other hairpins
novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH (15 loci)
block2140257 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.035 | no | no | 0.38/0.55 | 18/24/0.58 | 2.0 0.0 | 4.3 1.3 | 21 3 | 0 0 | 6 1 | 0 0 | 17 32 | -4 -13 | 5arm_loop 5arm_loop_3arm | 1 1 | nd nd | 0.32 0.50 | 2 5 | 33 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | ----------------------CCAAGCA--------------------------------------------------------- | 10 | novel | |||||
| seed | ------------------AGAUCCA------------------------------------------------------------- | 9 | novel | |||||
| seed | --------------------AUCCAAG----------------------------------------------------------- | 4 | novel | |||||
| seed | ---------------------------------CUAAAUU---------------------------------------------- | 3 | novel | |||||
| seed | -------------------------AGCACCA------------------------------------------------------ | 2 | miR-29a/29b/29c | |||||
| seed | ---------------GAUAGAU---------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------GGGGGAU-------------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------CAAGCAC-------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------GCACCAU----------------------------------------------------- | 1 | novel | |||||
| seed | ----------------AUAGAUC--------------------------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T5S1 | T5S2 | |||
| ---------------------TCCAAGCACCATCTAAATTCACAC----------------------------------------- | 24 | 2 | - | - | - | 6 | 1 | |
| -----------------TAGATCCAAGCACCATCTA-------------------------------------------------- | 19 | - | - | 1 | 2 | 5 | - | |
| -------------------GATCCAAGCACCATCTAAA------------------------------------------------ | 19 | - | - | - | - | 4 | - | |
| ------------------------AAGCACCATCTAAATTCACAC----------------------------------------- | 21 | - | - | - | - | 2 | - | |
| -----------------TAGATCCAAGCACCATCT--------------------------------------------------- | 18 | - | - | - | - | 1 | - | |
| --------------GGATAGATCCAAGCACCATCT--------------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| -------------------------AGCACCATCTAAATTCACAC----------------------------------------- | 20 | - | - | - | - | 1 | - | |
| ---------------GATAGATCCAAGCACCATCT--------------------------------------------------- | 20 | - | 1 | - | - | - | - | |
| ----------TGGGGGATAGATCCAAGCACCA------------------------------------------------------ | 22 | - | - | - | - | - | 1 | |
| --------------------------------TCTAAATTCACACGGAGGAA---------------------------------- | 20 | - | - | - | - | 1 | - | |
| --------------------------------TCTAAATTCACACGGAGGA----------------------------------- | 19 | - | - | - | - | 1 | - | |
| ---------------------TCCAAGCACCATCTAAATTCA-------------------------------------------- | 21 | - | - | - | - | 1 | - | |
| --------------------------------TCTAAATTCACACGGAGGAAAG-------------------------------- | 22 | - | - | - | - | 1 | - | |
| ----------------------CCAAGCACCATCTAAATTCACAC----------------------------------------- | 23 | - | - | - | - | 1 | - | |
| rat | gagctggccttgggggaTAGATCCAAGCACCATCTAAATTCACACggaggaaagagggcacagcgggtctgttcagagagccactt | |||||||
| ************************************************************************************** | ||||||||
| rat | (((.(((((((...((((((((((..((.((.(((...(((.....)))...))))))).....)))))))))).))).))))))) | 1.000 -29.50 | ||||||
| rat | chromosome:7:96033506:96033591:-1 | intergenic |
block2191221 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.615 | no | no | 0.32/0.43 | 19/25/0.33 | 1.6 0.0 0.0 | 0.2 0.0 2.0 | 9 2 2 | 0 0 0 | 2 1 2 | 0 0 0 | 26 24 12 | -18 -8 -2 | 5arm_loop_3arm 3arm_loop 3arm_loop | 3 3 7 | nd nd nd | 0.61 0.53 0.38 | 13 7 3 | 15 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------GACUACU------------------------------------------ | 4 | novel | |||
| seed | ---------------------------GGAUGAC---------------------------------------------- | 3 | novel | |||
