other hairpins
novel_Multihit_shortStem_loopOverlap (14 loci)
block1641520 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.131 | no | no | 0.67/0.67 | 24/24/1.00 | 0.0 | 0.0 | 3 | 0 | 1 | 0 | 2 | -3 | 3arm_loop | 14 | nd | 0.25 | 2 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------------CACCUCC------------------ | 3 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| -------------------------------------GCACCTCCTCCCCTCAGGAGAGTC-- | 24 | 3 | |
| rat | agggcataactatgtttgacagggaagaggatttataGCACCTCCTCCCCTCAGGAGAGTCct | ||
| *************************************************************** | |||
| ------------------------------------------------------------------------- | ENSRNOT00000051405 ENSRNOG00000032252 LOC681850 | ||
| ------------------------------------------------------------------------- | ENSRNOT00000047545 ENSRNOG00000032252 LOC681850 | ||
| ------------------------------------------------------------------------- | ENSRNOT00000040942 ENSRNOG00000032252 LOC681850 | ||
| ------------------------------------------------------------------------- | ENSRNOT00000038063 ENSRNOG00000032252 LOC681850 | ||
| rat | .(((....(((...(((((..((((.((((..........)))).)))).)))))..)))))) | 0.740 -16.80 |
| rat | chromosome:4:57769136:57769198:1 | Opposite_strand|Intronic_coding|ENSRNOT00000040942|ENSRNOG00000032252 ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] |
block1759928 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.532 | no | no | 0.60/0.60 | 20/20/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -2 | 3arm_loop | 13 | nd | 0.25 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------------------AAGAGCA--------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| --------------------------------------------AAAGAGCAGCACAGCTGGCC--- | 20 | 1 | |
| rat | gattgctcaagatgtgtcctctaagaaccgaaaaagcatcatagAAAGAGCAGCACAGCTGGCCatc | ||
| ******************************************************************* | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000048737 ENSRNOG00000033326 RGD1565987_predicted | ||
| rat | (((.(((..((.(((((.((((........................))))..))))).))))).))) | 0.680 -10.66 |
| rat | chromosome:5:99787725:99787791:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000048737|ENSRNOG00000033326 ## ENSRNOG00000033326|protein_coding|RGD1565987_predicted| |
block2035230 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.194 | no | no | 0.55/0.55 | 20/20/1.00 | 0.0 | 0.0 | 2 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 48 | nd | 0.30 | 2 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------ACCAGGU---------------- | 2 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------------------------------GACCAGGTTGTCTCCTGTGA---- | 20 | 2 | |
| rat | gagggctcaataaagggcatcctgggaaatactgagGACCAGGTTGTCTCCTGTGActtc | ||
| ************************************************************ | |||
| rat | ((((.....(((..(((((.(((((.............))))).)))))..)))..)))) | 0.950 -16.72 |
| rat | chromosome:6:83978707:83978766:1 | intergenic |
block2759399 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.060 | no | no | 0.57/0.57 | 23/23/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | -4 | 3arm_loop | 11 | nd | 0.30 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------CCACUGU------------------ | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| --------------------------------CCCACTGTCTCCAAGACACACTG--- | 23 | 1 | |
| rat | atgtgtagtggtaacctggttagtgtgacagtCCCACTGTCTCCAAGACACACTGcca | ||
| ********************************************************** | |||
| rat | .((.((((((((....(((.......(((((.....))))).)))..)).)))))))) | 0.910 -16.30 |
| rat | chromosome:X:98570354:98570411:-1 | intergenic |
block2370666 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.066 | no | no | 0.48/0.48 | 21/21/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 11 | nd | 0.29 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | --------------------------------CCCAAAU----------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S1 | |||
| -------------------------------CCCCAAATTCTTGAAGTCTGG---- | 21 | 1 | |
| rat | atcatcattctagtaagaggctggaagctgaCCCCAAATTCTTGAAGTCTGGtgat | ||
| ******************************************************** | |||
| ------------------------------------------------------------------ | ENSRNOT00000009542 ENSRNOG00000006957 Gria4 | ||
| ------------------------------------------------------------------ | ENSRNOT00000009514 ENSRNOG00000006957 Gria4 | ||
| rat | (((((((..((..((((((..(((.........)))..)))))).))..))))))) | 0.490 -14.40 |
| rat | chromosome:8:1132893:1132948:1 | Opposite_strand|Intronic_coding|ENSRNOT00000009542|ENSRNOG00000006957 ## ENSRNOG00000006957|protein_coding|Gria4|Glutamate receptor 4 precursor (GluR-4) (GluR4) (GluR-D) (Glutamate receptor ionotropic, AMPA 4) (AMPA-selective glutamate receptor 4). [Source:UniProtKB/Swiss-Prot;Acc:P19493] |
