other hairpins
novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH (15 loci)
block2218265 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.573 | no | no | 0.89/0.94 | 18/18/0.00 | 0.5 | 0.5 | 2 | 0 | 2 | 0 | 11 | -1 | 3arm | 1 | nd | 0.33 | 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------CCGGGCC---------------------- | 1 | novel | |
| seed | -------------------------------------CGGGCCG--------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T4S1 | |||
| -----------------------------------TCCGGGCCGCCCCTCCCC------------ | 18 | 1 | - | |
| ------------------------------------CCGGGCCGCCCCTCCCCG----------- | 18 | - | 1 | |
| rat | aagcagacgagtgagaaaggcaagcagttgggagcTCCGGGCCGCCCCTCCCCGcccgtatgttt | |||
| ***************************************************************** | ||||
| --------------------------------------------------------------------------- | ENSRNOT00000032862 ENSRNOG00000004603 RGD1566260_predicted | |||
| --------------------------------------------------------------------------- | ENSRNOT00000006180 ENSRNOG00000004603 RGD1566260_predicted | |||
| rat | (((((.(((.(((....(((...((.(((.((....)).))).)).)))...))).))).))))) | 0.970 -18.20 | ||
| rat | chromosome:7:61536497:61536561:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000058112|ENSRNOG00000004603 ## Opposite_strand|Intronic_coding|ENSRNOT00000006180|ENSRNOG00000004603 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000032862|ENSRNOG00000004603 ## ENSRNOG00000004603|protein_coding|RGD1566260_predicted| |
block3017434 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 1.000 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 15 | -2 | 5arm_loop | 2 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------CGCCCCC------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ---------------CCGCCCCCTCCCGCCGCCG------------------------------------- | 19 | 1 | |
| rat | gtgtgccccccttctCCGCCCCCTCCCGCCGCCGagtgtgtgtgtgagtgtgtgtgtccgtgtgtgtgtac | ||
| *********************************************************************** | |||
| rat | ((..((..........(((...(((.((((((.....))).))).)))...)))...........))..)) | 0.830 -9.60 |
| rat | chromosome:X:89411088:89411158:1 | intergenic ## {Repeats: trf 36 36 0 class=trf} |
block2494111 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.053 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 34 | -3 | 3arm_loop | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------AGCGCGG-------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ----------------------------------------------------GAGCGCGGGGCGCGGGGC---------------------------------- | 18 | 1 | |
| rat | agctgcgtcgccggcggccgcggtagaagcgccctggcccgcggcaggtgagGAGCGCGGGGCGCGGGGCagggagcggccaggcggaatacggcggggtccgc | ||
| ******************************************************************************************************** | |||
| rat | .((.((.((((((....(((((((....((.(((((.(((((.((..(((.....)))...))))))).))))).)).)))..))))....)))))).))..)) | 0.980 -56.50 |
| rat | chromosome:9:36477830:36477933:-1 | intergenic ## {SimpF: 1 Eponine, -1 Eponine} |
block543474 [novel_lenNOK_gcHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.706 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 37 | -2 | 5arm_loop | 1 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------CCCGCGG--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| -------------------------------------CCCCGCGGCGTCGGGCCG----------------------------------------------------------------- | 18 | 1 | |
| rat | cggcccggcccgcagctccccgcctccctcccgccctCCCCGCGGCGTCGGGCCGgtgcccgaatccaggcagcggccgcaggaggcgcggcggcggcggtgggcgccgcaggcgatgcc | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000020683 ENSRNOG00000015426 Purg | ||
| rat | .(((...(((.((.((..((((((.((((.(((((((((..(((((.((((((....))))))............))))).))))).)))).)).)).)))))).)).)).)))...))) | 0.790 -68.52 |
| rat | chromosome:16:62535350:62535469:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000020683|ENSRNOG00000015426 ## ENSRNOG00000015426|protein_coding|Purg|purine-rich element binding protein G Gene [Source:MGI Symbol;Acc:MGI:1922279] |
novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (15 loci)
sblock10641 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.42/0.48 | 19/21/0.33 | 1.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 12 | 20 7 | 5arm 3arm | 3 3 | nd nd | 0.32 0.33 | 3 2 | 3 | 1 | -13 | -11 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------CCAUGGC------------------------- | 1 | novel |