| seed | --------------------------------ACUACUG----------------------------------------- | 3 | novel | |||
| seed | --------------------------------------------ACACUAU----------------------------- | 2 | novel | |||
| seed | --------------------------------------GACACUA----------------------------------- | 2 | novel | |||
| seed | -----------------------------AUGACUA-------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T2S2 | T5S1 | |||
| ------------------------------TGACTACTGACACTACACT------------------------------- | 19 | - | - | - | 4 | |
| -------------------------------GACTACTGACACTACACTA------------------------------ | 19 | 1 | - | - | 2 | |
| --------------------------TGGATGACTACTGACACTACACT------------------------------- | 23 | - | - | - | 3 | |
| -------------------------------------TGACACTACACTATTTAAC------------------------ | 19 | - | - | - | 2 | |
| ----------------------------GATGACTACTGACACTACACT------------------------------- | 21 | - | - | - | 1 | |
| -------------------------------------------TACACTATTTAACCCTTGCTTCCCA------------ | 25 | - | 1 | - | - | |
| -------------------------------------------TACACTATTTAACCCTTGCTT---------------- | 21 | - | - | 1 | - | |
| rat | ggtgctggccataaggctaggtttctTGGATGACTACTGACACTACACTATTTAACccttgcttcccatgccttcttcct | |||||
| ******************************************************************************** | ||||||
| rat | ((....(((....((((..((((...(((.((.............)))))...))))...)))).....))).....)). | 0.460 -12.92 | ||||
| rat | chromosome:7:19449963:19450042:1 | intergenic |
block2089692 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.591 | no | no | 0.32/0.43 | 19/25/0.33 | 1.6 0.0 0.0 | 0.2 0.0 2.0 | 9 2 2 | 0 0 0 | 2 1 2 | 0 0 0 | 26 24 12 | -18 -8 -2 | 5arm_loop_3arm 3arm_loop 3arm_loop | 3 3 7 | nd nd nd | 0.61 0.53 0.38 | 13 7 3 | 15 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | -------------------------------GACUACU------------------------------------------ | 4 | novel | |||
| seed | ---------------------------GGAUGAC---------------------------------------------- | 3 | novel | |||
| seed | --------------------------------ACUACUG----------------------------------------- | 3 | novel | |||
| seed | --------------------------------------------ACACUAU----------------------------- | 2 | novel | |||
| seed | --------------------------------------GACACUA----------------------------------- | 2 | novel | |||
| seed | -----------------------------AUGACUA-------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T2S2 | T5S1 | |||
| ------------------------------TGACTACTGACACTACACT------------------------------- | 19 | - | - | - | 4 | |
| -------------------------------GACTACTGACACTACACTA------------------------------ | 19 | 1 | - | - | 2 | |
| --------------------------TGGATGACTACTGACACTACACT------------------------------- | 23 | - | - | - | 3 | |
| -------------------------------------TGACACTACACTATTTAAC------------------------ | 19 | - | - | - | 2 | |
| ----------------------------GATGACTACTGACACTACACT------------------------------- | 21 | - | - | - | 1 | |
| -------------------------------------------TACACTATTTAACCCTTGCTTCCCA------------ | 25 | - | 1 | - | - | |
| -------------------------------------------TACACTATTTAACCCTTGCTT---------------- | 21 | - | - | 1 | - | |
| rat | ggtgctggccataaggctaggtttttTGGATGACTACTGACACTACACTATTTAACccttgcttcccatgccttcttcct | |||||
| ******************************************************************************** | ||||||
| rat | ((....(((....((((..((((...(((.((.............)))))...))))...)))).....))).....)). | 0.520 -12.92 | ||||
| rat | chromosome:7:17804896:17804975:-1 | intergenic |
block208862 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.451 | no | no | 0.32/0.56 | 18/26/0.58 | 3.6 0.0 0.0 0.9 | 3.2 0.0 0.0 0.6 | 16 3 1 7 | 0 0 0 0 | 4 1 1 5 | 0 0 0 0 | 0 15 25 30 | 15 3 0 -12 | 5arm 5arm 5arm 5arm_loop_3arm | 1 1 1 1 | nd nd nd nd | 0.39 0.60 0.72 0.50 | 3 12 12 6 | 43 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ----------------------------------AAACCCA--------------------------------------- | 10 | novel | ||||||
