other hairpins
novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH (15 loci)
sblock11795 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.063 | no | no | 0.29/0.53 | 19/24/0.50 | 0.0 2.0 | 0.0 2.3 | 3 3 | 0 0 | 2 1 | 0 0 | 8 11 | 20 13 | 5arm 3arm | 1 1 | nd nd | 0.47 0.48 | 3 5 | 6 | 2 | -4 | -1 |
| reads | miRBase family seed | |||
| seed | ---------CCUAGAA---------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | ----------------------------------------------------------------------------UUUUGAU--------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------UCCCAUU--------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------TCCTAGAAGTTGGCCCTCT----------------------------------------------------------------------------------- | 19 | 1 | 2 | |
| ---------------------------------------------------------------------------TTTTTGATGCTATCTCATTCTTCA----------- | 24 | - | 2 | |
| ---------------------------------------------------------------------TTCCCATTTTTGATGCTATCTCA------------------ | 23 | - | 1 | |
| rat | ggaggtgcTCCTAGAAGTTGGCCCTCTattgctgggaggttcggagatctgtgtcctttccctgcccccTTCCCATTTTTGATGCTATCTCATTCTTCAcagtcacctct | |||
| ************************************************************************************************************** | ||||
| rat | (((((((((...((((..((((..((......((((((((..(((((.........)))))..)))....))))).....)).)))).....))))....)).))))))) | 0.830 -29.80 | ||
| rat | chromosome:8:72069956:72070065:-1 | intergenic |
sblock4289 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.457 | no | no | 0.39/0.43 | 18/23/0.33 | 3.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 8 27 | 8 4 | 5arm 3arm | 1 1 | nd nd | 0.32 0.50 | 3 4 | 3 | 2 | -6 | -8 |
| reads | miRBase family seed | |||
| seed | ----------------UAGAAUC----------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------CCUUAUA------------------------------------- | 1 | novel | |
| seed | ---------GACACAC------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| -------------------------------------------------TCCTTATAAGTGACCTTG--------------------------- | 18 | - | 1 | |
| --------AGACACACTAGAATCCACCATAC--------------------------------------------------------------- | 23 | 1 | - | |
| ---------------CTAGAATCCACCATACTAC------------------------------------------------------------ | 19 | - | 1 | |
| rat | cccctcacAGACACACTAGAATCCACCATACTACagagtggcgctgccaTCCTTATAAGTGACCTTGgaccagctctagcttgcacaggaaggg | |||
| ********************************************************************************************** | ||||
| rat | (((.((.....((..(((((.((((...((((..((..((((...))))..))....))))....)))).....)))))..)).....)).))) | 0.750 -19.90 | ||
| rat | chromosome:14:83458274:83458367:1 | intergenic |
sblock4330 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.653 | no | no | 0.67/0.79 | 18/20/0.22 | 0.0 1.5 | 0.0 2.2 | 1 8 | 0 0 | 1 5 | 0 0 | 26 5 | -7 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.58 0.32 | 8 3 | 9 | 5 | 0 | 16 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------------CCGCCAA------------------- | 4 | novel | ||||
| seed | -------------------------------------------------CCACCGC---------------------- | 3 | novel | ||||
| seed | ---------------------------GGUCCCG-------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------------------CCAACGA---------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S2 | T5S1 | T5S2 | |||
| ------------------------------------------------GCCACCGCCAACGAACCGG----------- | 19 | - | - | 1 | - | 1 | |
| ---------------------------------------------------ACCGCCAACGAACCGGGTGC------- | 20 | 2 | - | - | - | - | |
| ---------------------------------------------------ACCGCCAACGAACCGGGT--------- | 18 | - | - | - | 1 | - | |
| ------------------------------------------------GCCACCGCCAACGAACCG------------ | 18 | - | 1 | - | - | - | |
