(((((((.((((((.....)))))).))..)))))....)))..)))).))))))))))))..))))))))..))) | 0.750 -46.00 | ||||||
| rat | chromosome:9:112725333:112725449:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH (15 loci)
block204068 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.075 | no | no | 0.47/0.61 | 18/25/0.35 | 0.0 1.3 0.0 | 0.0 1.8 0.0 | 1 12 1 | 0 0 0 | 1 1 1 | 0 0 0 | 15 20 33 | 0 -13 -19 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 2 2 2 | nd nd nd | 0.42 0.37 0.35 | 3 3 3 | 17 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----------------------CAGCUUU------------------------------------------ | 9 | novel | ||
| seed | -----------------------------CCUGCGG----------------------------------- | 3 | novel | ||
| seed | ---------------------UCAGCUU------------------------------------------- | 2 | novel | ||
| seed | -----------------------AGCUUUC----------------------------------------- | 1 | novel | ||
| seed | ----------------GCAAUUC------------------------------------------------ | 1 | novel | ||
| seed | ----------------------------------GGUGUUG------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T5S1 | T5S2 | |||
| ---------------------TCAGCTTTCCTGCGGTGTT------------------------------- | 19 | - | 6 | - | |
| --------------------TTCAGCTTTCCTGCGGTGTT------------------------------- | 20 | - | 2 | - | |
| ---------------------TCAGCTTTCCTGCGGTGTTGGTT--------------------------- | 23 | - | 2 | - | |
| ----------------------------TCCTGCGGTGTTGGTTGCT------------------------ | 19 | - | 2 | - | |
| ---------------------------------CGGTGTTGGTTGCTGAGGTG------------------ | 20 | - | - | 1 | |
| ----------------------------TCCTGCGGTGTTGGTTGC------------------------- | 18 | - | 1 | - | |
| ----------------------CAGCTTTCCTGCGGTGTTGGTTGCT------------------------ | 25 | - | 1 | - | |
| ---------------TGCAATTCAGCTTTCCTGC------------------------------------- | 19 | 1 | - | - | |
| ---------------------TCAGCTTTCCTGCGGTGTTG------------------------------ | 20 | - | 1 | - | |
| rat | cagctgcgttcgggctgcaaTTCAGCTTTCCTGCGGTGTTGGTTGCTgaggtggccccgagagcatcctgt | ||||
| *********************************************************************** | |||||
| rat | (((.(((.((((((((((...(((((...((.((...)).))..))))).))))))).))).)))..))). | 1.000 -28.20 | |||
| rat | chromosome:12:44297945:44298015:-1 | intergenic |
block209235 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.858 | no | no | 0.37/0.56 | 18/24/0.69 | 0.0 1.7 | 0.0 0.0 | 16 7 | 0 0 | 2 2 | 0 0 | 13 25 | 2 -9 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.38 0.39 | 3 4 | 29 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------AAACCUG-------------------------------------------------------- | 21 | novel | ||
| seed | ------------------------------CAAAUCC---------------------------------------- | 5 | novel | ||
| seed | --------------------------GAAUCAA-------------------------------------------- | 3 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -------------TAAACCTGTGCATGAATCAAATCC---------------------------------------- | 24 | 1 | - | 16 | |
| -------------TAAACCTGTGCATGAATCA--------------------------------------------- | 19 | - | - | 4 | |
| -----------------------------TCAAATCCGGTCACCCAGA----------------------------- | 19 | - | - | 4 | |
| -------------------------TGAATCAAATCCGGTCACCCAGA----------------------------- | 23 | - | - | 3 | |
| -----------------------------TCAAATCCGGTCACCCAG------------------------------ | 18 | - | 1 | - | |
| rat | tctgggtaattaaTAAACCTGTGCATGAATCAAATCCggtcacccagatgaaggtgtatgtgggagctgccttagga | ||||
| ***************************************************************************** | |||||
| rat | ((((((((.((......(((..(((((.(((..(((.((....)).)))...))).)))))))))).))))).))). | 0.450 -13.40 | |||
| rat | chromosome:12:5624811:5624887:1 | intergenic |
block868175 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.556 | no | no | 0.50/0.61 | 18/23/0.36 | 0.0 0.0 0.5 2.2 | 0.5 0.0 0.0 3.5 | 2 1 2 6 | 0 0 0 0 | 1 1 2 2 | 0 0 0 0 | 3 13 18 23 | 11 5 -1 -14 | 5arm 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 1 | nd nd nd nd | 0.41 0.39 0.42 0.44 | 4 3 3 6 | 11 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ----GACAUGA---------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------CAGUGAG-------------------------------------------- | 2 | novel | ||
| seed | ---------------------------UGAGCAG----------------------------------------- | 2 | novel | ||
| seed | --------------------GGGACAG------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------GGUAAGG----------------------------------- | 1 | novel | ||
| seed | --------------------------GUGAGCA------------------------------------------ | 1 | novel | ||
| seed | -------------------AGGGACA------------------------------------------------- | 1 | novel | ||
| seed | --------------CGACCAG------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T5S1 | |||