| seed | -GGUGCAU------------------------------------------------------------------------ | 9 | novel | ||||||
| seed | ---------AGUGAAU---------------------------------------------------------------- | 7 | novel | ||||||
| seed | -------------------------------CCCAAAC------------------------------------------ | 4 | novel | ||||||
| seed | ----GCAUUAG--------------------------------------------------------------------- | 4 | novel | ||||||
| seed | --------UAGUGAA----------------------------------------------------------------- | 3 | novel | ||||||
| seed | ----------------UCCUAAG--------------------------------------------------------- | 3 | novel | ||||||
| seed | ------------GAAUUCC------------------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------GAAAUCC----------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S1 | T5S1 | T5S2 | |||
| TGGTGCATTAGTGAATTCCT------------------------------------------------------------ | 20 | 1 | - | - | - | 1 | 7 | - | |
| ---------------------------------CAAACCCAGCTCTCTCGTTG--------------------------- | 20 | 1 | - | - | 1 | - | 5 | 1 | |
| --------TAGTGAATTCCTAAGGATGA---------------------------------------------------- | 20 | - | 1 | - | - | - | 3 | - | |
| ------------------------------TCCCAAACCCAGCTCTCTCGTTGGA------------------------- | 25 | 1 | - | 1 | - | - | 2 | - | |
| ---TGCATTAGTGAATTCCTAAG--------------------------------------------------------- | 20 | - | - | - | - | - | 3 | - | |
| --------TAGTGAATTCCTAAGGAT------------------------------------------------------ | 18 | - | - | - | - | - | 3 | - | |
| ---------------TTCCTAAGGATGAAATCCCAAACCC---------------------------------------- | 25 | - | - | - | - | - | 3 | - | |
| -------TTAGTGAATTCCTAAGGAT------------------------------------------------------ | 19 | - | - | - | - | - | 2 | - | |
| -----------TGAATTCCTAAGGATGAAA-------------------------------------------------- | 19 | 1 | 1 | - | - | - | - | - | |
| ---------------------------------CAAACCCAGCTCTCTCGTT---------------------------- | 19 | - | - | - | - | - | 1 | - | |
| ---TGCATTAGTGAATTCCTA----------------------------------------------------------- | 18 | - | - | - | - | - | 1 | - | |
| ---------------------------------CAAACCCAGCTCTCTCGTTGGATCCT--------------------- | 26 | - | - | - | - | - | 1 | - | |
| -------TTAGTGAATTCCTAAGGATGA---------------------------------------------------- | 21 | - | - | - | - | - | 1 | - | |
| -------------------------TGAAATCCCAAACCCAGC------------------------------------- | 18 | - | 1 | - | - | - | - | - | |
| rat | TGGTGCATTAGTGAATTCCTAAGGATGAAATCCCAAACCCAGCTCTCTCGTTGgatccttacatgttctccccagactag | ||||||||
| ******************************************************************************** | |||||||||
| rat | ((((........((((...(((((((............(((((......))))))))))))...)))).......)))). | 0.550 -14.16 | |||||||
| rat | chromosome:12:5606940:5607019:1 | intergenic |
block233521 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.47/0.61 | 18/25/0.35 | 0.0 1.3 0.0 | 0.0 1.8 0.0 | 1 12 1 | 0 0 0 | 1 1 1 | 0 0 0 | 32 37 50 | 0 -13 -19 | 5arm 5arm_loop_3arm 5arm_loop_3arm | 2 2 2 | nd nd nd | 0.42 0.37 0.35 | 3 3 3 | 17 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------------------------CAGCUUU------------------------------------------------- | 9 | novel | ||
| seed | ----------------------------------------------CCUGCGG------------------------------------------ | 3 | novel | ||
| seed | --------------------------------------UCAGCUU-------------------------------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------GGUGUUG------------------------------------- | 1 | novel | ||
| seed | ---------------------------------GCAAUUC------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------AGCUUUC------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T5S1 | T5S2 | |||
| --------------------------------------TCAGCTTTCCTGCGGTGTT-------------------------------------- | 19 | - | 6 | - | |