| ------------------------------------------------------GCCAACGAACCGGGTGCCG----- | 19 | 1 | - | - | - | - | |
| ---------------------------------------------------ACCGCCAACGAACCGGGTG-------- | 19 | 1 | - | - | - | - | |
| --------------------------CGGTCCCGGCAGAGCAGCC--------------------------------- | 19 | - | 1 | - | - | - | |
| rat | ctgcagcgtcaccagacgagccggagCGGTCCCGGCAGAGCAGCCgctGCCACCGCCAACGAACCGGGTGCCGcgcgg | ||||||
| ****************************************************************************** | |||||||
| rat | ((((.(((.((((...((...((..(((((...(((((........))))))))))...))...)))))).))))))) | 0.710 -31.10 | |||||
| rat | chromosome:14:111892911:111892988:1 | intergenic |
sblock4892 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.465 | no | no | 0.61/0.78 | 18/22/0.25 | 0.5 2.5 | 0.0 0.5 | 2 2 | 0 0 | 2 1 | 0 0 | 2 15 | 29 17 | 5arm 3arm | 1 1 | nd nd | 0.33 0.41 | 2 4 | 4 | 3 | -15 | -12 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------GAGACGU------------------------- | 1 | novel | ||
| seed | ----GCCACAC--------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---GGCCACA---------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -------------------------------------------------------------------------UCGGAGA------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T2S1 | T3S2 | |||
| --TGGCCACACCCCCAGTGGG----------------------------------------------------------------------------------------- | 19 | 1 | - | - | |
| ---GGCCACACCCCCAGTGGG----------------------------------------------------------------------------------------- | 18 | - | 1 | - | |
| ------------------------------------------------------------------------CTCGGAGAGACGTGCCTCAACC---------------- | 22 | - | - | 1 | |
| -----------------------------------------------------------------------------AGAGACGTGCCTCAACCC--------------- | 18 | - | - | 1 | |
| rat | gcTGGCCACACCCCCAGTGGGgtgcggatcttgagcgccccggccagacttcattggcttgcgccgccgccaCTCGGAGAGACGTGCCTCAACCCggaagtgtgagaggc | ||||
| ************************************************************************************************************** | |||||
| rat | (((...(((((..((..(((((..((..(((((((.((..((((((..((.....))..)).))))..))..)))).)))..))..)))))....))..)))))...))) | 0.960 -45.00 | |||
| rat | chromosome:16:19913547:19913656:1 | intergenic ## {SimpF: oe = 0.88 1 CpG} |
sblock5016 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.639 | no | no | 0.47/0.58 | 18/26/0.00 | 0.0 0.0 1.5 | 0.0 0.0 2.0 | 3 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 0 6 0 | 12 7 4 | 5arm 5arm 3arm | 2 3 3 | nd nd nd | 0.37 0.33 0.37 | 3 3 6 | 6 | 1 | -4 | -1 |
| reads | miRBase family seed | ||
| seed | -GCCAUGU--------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------GAUCUCA------------------ | 1 | novel |
| seed | -------------------------------------------CUCACGU--------------- | 1 | novel |
| seed | -------UUGUUUC--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| TGCCATGTTGTTTCCTGAG---------------------------------------------- | 19 | 3 | |
| ------------------------------------------TCTCACGTCCTGGAGTGCA---- | 19 | 1 | |
| ---------------------------------------TGATCTCACGTCCTGGAGTGCATCAC | 26 | 1 | |
| ------GTTGTTTCCTGAGGCCAG----------------------------------------- | 18 | 1 | |
| rat | TGCCATGTTGTTTCCTGAGGCCAGaagtgactcaagtccTGATCTCACGTCCTGGAGTGCATCAC | ||
| ***************************************************************** | |||
| rat | ....((((...((((((((..(((....(((....))))))..))))......)))).))))... | 0.980 -13.80 |
| rat | chromosome:17:17524598:17524662:-1 | intergenic |
sblock5027 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.639 | no | no | 0.47/0.58 | 18/26/0.00 | 0.0 0.0 1.5 | 0.0 0.0 2.0 | 3 1 2 | 0 0 0 | 1 1 1 | 0 0 0 | 0 6 0 | 12 7 4 | 5arm 5arm 3arm | 2 3 3 | nd nd nd | 0.37 0.33 0.37 | 3 3 6 | 6 | 1 | -4 | -1 |