| --------------------------GTGAGCAGGTAAGGGAACACTCC-------------------------- | 23 | - | 2 | - | |
| ---AGACATGACTACGACCAGGGA--------------------------------------------------- | 21 | - | 1 | - | |
| --------------------------------AGGTAAGGGAACACTCCT------------------------- | 18 | 1 | - | - | |
| ---AGACATGACTACGACCAGGGAC-------------------------------------------------- | 22 | - | 1 | - | |
| -------------ACGACCAGGGACAGTGAG-------------------------------------------- | 18 | 1 | - | - | |
| -----------------------ACAGTGAGCAGGTAAGGGA--------------------------------- | 19 | - | 1 | - | |
| ------------------CAGGGACAGTGAGCAGGTA-------------------------------------- | 19 | - | 1 | - | |
| -------------------AGGGACAGTGAGCAGGTA-------------------------------------- | 18 | - | - | 1 | |
| -------------------------AGTGAGCAGGTAAGGGAAC------------------------------- | 19 | - | 1 | - | |
| -----------------------ACAGTGAGCAGGTAAGGG---------------------------------- | 18 | - | 1 | - | |
| rat | ctcAGACATGACTACGACCAGGGACAGTGAGCAGGTAAGGGAACACTCCTggcttgggggaggggggttttgggg | ||||
| *************************************************************************** | |||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000028474 ENSRNOG00000020956 Bcat2 | ||||
| rat | ((((((.((..((....(((((..(((.(((...((......)).)))))).))))).....))..)))))))). | 1.000 -19.80 | |||
| rat | chromosome:1:96042702:96042776:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000028474|ENSRNOG00000020956 ## ENSRNOG00000020956|protein_coding|Bcat2|Branched-chain-amino-acid aminotransferase, mitochondrial precursor (EC 2.6.1.42) (BCAT(m)). [Source:UniProtKB/Swiss-Prot;Acc:O35854] |
block1029627 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.53/0.83 | 18/23/0.42 | 0.0 3.6 | 0.0 2.2 | 1 11 | 0 0 | 1 6 | 0 0 | 21 25 | 9 -9 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.33 0.39 | 3 5 | 12 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ---------------------------------GUCCACA----------------------------------------------------- | 3 | novel | |||||
| seed | --------------------------------------CAGACUC------------------------------------------------ | 3 | novel | |||||
| seed | --------------------------------CGUCCAC------------------------------------------------------ | 1 | novel | |||||
| seed | ----------------------CCGCCGC---------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------CGCCGCC------------------------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------GACUCGG---------------------------------------------- | 1 | novel | |||||
| seed | ---------------------------------------AGACUCG----------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------ACAGACU------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S2 | T3S1 | T3S2 | T4S1 | T5S1 | |||
| -------------------------------------ACAGACTCGGTAAGACACC------------------------------------- | 19 | - | - | - | 2 | 1 | - | |
| --------------------------------CGTCCACAGACTCGGTAAGAC---------------------------------------- | 21 | - | - | - | 3 | - | - | |
| ---------------------TCCGCCGCCGCCGTCCAC------------------------------------------------------ | 18 | - | - | 1 | - | - | - | |
| ---------------------------------------AGACTCGGTAAGACACCG------------------------------------ | 18 | - | - | - | 1 | - | - | |
| ------------------------------------CACAGACTCGGTAAGACAC-------------------------------------- | 19 | - | - | 1 | - | - | - | |
| -------------------------CCGCCGCCGTCCACAGACTCGGT--------------------------------------------- | 23 | - | 1 | - | - | - | - | |
| --------------------------------------CAGACTCGGTAAGACACC------------------------------------- | 18 | - | - | - | - | - | 1 | |
| -------------------------------CCGTCCACAGACTCGGTAAGA----------------------------------------- | 21 | 1 | - | - | - | - | - | |
| rat | gctcggactcagctcgctcatTCCGCCGCCGCCGTCCACAGACTCGGTAAGACACCGggagggcagcgctgcggcaccgccctgaactgggcg | |||||||
| ********************************************************************************************* | ||||||||
| rat | ((((((..((((...((.....((((.((.((.((((.....((((((.....)))))).)))).)))).))))....)).)))).)))))). | 0.480 -36.80 | ||||||
| rat | chromosome:1:205851503:205851595:1 | intergenic |
block1066859 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.326 | no | no | 0.35/0.45 | 19/25/0.30 | 0.0 4.2 | 0.0 6.1 | 2 8 | 0 0 | 1 2 | 0 0 | 42 20 | -16 -11 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.74 0.40 | 13 3 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------CUAUACC----------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------------ACCUUCU------------------------------------- | 2 | novel | |
| seed | -------------------------------------------GACCUCU---------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------CUCAUUU-------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------UCUCAUU--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------------------------------------------TCTATACCTTCTCATTTGC------------------------------ | 19 | - | 2 | |