| --------------------------------------TCAGCTTTCCTGCGGTGTTGGTT---------------------------------- | 23 | - | 2 | - | |
| -------------------------------------TTCAGCTTTCCTGCGGTGTT-------------------------------------- | 20 | - | 2 | - | |
| ---------------------------------------------TCCTGCGGTGTTGGTTGCT------------------------------- | 19 | - | 2 | - | |
| ---------------------------------------------TCCTGCGGTGTTGGTTGC-------------------------------- | 18 | - | 1 | - | |
| --------------------------------------TCAGCTTTCCTGCGGTGTTG------------------------------------- | 20 | - | 1 | - | |
| ---------------------------------------CAGCTTTCCTGCGGTGTTGGTTGCT------------------------------- | 25 | - | 1 | - | |
| --------------------------------TGCAATTCAGCTTTCCTGC-------------------------------------------- | 19 | 1 | - | - | |
| --------------------------------------------------CGGTGTTGGTTGCTGAGGTG------------------------- | 20 | - | - | 1 | |
| rat | gctctgacaagtattttcggctgcgttcgggctgcaaTTCAGCTTTCCTGCGGTGTTGGTTGCTgaggtggccccgagagagtcctgtcctgggg | ||||
| *********************************************************************************************** | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||||
| rat | .(((.(((.((.((((((.....((...(((((((...(((((...((.((...)).))..))))).))))))))).)))))).)))))..))). | 0.880 -31.50 | |||
| rat | chromosome:12:43045086:43045180:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block1094275 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.415 | no | no | 0.50/0.65 | 18/26/0.22 | 0.0 3.2 | 0.0 5.2 | 14 11 | 0 0 | 4 5 | 0 0 | 8 17 | 5 -18 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.32 0.57 | 3 9 | 32 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | ---------GGUCAGU------------------------------------------------------ | 17 | novel | ||||||
| seed | ------------------ACGGCUU--------------------------------------------- | 5 | novel | ||||||
| seed | ------------CAGUUUA--------------------------------------------------- | 3 | novel | ||||||
| seed | -------------------------CCGAACG-------------------------------------- | 3 | novel | ||||||
| seed | ------------------------UCCGAAC--------------------------------------- | 2 | novel | ||||||
| seed | -------------AGUUUAC-------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------GGCUUCC------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S2 | T4S2 | T5S1 | T5S2 | |||
| --------TGGTCAGTTTACGGCTTCC------------------------------------------- | 19 | 2 | - | 1 | - | - | 14 | - | |
| -----------TCAGTTTACGGCTTCCGAAC--------------------------------------- | 20 | - | - | - | 1 | - | 2 | - | |
| -----------------TACGGCTTCCGAACGGACA---------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ------------CAGTTTACGGCTTCCGAAC--------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -------------------CGGCTTCCGAACGGACACTCCAC---------------------------- | 23 | - | - | - | - | - | 1 | - | |
| -----------------TACGGCTTCCGAACGGACACTCCAC---------------------------- | 25 | - | 1 | - | - | - | - | - | |
| -----------------------TTCCGAACGGACACTCCAC---------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------TACGGCTTCCGAACGGACACTCC------------------------------ | 23 | - | - | - | - | - | - | 1 | |
| ------------------------TCCGAACGGACACTCCACGGCAGAGG-------------------- | 26 | - | - | - | - | - | - | 1 | |
| ------------------------TCCGAACGGACACTCCAC---------------------------- | 18 | - | - | - | - | 1 | - | - | |
| ------------------------TCCGAACGGACACTCCACG--------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------TACGGCTTCCGAACGGACAC--------------------------------- | 20 | - | - | 1 | - | - | - | - | |
| -----------------------TTCCGAACGGACACTCCACG--------------------------- | 20 | - | - | - | - | - | 1 | - | |
| rat | gagggtccTGGTCAGTTTACGGCTTCCgaacggacactccacggcagaggcctaactacacaacactgtc | ||||||||
| ********************************************************************** | |||||||||