| reads | miRBase family seed | ||
| seed | -GCCAUGU--------------------------------------------------------- | 3 | novel |
| seed | ----------------------------------------GAUCUCA------------------ | 1 | novel |
| seed | -------------------------------------------CUCACGU--------------- | 1 | novel |
| seed | -------UUGUUUC--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| TGCCATGTTGTTTCCTGAG---------------------------------------------- | 19 | 3 | |
| ------------------------------------------TCTCACGTCCTGGAGTGCA---- | 19 | 1 | |
| ---------------------------------------TGATCTCACGTCCTGGAGTGCATCAC | 26 | 1 | |
| ------GTTGTTTCCTGAGGCCAG----------------------------------------- | 18 | 1 | |
| rat | TGCCATGTTGTTTCCTGAGGCCAGaagtgactcaagtccTGATCTCACGTCCTGGAGTGCATCAC | ||
| ***************************************************************** | |||
| rat | ....((((...((((((((..(((....(((....))))))..))))......)))).))))... | 0.980 -13.80 |
| rat | chromosome:17:17533546:17533610:-1 | intergenic |
sblock7262 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.935 | no | no | 0.50/0.65 | 18/24/0.50 | 2.0 0.0 | 3.0 0.0 | 3 1 | 0 0 | 3 1 | 0 0 | 4 12 | 3 8 | 5arm 3arm | 1 1 | nd nd | 0.42 0.44 | 3 3 | 4 | 3 | 3 | -6 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------CGCAGCU---------------------- | 1 | novel | ||
| seed | ---------ACACGUG-------------------------------------------------------------- | 1 | novel | ||
| seed | -------CCACACG---------------------------------------------------------------- | 1 | novel | ||
| seed | -----GGCCACA------------------------------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T3S2 | |||
| --------CACACGTGTCAGGACCTTTGAGAG---------------------------------------------- | 24 | - | - | 1 | |
| ----AGGCCACACGTGTCAGGACC------------------------------------------------------ | 20 | - | 1 | - | |
| ------------------------------------------------TCGCAGCTCAGGAATTTG------------ | 18 | - | - | 1 | |
| ------GCCACACGTGTCAGGACCT----------------------------------------------------- | 19 | 1 | - | - | |
| rat | ttctAGGCCACACGTGTCAGGACCTTTGAGAGggcagtcggccaagttTCGCAGCTCAGGAATTTGaaaggattaggg | ||||
| ****************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000001625 ENSRNOG00000001214 Pfkl | ||||
| rat | .(((((.((...((..((..((.((.(((((.(((.....)))...))))).)).))..))...))...)).))))). | 0.660 -16.40 | |||
| rat | chromosome:20:11009800:11009877:1 | Same_strand|Intronic_coding|ENSRNOT00000001625|ENSRNOG00000001214 ## ENSRNOG00000001214|protein_coding|Pfkl|6-phosphofructokinase, liver type (EC 2.7.1.11) (Phosphofructokinase 1) (Phosphohexokinase) (Phosphofructo-1-kinase isozyme B) (PFK-B). [Source:UniProtKB/Swiss-Prot;Acc:P30835] |
sblock8171 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.932 | no | no | 0.52/0.61 | 18/21/0.12 | 0.0 0.0 0.0 1.2 | 0.0 0.0 0.0 0.8 | 1 1 1 5 | 0 0 0 0 | 1 1 1 4 | 0 0 0 0 | 14 21 23 15 | -4 -8 -3 3 | 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.52 0.61 0.53 0.37 | 5 8 3 3 | 8 | 5 | 7 | 3 |
| reads | miRBase family seed | ||||||
| seed | ----------------------------------------------CCAGGAA------------------------- | 2 | novel | ||||
| seed | -------------------------------------CAGUCAG---------------------------------- | 1 | novel | ||||
| seed | ----------------------CCGGAAA------------------------------------------------- | 1 | novel | ||||
| seed | -------------------------------------------GUCCCAG---------------------------- | 1 | novel | ||||
| seed | ---------------CACUAAC-------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------UCCCAGG--------------------------- | 1 | novel | ||||
| seed | ---------------------------------------------CCCAGGA-------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T2S2 | T3S1 | T3S2 | T5S2 | |||
