other hairpins
novel_cloningHIGH_multiarm_DicerNOK (14 loci)
sblock9952 [novel_cloningHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.50/0.68 | 18/23/0.70 | 0.0 0.2 | 1.7 1.3 | 7 42 | 0 0 | 2 3 | 0 0 | 27 28 | 3 2 | 5arm 3arm | 1 1 | nd nd | 0.22 0.15 | 2 2 | 71 | 3 | 0 | 3 |
| reads | miRBase family seed | ||||
| seed | ----------------------------------------------------------------GGCUCAG------------------------------------------- | 55 | miR-24 | ||
| seed | ----------------------------CUCGGAU------------------------------------------------------------------------------- | 7 | novel | ||
| seed | ------------------------------------------------------------------CUCAGCG----------------------------------------- | 7 | novel | ||
| seed | ---------------------------------------------------------------UGGCUCA-------------------------------------------- | 2 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T4S2 | |||
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGGGT------------------------------- | 20 | 7 | 12 | - | |
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGG--------------------------------- | 18 | 6 | 5 | - | |
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGGGTTAC---------------------------- | 23 | 7 | 2 | - | |
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGGG-------------------------------- | 19 | 3 | 3 | - | |
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGGGTTA----------------------------- | 22 | 3 | 1 | 1 | |
| -----------------------------------------------------------------GCTCAGCGGGATCTGGGTTA----------------------------- | 20 | - | 5 | - | |
| ---------------------------------------------------------------TGGCTCAGCGGGATCTGGGTT------------------------------ | 21 | 3 | 2 | - | |
| ---------------------------ACTCGGATCAAGCTGAGAG-------------------------------------------------------------------- | 19 | 2 | - | - | |
| ---------------------------ACTCGGATCAAGCTGAGAGCC------------------------------------------------------------------ | 21 | 1 | 1 | - | |
| -----------------------------------------------------------------GCTCAGCGGGATCTGGGTT------------------------------ | 19 | - | 1 | - | |
| --------------------------------------------------------------CTGGCTCAGCGGGATCTGGGTTA----------------------------- | 23 | 1 | - | - | |
| -----------------------------------------------------------------GCTCAGCGGGATCTGGGTTACT--------------------------- | 22 | - | 1 | - | |
| ---------------------------ACTCGGATCAAGCTGAGA--------------------------------------------------------------------- | 18 | 1 | - | - | |
| --------------------------------------------------------------CTGGCTCAGCGGGATCTGGGTT------------------------------ | 22 | 1 | - | - | |
| ---------------------------ACTCGGATCAAGCTGAGAGCCA----------------------------------------------------------------- | 22 | 1 | - | - | |
| ---------------------------ACTCGGATCAAGCTGAGAGCCAC---------------------------------------------------------------- | 23 | 1 | - | - | |
| rat | gtctacaatacttccactgtcttggcaactcggatcaagctgagagccacggcgtgttggagcTGGCTCAGCGGGATCTGGGTTACtgcaacatcttgtgggtgcttcttagac | ||||
| ****************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000036815 ENSRNOG00000024905 MGC94915 | ||||
| rat | (((((.......((((((((..(((.((((((((((..((((((.....((((........)))).))))))..)))))))))).)))..)))....))))).......))))) | 0.980 -43.04 | |||
| rat | chromosome:6:26016244:26016357:-1 | Same_strand|Intronic_coding|ENSRNOT00000036815|ENSRNOG00000024905 ## ENSRNOG00000024905|protein_coding|MGC94915|UPF0407 protein C2orf39 homolog. [Source:UniProtKB/Swiss-Prot;Acc:Q5XI65] |
novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (14 loci)
block2551129 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.250 | no | no | 0.37/0.58 | 19/24/0.89 | 0.0 0.0 0.0 | 0.0 0.3 0.0 | 7 13 1 | 0 0 0 | 3 4 1 | 0 0 0 | 20 30 2 | -13 -20 -4 | 5arm_loop_3arm 5arm_loop_3arm 3arm_loop | 3 4 4 | nd nd nd | 0.46 0.55 0.33 | 9 9 3 | 27 | 6 | 0 | 3 |
| reads | miRBase family seed | |||||||
| seed | -------------------------------ACCAAUU--------------------- | 17 | novel | |||||
| seed | ---------------------CCCGUGC------------------------------- | 8 | novel | |||||
| seed | ------------------CCUCCCG---------------------------------- | 1 | novel | |||||
| seed | -------------------------------------UAAACAG--------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S2 | T2S1 | T2S2 | T3S2 | T4S2 | T5S1 | |||
| ------------------------------TACCAATTAAACAGCCTGAGA-------- | 21 | - | - | - | - | 1 | 9 | |
| --------------------TCCCGTGCTGTACCAATTAAACAG--------------- | 24 | - | 1 | - | - | - | 7 | |
| ------------------------------TACCAATTAAACAGCCTGAG--------- | 20 | - | - | 1 | - | - | 4 | |
| ------------------------------TACCAATTAAACAGCCTGA---------- | 19 | 1 | - | 1 | - | - | - | |
| ------------------------------------TTAAACAGCCTGAGATTCCTG-- | 21 | - | - | - | 1 | - | - | |
| -----------------TCCTCCCGTGCTGTACCAA----------------------- | 19 | 1 | - | - | - | - | - | |
| rat | ccaggctagctaacccctccTCCCGTGCTGTACCAATTAAACAGCCTGAGAttcctggc | |||||||
