other hairpins
novel_multiarm_DicerNOK_5varHIGH (15 loci)
sblock5218 [novel_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.784 | no | no | 0.64/0.75 | 19/22/0.71 | 0.0 1.2 0.0 | 0.0 0.6 0.0 | 1 5 1 | 0 0 0 | 1 4 1 | 0 0 0 | 0 13 26 | 15 1 -6 | 5arm 5arm 3arm_loop | 1 1 1 | nd nd nd | 0.35 0.16 0.45 | 2 1 5 | 7 | 4 | 0 | -7 |
| reads | miRBase family seed | |||||
| seed | --------------CCGGACG----------------------------------------------------------------- | 3 | novel | |||
| seed | ----------------GGACGGG--------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------UGCAACC---------------------------------------- | 1 | novel | |||
| seed | -GAGCCGC------------------------------------------------------------------------------ | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T3S1 | T3S2 | |||
| -------------GCCGGACGGGCTTCGTACTC----------------------------------------------------- | 20 | - | 1 | 1 | 1 | |
| ---------------CGGACGGGCTTCGTACTCG---------------------------------------------------- | 19 | 2 | - | - | - | |
| --------------------------------------TTGCAACCGCTGTCGGAACCGC-------------------------- | 22 | - | 1 | - | - | |
| AGAGCCGCCCTGAGCCGGAC------------------------------------------------------------------ | 20 | - | - | 1 | - | |
| rat | AGAGCCGCCCTGAGCCGGACGGGCTTCGTACTCGggcgTTGCAACCGCTGTCGGAACCGCcctctctccacctcggtggccaaggt | |||||
| ************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000020220 ENSRNOG00000014886 LOC498796 | |||||
| rat | ...((((((..(((..(((.((((((((.((.(((.........)))..))))))...))))....)))..)))))))))...... | 0.900 -29.30 | ||||
| rat | chromosome:17:85654793:85654878:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000020220|ENSRNOG00000014886 ## ENSRNOG00000014886|protein_coding|LOC498796|Protein FAM107B. [Source:UniProtKB/Swiss-Prot;Acc:Q5U4F3] |
sblock742 [novel_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.139 | no | no | 0.45/0.50 | 19/22/0.78 | 0.0 2.4 | 0.0 4.0 | 2 7 | 0 0 | 1 5 | 0 0 | 24 24 | -2 2 | 5arm_loop 3arm | 1 1 | nd nd | 0.50 0.23 | 4 3 | 9 | 5 | 4 | 7 |
| reads | miRBase family seed | ||||||
| seed | -------------------------------------------------------CUCUCCU-------------------------------------- | 4 | novel | ||||
| seed | -------------------------AGACAAG-------------------------------------------------------------------- | 2 | novel | ||||
| seed | ----------------------------------------------------CAUCUCU----------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------------CUCCUGG------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------TCTCTCCTGGAACTCTAAGCAC------------------------ | 22 | - | 1 | 1 | 1 | - | |
| ------------------------TAGACAAGACAGGAAGTGAC-------------------------------------------------------- | 20 | - | - | - | 2 | - | |
| ---------------------------------------------------TCATCTCTCCTGGAACTCT------------------------------ | 19 | - | - | - | 2 | - | |
| ------------------------------------------------------TCTCTCCTGGAACTCTAAGC-------------------------- | 20 | 1 | - | - | - | - | |
| --------------------------------------------------------TCTCCTGGAACTCTAAGCAC------------------------ | 20 | - | - | - | - | 1 | |
| rat | tgatcacttctcgagcttttgttcTAGACAAGACAGGAAGTGACcaccccaTCATCTCTCCTGGAACTCTAAGCACgaacacagattttaagtgtttcat | ||||||
| **************************************************************************************************** | |||||||
| rat | (((.(((((.(((.((((..(((((((....((.(((..(((.......)))..))).)))))))))...)))).)))...........)))))..))). | 0.800 -20.20 | |||||
| rat | chromosome:1:129008325:129008424:-1 | intergenic |
sblock7937 [novel_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.229 | no | no | 0.42/0.62 | 19/22/0.75 | 0.0 1.7 | 0.0 3.3 | 1 3 | 0 0 | 1 3 | 0 0 | 13 2 | 0 9 | 5arm 3arm | 1 1 | nd nd | 0.29 0.27 | 2 2 | 4 | 4 | 9 | 5 |