| ------------------------------------------TGACCTCTATACCTTCTCA----------------------------------- | 19 | - | 2 | |
| --------------------------------------------------------TCTCATTTGCATTGGCACCT-------------------- | 20 | - | 2 | |
| ---------------------------------------------------TACCTTCTCATTTGCATTGGCACCT-------------------- | 25 | 1 | 1 | |
| -------------------------------------------------------TTCTCATTTGCATTGGCAC---------------------- | 19 | - | 1 | |
| -----------------------------------------------TCTATACCTTCTCATTTGCA----------------------------- | 20 | - | 1 | |
| rat | acgaagggctcagtgtgggtgagggcactgcttgtcggctttTGACCTCTATACCTTCTCATTTGCATTGGCACCTatccccagcttggcccagcg | |||
| ************************************************************************************************ | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000038623 ENSRNOG00000028243 NP_001103047.1 | |||
| rat | .((..(((((.(((.((((.(((((...((((.....((...(((.............)))...))...))))))).))))))))).)))))..)) | 0.420 -28.82 | ||
| rat | chromosome:20:13186966:13187061:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000038623|ENSRNOG00000028243 ## ENSRNOG00000028243|protein_coding|NP_001103047.1| |
block1203173 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.069 | no | no | 0.45/0.75 | 18/24/0.31 | 3.0 3.3 0.0 0.4 | 2.0 2.8 0.0 1.0 | 4 6 1 5 | 0 0 0 0 | 2 2 1 2 | 0 0 0 0 | 10 21 34 38 | 15 2 -3 -12 | 5arm 5arm 5arm_loop 5arm_loop_3arm | 1 1 1 1 | 33 21 15 10 | 0.42 0.32 0.47 0.50 | 6 3 4 6 | 16 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ----------------------------------------CGCACAG-------------------------------------------------------- | 3 | novel | |
| seed | ---------------------------GACCGGC--------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------GCGCACA--------------------------------------------------------- | 2 | novel | |
| seed | ----------------------AGCAAGA-------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------CAUCCAA--------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------CCCAGCG------------------------------------------------------------- | 1 | novel | |
| seed | -----------------UCCAAAG------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------CACAUCC----------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------AAGACCG----------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------CCGGCAC------------------------------------------------------------------- | 1 | novel | |
| seed | -----------GACACAU------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ---------------------------------------GCGCACAGCAGGTGAGAC---------------------------------------------- | 18 | - | 3 | |
| --------------------------AGACCGGCACCCAGCGCAC---------------------------------------------------------- | 19 | 2 | - | |
| ---------------------AAGCAAGACCGGCACCCAGC-------------------------------------------------------------- | 20 | 2 | - | |
| ----------------ATCCAAAGCAAGACCGGCA-------------------------------------------------------------------- | 19 | 1 | - | |
| --------------------------------------AGCGCACAGCAGGTGAGAC---------------------------------------------- | 19 | - | 1 | |
| --------------ACATCCAAAGCAAGACCG----------------------------------------------------------------------- | 18 | 1 | - | |
| ------------ACACATCCAAAGCAAGACC------------------------------------------------------------------------ | 19 | - | 1 | |
| ----------AGACACATCCAAAGCAAGAC------------------------------------------------------------------------- | 20 | 1 | - | |
| ----------------------------------ACCCAGCGCACAGCAGGTG-------------------------------------------------- | 19 | 1 | - | |
| --------------------------------------AGCGCACAGCAGGTGAGACTGACA----------------------------------------- | 24 | 1 | - | |
| ----------------------------ACCGGCACCCAGCGCACAGC------------------------------------------------------- | 20 | - | 1 | |
| ------------------------CAAGACCGGCACCCAGCGC------------------------------------------------------------ | 19 | - | 1 | |
| rat | gctagctctcAGACACATCCAAAGCAAGACCGGCACCCAGCGCACAGCAGGTGAGACTGACAatggcagggggcgggtttcggggagacactgatgagatagc | |||
| ******************************************************************************************************* | ||||
| >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000028642 ENSRNOG00000021100 Tnfaip8l2 | |||
| rat | ((((.(((((((.....(((......(((((.((.(((...((.((.(((......)))....))))..))))).)))))...)))....)))).))).)))) | 1.000 -36.30 | ||
| rat | chromosome:2:190047332:190047434:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000028642|ENSRNOG00000021100 ## ENSRNOG00000021100|protein_coding|Tnfaip8l2|Tumor necrosis factor, alpha-induced protein 8-like protein 2. [Source:UniProtKB/Swiss-Prot;Acc:Q6AYJ8] |
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