| seed | -ACAGGUG------------------------------------------------------------------------------ | 1 | novel |
| seed | ----GGUGUGA--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---AGGTGTGAGTGAGACATTT---------------------------------------------------------------- | 19 | 1 | |
| -----------------------------------------------------TCCATGGCTCTGAGAATGTGA------------ | 21 | 1 | |
| TACAGGTGTGAGTGAGACA------------------------------------------------------------------- | 19 | 1 | |
| rat | TACAGGTGTGAGTGAGACATTTatagtgaccatagttttagttgctgcatagcTCCATGGCTCTGAGAATGTGAtacctctgtcca | ||
| ************************************************************************************** | |||
| rat | ....((...(((((..((((((.(((...((((((((...((....))..))))..))))..))).))))))..))).))...)). | 0.510 -17.10 |
| rat | chromosome:7:17377070:17377155:-1 | intergenic |
sblock10763 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.491 | no | no | 0.42/0.48 | 19/21/0.33 | 1.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 12 | 20 7 | 5arm 3arm | 3 3 | nd nd | 0.32 0.33 | 3 2 | 3 | 1 | -13 | -11 |
| reads | miRBase family seed | ||
| seed | ------------------------------------------------------CCAUGGC------------------------- | 1 | novel |
| seed | -ACAGGUG------------------------------------------------------------------------------ | 1 | novel |
| seed | ----GGUGUGA--------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---AGGTGTGAGTGAGACATTT---------------------------------------------------------------- | 19 | 1 | |
| -----------------------------------------------------TCCATGGCTCTGAGAATGTGA------------ | 21 | 1 | |
| TACAGGTGTGAGTGAGACA------------------------------------------------------------------- | 19 | 1 | |
| rat | TACAGGTGTGAGTGAGACATTTatagtgaccatagttttagttgctgcatagcTCCATGGCTCTGAGAATGTGAtacctctgtcca | ||
| ************************************************************************************** | |||
| rat | ....((...(((((..((((((.(((...((((((((...((....))..))))..))))..))).))))))..))).))...)). | 0.510 -17.10 |
| rat | chromosome:7:19403630:19403715:-1 | intergenic |
sblock10908 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.176 | no | no | 0.45/0.59 | 19/22/0.60 | 2.7 0.0 0.0 | 0.7 0.0 0.0 | 3 1 1 | 0 0 0 | 2 1 1 | 0 0 0 | 22 17 0 | 10 12 30 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.50 0.33 0.47 | 4 3 3 | 5 | 2 | 2 | 8 |
| reads | miRBase family seed | |||
| seed | ---------------------------GCUCUUC----------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------------UCCUUUA------------------------------ | 1 | novel | |
| seed | -----------------------CCCUGCU--------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------------------------------GGGAAAG------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| --------------------------TGCTCTTCTTGGTCCCCAT------------------------------------------------------------------ | 19 | 1 | 1 | |
| -------------------------------------------------------------------------------------------TGGGAAAGGAATACCCTTGA | 20 | - | 1 | |
| ----------------------TCCCTGCTCTTCTTGGTCCCCA------------------------------------------------------------------- | 22 | - | 1 | |
| -------------------------------------------------------------------------GTCCTTTAAGGCTTGGGGTGG----------------- | 21 | - | 1 | |
| rat | catggtttgtgcctaagccaccTCCCTGCTCTTCTTGGTCCCCATatctcagttgaaagcacaactgtcttctGTCCTTTAAGGCTTGGGGTGGGAAAGGAATACCCTTGA | |||
| *************************************************************************************************************** | ||||
| rat | ((.(((.....(((...(((((.((..((.(((...((....((.....((((((......)))))).....)).))...)))))..)))))))...)))...)))..)). | 0.780 -29.60 | ||
| rat | chromosome:7:96052723:96052833:-1 | intergenic |
sblock11020 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.837 | no | no | 0.50/0.74 | 18/22/0.33 | 0.0 1.2 0.0 0.0 | 0.0 0.0 0.0 0.0 | 2 5 1 1 | 0 0 0 0 | 2 3 1 1 | 0 0 0 0 | 2 10 34 0 | 21 9 -11 14 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.50 0.45 0.72 0.33 | 4 9 5 2 | 9 | 6 | 13 | 9 |
| reads | miRBase family seed | |||||||
| seed | -----------GUAGUCC------------------------------------------------------------- | 3 | novel | |||||
| seed | ---UCGCACA--------------------------------------------------------------------- | 2 | novel | |||||