| reads | miRBase family seed | |||||
| seed | -------------------------------------------------GAAAUGG--------------------- | 2 | novel | |||
| seed | ------------------------------------------------------GGUCUGG---------------- | 1 | novel | |||
| seed | --------------GAGCAGG-------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S2 | T4S2 | T5S1 | |||
| -----------------------------------------------------TGGTCTGGTTGAGAGAGGGGAG-- | 22 | - | 1 | - | - | |
| ------------------------------------------------TGAAATGGTCTGGTTGAGA---------- | 19 | - | - | 1 | - | |
| -------------TGAGCAGGCAGGGAGAGGAGT------------------------------------------- | 21 | 1 | - | - | - | |
| ------------------------------------------------TGAAATGGTCTGGTTGAGAGA-------- | 21 | - | - | - | 1 | |
| rat | gtgaccttgcctcTGAGCAGGCAGGGAGAGGAGTtaactgcttcagttTGAAATGGTCTGGTTGAGAGAGGGGAGct | |||||
| ***************************************************************************** | ||||||
| rat | ((..((((..(((.((.(((((..(((..(((((.....)))))..)))......))))).)))))..))))..)). | 0.790 -21.20 | ||||
| rat | chromosome:3:76933907:76933983:1 | intergenic |
sblock9411 [novel_multiarm_DicerNOK_5varHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.025 | no | no | 0.44/0.48 | 20/25/0.80 | 1.7 1.5 | 3.3 3.0 | 3 2 | 0 0 | 1 1 | 0 0 | 5 17 | 14 7 | 5arm 3arm | 1 1 | nd nd | 0.20 0.30 | 3 3 | 5 | 1 | -7 | -13 |
| reads | miRBase family seed | ||
| seed | --------GUAUGCA----------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------GAGUAUG------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ---------UAUGCAG---------------------------------------------------------------------------------------- | 1 | novel |
| seed | --------------------------------------------------------------GAAGGAA----------------------------------- | 1 | novel |
| seed | -----------------------------------------------------------------GGAAUAU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------------------------------------------TGAAGGAATATCAGGCACAG----------------------- | 20 | 1 | |
| -----TGAGTATGCAGAAGCTGAAG------------------------------------------------------------------------------- | 20 | 1 | |
| -------AGTATGCAGAAGCTGAAGTC----------------------------------------------------------------------------- | 20 | 1 | |
| --------GTATGCAGAAGCTGAAGTCACATGT----------------------------------------------------------------------- | 25 | 1 | |
| ----------------------------------------------------------------AGGAATATCAGGCACAGGCTTCT----------------- | 23 | 1 | |
| rat | gcaacTGAGTATGCAGAAGCTGAAGTCACATGTtagtttcagttagtctacagcattgtgcTGAAGGAATATCAGGCACAGGCTTCTatcatgttcagtgttgc | ||
| ******************************************************************************************************** | |||
| rat | (((((((((((((.(((((((...(((..(((((..(((((((((((.......)))).))))))).)))))..)))...)))))))..))))))))))..))) | 0.840 -30.40 |
| rat | chromosome:5:114551361:114551464:-1 | intergenic |
novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH (15 loci)
block58115 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 2 | 0 | 2 | -1 | 5arm_loop | 1 | nd | 0.35 | 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CUCCCAG------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --TCTCCCAGCGTACCTCCAGT------------------------------ | 20 | 1 | 1 | |
| rat | atTCTCCCAGCGTACCTCCAGTatctggacaattcctcctttgctggggaat | |||
| **************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000004026 ENSRNOG00000002930 NP_001100446.1 | |||
| rat | ((((.(((((((....(((((...)))))............))))))))))) | 0.680 -16.49 | ||
| rat | chromosome:10:10586988:10587039:1 | Same_strand|Intronic_coding|ENSRNOT00000004026|ENSRNOG00000002930 ## ENSRNOG00000002930|protein_coding|NP_001100446.1|periplakin [Source:RefSeq_peptide;Acc:NP_001100446] |