| rat | ((.(((..((((.((((...((((((....((.........))...)))))).)))))).))..))).)) | 0.940 -16.90 | |||||||
| rat | chromosome:20:5565480:5565549:1 | intergenic |
block1470322 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.33/0.58 | 18/24/0.55 | 0.0 4.8 | 0.0 4.2 | 1 10 | 0 0 | 1 2 | 0 0 | 43 35 | -9 -18 | 5arm_loop_3arm 3arm | 1 1 | nd nd | 0.56 0.32 | 5 3 | 11 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------GGUUCAU------------------------------------------------------------- | 4 | novel | |
| seed | ------------------------------------------------------UCUGAUU------------------------------------------------------ | 2 | novel | |
| seed | --------------------------------------------------------------CUUCUGU---------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------ACUGGUU---------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------------CUGAUUU----------------------------------------------------- | 1 | miR-29a* | |
| seed | ---------------------------------------------------------GAUUUCU--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ----------------------------------------------TGGTTCATTCTGATTTCTTCTGTG--------------------------------------------- | 24 | 1 | 1 | |
| -------------------------------------------------------------TCTTCTGTGCCTGCTCGTC----------------------------------- | 19 | - | 2 | |
| -----------------------------------------------------TTCTGATTTCTTCTGTGCC------------------------------------------- | 19 | - | 2 | |
| ------------------------------------------------------TCTGATTTCTTCTGTGCCTGCTC-------------------------------------- | 23 | - | 1 | |
| -------------------------------------------TACTGGTTCATTCTGATT------------------------------------------------------ | 18 | - | 1 | |
| ----------------------------------------------TGGTTCATTCTGATTTCTTCT------------------------------------------------ | 21 | - | 1 | |
| ----------------------------------------------TGGTTCATTCTGATTTCTTCTG----------------------------------------------- | 22 | - | 1 | |
| --------------------------------------------------------TGATTTCTTCTGTGCCTGCTCGTC----------------------------------- | 24 | - | 1 | |
| rat | cgcctactatactggcattcagttctttgaaggtgggggctgcTACTGGTTCATTCTGATTTCTTCTGTGCCTGCTCGTCgcctctgagctgaattgatgatcctttgtgttggc | |||
| ******************************************************************************************************************* | ||||
| rat | .(((.((.(((..((((((((((((...((.(((((((((.((.((.((.((.....))...))...))))..)))).))))))).)))))))).)).....))..))))).))) | 0.970 -32.30 | ||
| rat | chromosome:3:76975178:76975292:1 | intergenic |
sblock4357 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.047 | no | no | 0.35/0.58 | 19/24/0.67 | 0.0 0.5 3.3 1.5 3.2 | 0.0 0.0 2.5 1.5 2.7 | 1 2 11 2 6 | 0 0 0 0 0 | 1 2 3 1 3 | 0 0 0 0 0 | 12 21 28 21 0 | 12 7 -8 0 18 | 5arm 5arm 5arm_loop_3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.33 0.45 0.62 0.36 0.37 | 3 6 9 6 4 | 30 | 7 | na | na |
| reads | miRBase family seed | ||||||||
| seed | -----------------------------GGAACCU-------------------------------------------------------------- | 11 | novel | ||||||
| seed | --------------------------------------ACUAAAG----------------------------------------------------- | 4 | novel | ||||||
| seed | -----------------------------------------------------------------------AGAACUA-------------------- | 3 | novel | ||||||
| seed | -----------------------------------------------------------------------------AGGCAAG-------------- | 2 | novel | ||||||
| seed | -----------------------CCCUCUG-------------------------------------------------------------------- | 1 | novel | ||||||
| seed | -------------------------------AACCUAU------------------------------------------------------------ | 1 | novel | ||||||
| seed | ------------------------------------------------------------------------------GGCAAGA------------- | 1 | miR-31 | ||||||
| seed | ----------------------UCCCUCU--------------------------------------------------------------------- | 1 | novel | ||||||