block253592 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 15 | nd | 0.27 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------AGUAGCC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------CAGTAGCCAGGGATCCTAGCCA---- | 22 | 1 | |
| rat | gtagccagggatcctagccatacaacctacaaCAGTAGCCAGGGATCCTAGCCAtaca | ||
| ********************************************************** | |||
| rat | (((((..((((((((.((..(((...........)))))..)))))))).))..))). | 1.000 -14.70 |
| rat | chromosome:13:36436903:36436960:-1 | intergenic ## {Repeats: trf 268 290 0 class=trf} |
block253593 [novel_Multihit_shortStem_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.033 | no | no | 0.59/0.59 | 22/22/1.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | -2 | 3arm_loop | 15 | nd | 0.27 | 2 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------------AGUAGCC------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| --------------------------------CAGTAGCCAGGGATCCTAGCCA---- | 22 | 1 | |
| rat | gtagccagggatcctagccatacaacctacaaCAGTAGCCAGGGATCCTAGCCAtaca | ||
| ********************************************************** | |||
| rat | (((((..((((((((.((..(((...........)))))..)))))))).))..))). | 1.000 -14.70 |
| rat | chromosome:13:36436903:36436960:-1 | intergenic ## {Repeats: trf 302 324 0 class=trf} |
novel_cloningHIGH_multiarm_DicerNOK (14 loci)
sblock10509 [novel_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.046 | no | no | 0.37/0.50 | 18/24/0.82 | 0.2 0.0 | 0.0 0.0 | 138 665 | 0 0 | 4 10 | 0 0 | 25 29 | 4 6 | 5arm 3arm | 1 1 | nd nd | 0.29 0.38 | 2 5 | 1163 | 10 | 1 | 0 |
| reads | miRBase family seed | |||||||||||
| seed | -----------------------------------------------------------------UGAGACU------------------------------------------ | 870 | novel | |||||||||
| seed | --------------------------UUUGGUG--------------------------------------------------------------------------------- | 188 | novel | |||||||||
| seed | ---------------------------UUGGUGG-------------------------------------------------------------------------------- | 87 | novel | |||||||||
| seed | ----------------------------------------------------------------CUGAGAC------------------------------------------- | 12 | novel | |||||||||
| seed | ----------------------------UGGUGGC------------------------------------------------------------------------------- | 5 | novel | |||||||||
| seed | -------------------------------------------------------------------AGACUAA---------------------------------------- | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------------------------------------------------------CTGAGACTAACTCACCTGTCT----------------------------- | 21 | 360 | 305 | 1 | 2 | 2 | 3 | 2 | 1 | 2 | 1 | |
| ----------------------------------------------------------------CTGAGACTAACTCACCTG-------------------------------- | 18 | 54 | 59 | - | - | - | - | - | 1 | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCTTTGT------------------------------------------------------------------- | 22 | 60 | 44 | - | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CTGAGACTAACTCACCTGTC------------------------------ | 20 | 32 | 21 | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTTTGT------------------------------------------------------------------- | 21 | 34 | 14 | 1 | - | - | - | - | - | - | - | |
| ----------------------------------------------------------------CTGAGACTAACTCACCTGT------------------------------- | 19 | 11 | 13 | - | - | - | - | - | - | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCTT---------------------------------------------------------------------- | 19 | 13 | 10 | - | - | - | - | - | - | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCT----------------------------------------------------------------------- | 18 | 11 | 9 | - | - | - | - | - | - | - | 1 | |
| -------------------------CTTTGGTGGCTTAGTTCTTT--------------------------------------------------------------------- | 20 | 3 | 16 | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTT---------------------------------------------------------------------- | 18 | 10 | 3 | - | - | - | - | - | - | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCTTTGTG------------------------------------------------------------------ | 23 | 8 | 5 | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTTTGTG------------------------------------------------------------------ | 22 | 8 | 2 | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTTT--------------------------------------------------------------------- | 19 | 4 | 3 | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTTTGTGC----------------------------------------------------------------- | 23 | 3 | 4 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ACTGAGACTAACTCACCTG-------------------------------- | 19 | 1 | 4 | - | - | - | - | - | - | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCTTTGTGC----------------------------------------------------------------- | 24 | 3 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ACTGAGACTAACTCACCTGTC------------------------------ | 21 | - | 4 | - | - | - | - | - | - | - | - | |