| seed | --------------GUCCCAG---------------------------------------------------------- | 2 | novel | |||||
| seed | -------------------------------------------------------------GGACACA----------- | 1 | novel | |||||
| seed | -----------------------------------CUGACCA------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T2S2 | T3S1 | T3S2 | T5S1 | |||
| ----------AGTAGTCCCAGGAGGAGCCCCC----------------------------------------------- | 22 | 3 | - | - | - | - | - | |
| -------------AGTCCCAGGAGGAGCCCCC----------------------------------------------- | 19 | - | 1 | - | - | 1 | - | |
| --GTCGCACAAGTAGTCCCA----------------------------------------------------------- | 18 | - | - | 1 | - | - | 1 | |
| ----------------------------------ACTGACCAGCTTGGAATG--------------------------- | 18 | - | - | - | 1 | - | - | |
| ------------------------------------------------------------AGGACACACGCGCTTAGGA | 19 | 1 | - | - | - | - | - | |
| rat | ctGTCGCACAAGTAGTCCCAGGAGGAGCCCCCagACTGACCAGCTTGGAATGtgggggatAGGACACACGCGCTTAGGA | |||||||
| ******************************************************************************* | ||||||||
| rat | (((.(((....((.((((.........((((((......((.....))....))))))...))))))..)))..))).. | 0.610 -19.50 | ||||||
| rat | chromosome:7:120211137:120211215:-1 | intergenic |
sblock11096 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.58/0.72 | 18/20/0.50 | 0.0 1.2 | 0.0 1.8 | 1 5 | 0 0 | 1 2 | 0 0 | 29 27 | 7 6 | 5arm 3arm | 1 1 | nd nd | 0.33 0.40 | 3 3 | 6 | 2 | -4 | -3 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------GCCUCUC------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------------CCUCUCA------------------------------------------ | 2 | novel | |
| seed | ---------------------------------------------------------------------CUCAGGG--------------------------------------- | 1 | novel | |
| seed | ------------------------------GCGCUCA------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -----------------------------------------------------------------GCCTCTCAGGGACACTACCC------------------------------ | 20 | - | 1 | |
| ----------------------------------------------------------------AGCCTCTCAGGGACACTACC------------------------------- | 20 | 1 | - | |
| -----------------------------------------------------------------GCCTCTCAGGGACACTACC------------------------------- | 19 | - | 1 | |
| -----------------------------AGCGCTCAGCGCCCAGGA-------------------------------------------------------------------- | 18 | - | 1 | |
| ----------------------------------------------------------------AGCCTCTCAGGGACACTAC-------------------------------- | 19 | 1 | - | |
| --------------------------------------------------------------------TCTCAGGGACACTACCCGCA--------------------------- | 20 | - | 1 | |
| rat | gggctcggccctcaatagtgctcagaggcAGCGCTCAGCGCCCAGGAggtgtcagctctgacccAGCCTCTCAGGGACACTACCCGCAgcctcatctctcttctcgccgggcttg | |||
| ******************************************************************************************************************* | ||||
| rat | (((((((((.......((......(((((.(((...((..(((.((((((((((....))))...))))))..)))...))...))).)))))......))....))))))))). | 0.570 -43.70 | ||
| rat | chromosome:7:142163892:142164006:-1 | intergenic |
sblock11317 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.132 | no | no | 0.50/0.60 | 18/20/0.67 | 0.0 1.5 | 0.0 0.5 | 1 2 | 0 0 | 1 2 | 0 0 | 6 0 | 5 13 | 5arm 3arm | 1 1 | nd nd | 0.35 0.35 | 2 3 | 3 | 2 | 5 | 4 |
| reads | miRBase family seed | |||
| seed | -------UGUGUGC-------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------AGCUGAA------------- | 1 | novel | |
| seed | -----------------------------------------------------UGAAGAG---------- | 1 | miR-300 | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| ----------------------------------------------------CTGAAGAGTGTGGTAGGT | 18 | 1 | - | |
| -------------------------------------------------CAGCTGAAGAGTGTGGTAGG- | 20 | - | 1 | |
| ------CTGTGTGCTTAGGTGCCCGA-------------------------------------------- | 20 | - | 1 | |
| rat | agctttCTGTGTGCTTAGGTGCCCGAgctactgagggtctaagtccgggCAGCTGAAGAGTGTGGTAGGT | |||
| ********************************************************************** | ||||
| rat | .((((.((..((..((((.((((((..((((.....))...))..)))))).))))...))..)).)))) | 0.990 -20.60 | ||
| rat | chromosome:7:80299884:80299953:1 | intergenic |
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