| seed | --------------------------------------------------------ACGCAAG----------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------------------GAAACGC-------------------------------------- | 1 | novel | ||||||
| seed | -------------CAGCCAC------------------------------------------------------------------------------ | 1 | novel | ||||||
| seed | -------------------------------------------AGUCAGG------------------------------------------------ | 1 | novel | ||||||
| seed | ------------------------------------AUACUAA------------------------------------------------------- | 1 | novel | ||||||
| seed | -----------------------------------------AAAGUCA-------------------------------------------------- | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S2 | T3S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------TGGAACCTATACTAAAGTCAG------------------------------------------------- | 21 | - | 1 | - | - | - | 7 | - | |
| -------------------------------------TACTAAAGTCAGGCATGAA------------------------------------------ | 19 | - | - | - | - | - | 4 | - | |
| ----------------------------TGGAACCTATACTAAAGTC--------------------------------------------------- | 19 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------------TAGGCAAGACCTCACAGCCAAC | 22 | - | - | - | - | - | 2 | - | |
| ----------------------------------------------------------------------GAGAACTAGGCAAGACCTCACAG----- | 23 | - | - | - | - | - | 2 | - | |
| -----------------------------------TATACTAAAGTCAGGCATGAAAC---------------------------------------- | 23 | - | - | - | - | - | 1 | - | |
| ------------TCAGCCACTTTCCCTCTGGAACCT-------------------------------------------------------------- | 24 | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------TGAAACGCAAGGTCAGAAGAGA------------------------ | 22 | - | - | - | - | - | 1 | - | |
| -------------------------------------------------------AACGCAAGGTCAGAAGAGAACT--------------------- | 22 | - | - | - | - | - | 1 | - | |
| ----------------------TCCCTCTGGAACCTATACT--------------------------------------------------------- | 19 | - | - | 1 | - | - | - | - | |
| ----------------------------TGGAACCTATACTAAAGTCAGGCA---------------------------------------------- | 24 | - | - | - | - | - | 1 | - | |
| ---------------------TTCCCTCTGGAACCTATACT--------------------------------------------------------- | 20 | - | - | - | - | - | 1 | - | |
| ------------------------------GAACCTATACTAAAGTCAGGCA---------------------------------------------- | 22 | - | - | - | - | - | 1 | - | |
| ------------------------------------------AAGTCAGGCATGAAACGCA------------------------------------- | 19 | - | - | - | - | 1 | - | - | |
| ----------------------------------------------------------------------GAGAACTAGGCAAGACCTCA-------- | 20 | - | - | - | 1 | - | - | - | |
| ----------------------------------------TAAAGTCAGGCATGAAACG--------------------------------------- | 19 | - | - | - | - | - | 1 | - | |
| -----------------------------------------------------------------------------AGGCAAGACCTCACAGCCA-- | 19 | - | - | - | - | - | - | 1 | |
| rat | atggctgagcagtcagccactttccctcTGGAACCTATACTAAAGTCAGGCATGAAacgcaaggtcagaagagaactaggcaagacctcacagccaac | ||||||||
| ************************************************************************************************** | |||||||||
| rat | .((((((....(((.(((...(((.(((((..((((.........(((....)))......))))))).)).)))...)))..)))....)))))).. | 0.530 -24.96 | |||||||
| rat | chromosome:15:232719:232816:-1 | intergenic |
sblock8486 [novel_lenNOK_cloningOK_multiarm_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.084 | no | no | 0.32/0.50 | 19/26/0.53 | 0.0 3.2 0.0 0.0 | 0.7 1.5 0.0 0.0 | 6 4 9 2 | 0 0 0 0 | 3 1 1 1 | 0 0 0 0 | 9 18 34 26 | 19 4 -8 -4 | 5arm 5arm 5arm_loop_3arm 3arm_loop | 1 1 1 1 | nd nd nd nd | 0.54 0.36 0.42 0.32 | 8 5 5 3 | 30 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------------GCAGUCU---------------------------------------------------------- | 10 | novel | ||