| -------------------------CTTTGGTGGCTTAGTTCTTTG-------------------------------------------------------------------- | 21 | 1 | 3 | - | - | - | - | - | - | - | - | |
| ---------------------------TTGGTGGCTTAGTTCTTTGTG------------------------------------------------------------------ | 21 | 2 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ACTGAGACTAACTCACCTGTCT----------------------------- | 22 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------TTGGTGGCTTAGTTCTTTGT------------------------------------------------------------------- | 20 | 1 | 1 | - | - | - | - | - | - | - | - | |
| ---------------------------------------------------------------ACTGAGACTAACTCACCT--------------------------------- | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| ------------------------------------------------------------------GAGACTAACTCACCTGTC------------------------------ | 18 | 1 | - | - | - | - | - | - | - | - | - | |
| --------------------------TTTGGTGGCTTAGTTCTTTG-------------------------------------------------------------------- | 20 | - | 1 | - | - | - | - | - | - | - | - | |
| rat | accgacaactttgaggtggcaacagctttggtggcttagttctttgtgcttggtttgggagacaCTGAGACTAACTCACCTGTCTgttgttgctgttaaatcttaatccagagg | |||||||||||
| ****************************************************************************************************************** | ||||||||||||
| rat | .((.......((((((((((((((((...((((..((((.((((.((((((.......))).))).))))))))..)))).....))))))))).....)))))))......)) | 0.630 -35.42 | ||||||||||
| rat | chromosome:6:134409668:134409781:1 | intergenic |
sblock10599 [novel_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.566 | no | no | 0.21/0.47 | 18/25/0.76 | 0.0 1.7 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.7 0.0 1.8 0.5 0.0 0.0 0.0 | 1 3 5 4 2 1 6 26 | 0 0 0 0 0 0 0 0 | 1 1 1 2 1 1 3 5 | 0 0 0 0 0 0 0 0 | 0 4 17 22 36 51 65 6 | 47 38 30 19 11 -4 -20 18 | 5arm 5arm 5arm 5arm 5arm 5arm_loop 3arm_loop 3arm | 4 4 4 4 5 8 8 8 | nd nd nd nd nd nd nd nd | 0.68 0.37 0.42 0.44 0.33 0.53 0.43 0.20 | 10 3 8 8 2 5 6 2 | 59 | 8 | -10 | -3 |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------------------------------------------------ACCAUUU------------------ | 34 | novel | |||||||
| seed | ------------------------------------------------------------------GUGAUGA------------------------------------------- | 8 | novel | |||||||
| seed | ------------------GGUAUAG------------------------------------------------------------------------------------------- | 5 | novel | |||||||
| seed | -----------------------AGAUUAA-------------------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -----GUAACGA-------------------------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------AGGAUGG------------------------------------------------------------------------ | 2 | novel | |||||||
| seed | -UGAUGUA------------------------------------------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ----------GAGGACC--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------------GAACACU-------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------ACAAGGU--------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------------------TACCATTTCATTTCTTAATG------ | 20 | - | - | - | 1 | 3 | 1 | 26 | 2 | |
| -----------------------------------------------------------------TGTGATGAACACTGCCATACA------------------------------ | 21 | 1 | - | 1 | - | - | - | 6 | - | |
| -----------------TGGTATAGATTAATTGTAA-------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 5 | - | |
| ----------------------TAGATTAATTGTAATAGG---------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | 2 | - | |
| ----TGTAACGAGGACCTGGTATAGA------------------------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------TACAAGGTCAATGTTGTGA---------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------TACCATTTCATTTCTTAATGC----- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------TAGGATGGTGTAATGTAC-------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| TTGATGTAACGAGGACCTG------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ---------CGAGGACCTGGTATAGATT---------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TGAACACTGCCATACAAGCA-------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------TAGGATGGTGTAATGTACA------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------TAGATTAATTGTAATAGGATGGTGT--------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| rat | ttgatgtaacgaggacctggtatagattaattgtaataggatggtgtaatgtacaaggtcaatgttgtgatgaacactgccatacaagcaTACCATTTCATTTCTTAATGcttcct | |||||||||