| ---------------------------------------------CCCAGGAAGAGTACTGCA--------------- | 18 | - | - | - | 2 | - | |
| -------------------------------------------GTCCCAGGAAGAGTACTGC---------------- | 19 | 1 | - | - | - | - | |
| ------------------------------------CCAGTCAGTCCCAGGAAGA----------------------- | 19 | - | 1 | - | - | - | |
| ---------------------CCCGGAAAGCCAAACCCA--------------------------------------- | 18 | - | - | 1 | - | - | |
| ------------------------------------------AGTCCCAGGAAGAGTACTG----------------- | 19 | - | 1 | - | - | - | |
| --------------GCACTAACCCGGAAAGCCAAA------------------------------------------- | 21 | - | 1 | - | - | - | |
| --------------------------------------------TCCCAGGAAGAGTACTGC---------------- | 18 | - | - | - | - | 1 | |
| rat | gcaaccagctgtgcGCACTAACCCGGAAAGCCAAACCCAGTCAGTCCCAGGAAGAGTACTGCAtttagaacattcgca | ||||||
| ****************************************************************************** | |||||||
| rat | ((......(((((((.(((..((.(((..((........))...)))..))...)))..)))))..)).......)). | 0.670 -10.32 | |||||
| rat | chromosome:3:131250654:131250731:1 | intergenic |
sblock8440 [novel_lenNOK_multiarm_DicerNOK_5varHIGH_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.241 | no | no | 0.45/0.50 | 19/26/0.33 | 1.5 0.0 | 1.5 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 16 1 | 7 24 | 5arm 3arm | 6 7 | nd nd | 0.35 0.37 | 2 3 | 3 | 2 | 0 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------------------------------------AGGUAAG------------ | 1 | novel | |
| seed | --------------------CAGAUCA--------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------ACACAGA------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| ----------------------------------------------------------------------------------CAGGTAAGGAAAACAGCAC- | 19 | - | 1 | |
| -------------------ACAGATCACACACAGACATG--------------------------------------------------------------- | 20 | - | 1 | |
| ----------------CACACAGATCACACACAGACATGGCT------------------------------------------------------------ | 26 | 1 | - | |
| rat | gtgttggagtcagcctCACACAGATCACACACAGACATGGCTattcccactcagctcttggggttgttgttactgtggattaCAGGTAAGGAAAACAGCACt | |||
| ****************************************************************************************************** | ||||
| rat | ((((((...((.((((......((((.((((..((((..((...(((((.........)))))..))))))..))))))))..))))...))...)))))). | 0.750 -26.80 | ||
| rat | chromosome:4:101751370:101751471:-1 | intergenic |
novel_lenNOK_multiarm_randfoldOK (15 loci)
sblock10558 [novel_lenNOK_multiarm_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 2 1 | 0 0 | 31 10 | 4 25 | 5arm 3arm | 7 7 | nd nd | 0.21 0.28 | 1 4 | 3 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | --------------------------------AUCUGCC---------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------------------------------------------------------------------------------------UAUGCAC-------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T2S2 | T3S2 | |||
| -------------------------------CATCTGCCAGATTGCATAT----------------------------------------------------------------- | 19 | - | 1 | 1 | |
| ---------------------------------------------------------------------------------------ATATGCACATGAACTTCC---------- | 18 | 1 | - | - | |
| rat | ggctgatagttcatgtaactaaaagacatatCATCTGCCAGATTGCATATgcccatctagaaggggatttgatagtctgttcagagcATATGCACATGAACTTCCaaaattcagt | ||||
| ******************************************************************************************************************* | |||||
| rat | .(((((.(((((((((..........(((((..((((.(((((((((.((.(((........))).)).)).)))))))..))))..))))).)))))))))........))))) | 0.500 -33.40 | |||
| rat | chromosome:7:6475342:6475456:-1 | intergenic |
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