block122360 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.007 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 0 | -3 | 5arm_loop | 1 | nd | 0.40 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -GGCAGGU-------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| AGGCAGGTTTCACAGAGCAC-------------------- | 20 | 1 | |
| rat | AGGCAGGTTTCACAGAGCACgctctgcgattgccaacctc | ||
| **************************************** | |||
| -------------------------------------------------- | ENSRNOT00000031464 ENSRNOG00000027888 RGD1309437 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000046383 ENSRNOG00000001645 | ||
| rat | .(((((...((.(((((....))))).)))))))...... | 1.000 -15.40 |
| rat | chromosome:11:43812144:43812183:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000031464|ENSRNOG00000027888 ## Same_strand|Intronic_coding|ENSRNOT00000046383|ENSRNOG00000001645 ## Same_strand|Boundary_non-coding|ENSRNOT00000032283|ENSRNOG00000001645 ## ENSRNOG00000027888|protein_coding|RGD1309437|Uncharacterized protein C3orf26 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q5FVR6] ## ENSRNOG00000001645|protein_coding|| |
block174952 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.43/0.43 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -1 | 5arm_loop | 1 | nd | 0.35 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----GUUUAUG----------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----TGTTTATGACCTTTGCCACTGGA-------------------------- | 23 | 1 | |
| rat | cctcTGTTTATGACCTTTGCCACTGGAtaccagtggacagtgtcctgcttagg | ||
| ***************************************************** | |||
| rat | (((..((....(((..((((((((((...))))))).))).)))..))..))) | 1.000 -18.20 |
| rat | chromosome:11:84968392:84968444:1 | intergenic |
block204106 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 2 | -3 | 3arm_loop | 2 | nd | 0.32 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GAGCAGC---------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------TGAGCAGCCAGTGCTACAGGTC-- | 22 | 2 | |
| rat | cagactgctgcttcctggttgtgccTGAGCAGCCAGTGCTACAGGTCtg | ||
| ************************************************* | |||
| rat | ((((((...((...((((((((......)))))))).))....)))))) | 1.000 -21.30 |
| rat | chromosome:12:44299220:44299268:-1 | intergenic |
block233483 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 2 | -3 | 3arm_loop | 2 | nd | 0.32 | 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------GAGCAGC---------------- | 2 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| -------------------------TGAGCAGCCAGTGCTACAGGTC-- | 22 | 2 | |
| rat | cagactgctgcttcctggttgtgccTGAGCAGCCAGTGCTACAGGTCtg | ||
| ************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000056932 ENSRNOG00000037566 RGD1560398_predicted | ||
| rat | ((((((...((...((((((((......)))))))).))....)))))) | 1.000 -21.30 |
| rat | chromosome:12:43043849:43043897:1 | Same_strand|Intronic_non-coding|ENSRNOT00000056932|ENSRNOG00000037566 ## ENSRNOG00000037566|protein_coding|RGD1560398_predicted| |
block535114 [novel_shortStem_loopOverlap_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.25/0.25 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | -4 | 3arm_loop | 5 | nd | 0.35 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------UGGAUUA-------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| ------------------TTGGATTATAAAATTCTTGC-- | 20 | 1 | |
| rat | tgagcaaggaaacataatTTGGATTATAAAATTCTTGCtt | ||
| **************************************** | |||
| rat | .(((((((((...(((((....)))))....))))))))) | 1.000 -9.60 |
| rat | chromosome:16:41769221:41769260:-1 | intergenic |
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