| ******************************************************************************************************************** | ||||||||||
| rat | ...........((((...((((((((........(((..((((((((..((((...((.((.((((......)))).)))).))))...))))))))..))))))..))))))))) | 0.630 -21.90 | ||||||||
| rat | chromosome:7:17110332:17110447:-1 | intergenic |
sblock10631 [novel_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.566 | no | no | 0.21/0.47 | 18/25/0.76 | 0.0 1.7 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.7 0.0 1.8 0.5 0.0 0.0 0.0 | 1 3 5 4 2 1 6 26 | 0 0 0 0 0 0 0 0 | 1 1 1 2 1 1 3 5 | 0 0 0 0 0 0 0 0 | 0 4 17 22 36 51 65 6 | 47 38 30 19 11 -4 -20 18 | 5arm 5arm 5arm 5arm 5arm 5arm_loop 3arm_loop 3arm | 4 4 4 4 5 8 8 8 | nd nd nd nd nd nd nd nd | 0.68 0.37 0.42 0.44 0.33 0.53 0.43 0.20 | 10 3 8 8 2 5 6 2 | 59 | 8 | -10 | -3 |
| reads | miRBase family seed | |||||||||
| seed | -------------------------------------------------------------------------------------------ACCAUUU------------------ | 34 | novel | |||||||
| seed | ------------------------------------------------------------------GUGAUGA------------------------------------------- | 8 | novel | |||||||
| seed | ------------------GGUAUAG------------------------------------------------------------------------------------------- | 5 | novel | |||||||
| seed | -----------------------AGAUUAA-------------------------------------------------------------------------------------- | 4 | novel | |||||||
| seed | -----GUAACGA-------------------------------------------------------------------------------------------------------- | 2 | novel | |||||||
| seed | -------------------------------------AGGAUGG------------------------------------------------------------------------ | 2 | novel | |||||||
| seed | -UGAUGUA------------------------------------------------------------------------------------------------------------ | 1 | novel | |||||||
| seed | ----------GAGGACC--------------------------------------------------------------------------------------------------- | 1 | novel | |||||||
| seed | -----------------------------------------------------------------------GAACACU-------------------------------------- | 1 | novel | |||||||
| seed | ----------------------------------------------------ACAAGGU--------------------------------------------------------- | 1 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ------------------------------------------------------------------------------------------TACCATTTCATTTCTTAATG------ | 20 | - | - | - | 1 | 3 | 1 | 26 | 2 | |
| -----------------------------------------------------------------TGTGATGAACACTGCCATACA------------------------------ | 21 | 1 | - | 1 | - | - | - | 6 | - | |
| -----------------TGGTATAGATTAATTGTAA-------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 5 | - | |
| ----------------------TAGATTAATTGTAATAGG---------------------------------------------------------------------------- | 18 | - | 1 | - | - | - | - | 2 | - | |
| ----TGTAACGAGGACCTGGTATAGA------------------------------------------------------------------------------------------ | 22 | - | - | - | - | - | - | 2 | - | |
| ---------------------------------------------------TACAAGGTCAATGTTGTGA---------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------------------------------------------------------------TACCATTTCATTTCTTAATGC----- | 21 | - | - | - | - | - | - | 1 | - | |
| ------------------------------------TAGGATGGTGTAATGTAC-------------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| TTGATGTAACGAGGACCTG------------------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ---------CGAGGACCTGGTATAGATT---------------------------------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------------------------------------------------------TGAACACTGCCATACAAGCA-------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| ------------------------------------TAGGATGGTGTAATGTACA------------------------------------------------------------- | 19 | - | - | - | - | - | - | 1 | - | |
| ----------------------TAGATTAATTGTAATAGGATGGTGT--------------------------------------------------------------------- | 25 | - | - | - | - | - | - | 1 | - | |
| rat | ttgatgtaacgaggacctggtatagattaattgtaataggatggtgtaatgtacaaggtcaatgttgtgatgaacactgccatacaagcaTACCATTTCATTTCTTAATGcttcct | |||||||||
| ******************************************************************************************************************** | ||||||||||
| rat | ...........((((...((((((((........(((..((((((((..((((...((.((.((((......)))).)))).))))...))))))))..))))))..))))))))) | 0.630 -21.90 | ||||||||
| rat | chromosome:7:17363151:17363266:-1 | intergenic |
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