| seed | ----------CCUCUAA----------------------------------------------------------------------------------- | 8 | novel | ||
| seed | -----------------------------------------------------CUUGAGG---------------------------------------- | 2 | miR-327 | ||
| seed | -------------------ACCUUCA-------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------CUCCUCU------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------AAUAGCU--------------------------------------------------- | 2 | novel | ||
| seed | ------------------------CAUUCUU--------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------UCUUGUA------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------GUCUAAU------------------------------------------------------- | 1 | novel | ||
| seed | -------UCUCCUC-------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T3S1 | T4S2 | T5S1 | |||
| ----------------------------------TGCAGTCTAATAGCTCTCTCTTGAGG---------------------------------------- | 26 | - | - | 9 | |
| ---------TCCTCTAAATACCTTCATTCTTGT------------------------------------------------------------------- | 24 | - | - | 4 | |
| ------------------TACCTTCATTCTTGTATGCAGTCT---------------------------------------------------------- | 24 | - | - | 2 | |
| ----------------------------------------------------TCTTGAGGCTTGCTCCATCACT-------------------------- | 22 | - | - | 2 | |
| -------TCTCCTCTAAATACCTTCA-------------------------------------------------------------------------- | 19 | - | 1 | 1 | |
| ---------TCCTCTAAATACCTTCATTCTT--------------------------------------------------------------------- | 22 | - | - | 2 | |
| -----------------------------------------TAATAGCTCTCTCTTGAGG---------------------------------------- | 19 | - | - | 2 | |
| -----------------------TCATTCTTGTATGCAGTCT---------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------TTCTTGTATGCAGTCTAATAGC---------------------------------------------------- | 22 | - | - | 1 | |
| ---------TCCTCTAAATACCTTCATTCTTG-------------------------------------------------------------------- | 23 | 1 | - | - | |
| ------TTCTCCTCTAAATACCTTCA-------------------------------------------------------------------------- | 20 | - | - | 1 | |
| -------------------------------------AGTCTAATAGCTCTCTCTTGAG----------------------------------------- | 22 | - | - | 1 | |
| ----------------------------------TGCAGTCTAATAGCTCTCTC---------------------------------------------- | 20 | - | - | 1 | |
| ---------TCCTCTAAATACCTTCATTC----------------------------------------------------------------------- | 20 | - | 1 | - | |
| rat | atctaattcTCCTCTAAATACCTTCATTCTTGTaTGCAGTCTAATAGCTCTCTCTTGAGGcttgctccatcactaggtaggtgctctttctcctctagac | ||||
| **************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000057552 ENSRNOG00000037879 | ||||
| rat | .((((.............(((((....(((.(((((.(((.....(((.(((....)))))).))).))).)).))).)))))............)))). | 0.670 -16.11 | |||
| rat | chromosome:4:119283608:119283707:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000057552|ENSRNOG00000037879 ## ENSRNOG00000037879|protein_coding|| |
novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH (15 loci)
block125196 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.714 | no | no | 1.00/1.00 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 10 | -1 | 5arm_loop | 1 | nd | 0.33 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------CCGCGCG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T4S2 | |||
| ----------GCCGCGCGCCCCCCGGCC---------------------------------- | 18 | 1 | |
| rat | gccgggcaacGCCGCGCGCCCCCCGGCCcgggcccgccggcgcggccgccgcgaccctcggc | ||
| ************************************************************** | |||
| rat | ((((((...(((.(((.(((..(((((........)))))...)))))).)))...)))))) | 0.930 -33.50 |
| rat | chromosome:11:51556237:51556298:-1 | intergenic ## {Repeats: GC_rich 1 44 -1 class=Low_complexity,dust 51556271 51556289 0 class=dust,GC_rich 26 44 -1 class=Low_complexity} ## {SimpF: oe = 0.81 -1 CpG} |
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