| *********************************************************** | ||||||||
| --------------------------------------------------------------------- | ENSRNOT00000047326 ENSRNOG00000037286 LOC367336 | |||||||
| rat | (((((...............((.((.(((((.........))))).)).))..))))). | 0.660 -10.73 | ||||||
| rat | chromosome:9:105244166:105244224:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000047326|ENSRNOG00000037286 ## ENSRNOG00000037286|protein_coding|LOC367336| |
sblock10106 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.323 | no | no | 0.37/0.61 | 18/24/0.71 | 2.0 0.0 0.0 0.0 0.0 0.0 | 0.5 0.0 0.0 0.0 2.0 0.0 | 2 1 8 1 2 1 | 0 0 0 0 0 0 | 1 1 2 1 1 1 | 0 0 0 0 0 0 | 0 11 40 51 36 9 | 34 28 -3 -13 -5 26 | 5arm 5arm 5arm_loop 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.37 0.32 0.57 0.40 0.52 0.32 | 5 3 7 7 8 4 | 17 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------CCCAAGG----------------------------------------------------------------------- | 10 | novel | ||
| seed | -------------------------------------------------------------AGGACAU--------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------------------------------------UGAACCA-------------------- | 1 | novel | ||
| seed | -AUCUGGC--------------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------UCACUGA------------------------------------------------------------ | 1 | novel | ||
| seed | -----GGCUGAU----------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------GAAAGUU---------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T4S1 | T4S2 | T5S1 | |||
| ----------------------------------------TCCCAAGGGCCTTCACTGACT---------------------------------------------------------- | 21 | 1 | - | 8 | |
| -----------TGAAAGTTCCCTTATGGTT----------------------------------------------------------------------------------------- | 19 | 1 | - | - | |
| TATCTGGCTGATGAAAGTTCCCTT----------------------------------------------------------------------------------------------- | 24 | - | - | 1 | |
| ------------------------------------------------------------TAGGACATGAGGGGAAGAACTGA------------------------------------ | 23 | - | - | 1 | |
| ----TGGCTGATGAAAGTTCCCT------------------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| ----------------------------------------TCCCAAGGGCCTTCACTG------------------------------------------------------------- | 18 | - | - | 1 | |
| ---------------------------------------------------TTCACTGACTAGGACATGAG------------------------------------------------ | 20 | - | 1 | - | |
| -------------------------------------------------------------------------------------------TTGAACCAAAGGAGCTGAT--------- | 19 | - | - | 1 | |
| ------------------------------------------------------------TAGGACATGAGGGGAAGAA---------------------------------------- | 19 | - | - | 1 | |
| rat | tatctggctgatgaaagttcccttatggttagaaaaatccTCCCAAGGGCCTTCACTGACTaggacatgaggggaagaactgagtgaattgttgaaccaaaggagctgatggcagtgag | ||||
| *********************************************************************************************************************** | |||||
| rat | ...((.((((.....((((.((((.(((((....((.(((((.......((((((.((.......))))))))........))).)).))....))))))))))))).....)))).)) | 0.770 -29.76 | |||
| rat | chromosome:6:122565696:122565814:-1 | intergenic |
sblock10971 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.130 | no | no | 0.45/0.50 | 19/24/0.73 | 0.6 0.0 0.5 | 0.4 0.0 0.8 | 5 2 4 | 0 0 0 | 3 1 2 | 0 0 0 | 22 45 23 | 15 -9 7 | 5arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.48 0.42 0.37 | 5 5 3 | 11 | 4 | -7 | -1 |
| reads | miRBase family seed | |||||
| seed | --------------------------CUACUGU------------------------------------------------------------------------------------ | 4 | novel | |||
| seed | -------------------------------------------------------------------------GUGAGCA------------------------------------- | 3 | novel | |||
| seed | ----------------------------------------------AUCACAC---------------------------------------------------------------- | 2 | novel | |||
| seed | ---------------------------------------------------------------------------GAGCACU----------------------------------- | 1 | novel | |||
| seed | -----------------------GUUCUAC--------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T2S1 | T4S1 | T5S1 | |||
| -------------------------TCTACTGTGCAGGTTCTGGA------------------------------------------------------------------------ | 20 | - | - | 1 | 3 | |
| ------------------------------------------------------------------------TGTGAGCACTTTACCTGCT-------------------------- | 19 | 1 | - | - | 2 | |
| ---------------------------------------------TATCACACCAACAGCATCAAGCTC------------------------------------------------ | 24 | - | - | - | 2 | |
| --------------------------------------------------------------------------TGAGCACTTTACCTGCTAAG----------------------- | 20 | - | - | - | 1 | |
| ----------------------TGTTCTACTGTGCAGGTTCTG-------------------------------------------------------------------------- | 21 | - | 1 | - | - | |
| rat | acaggggacaatggtgggagtcTGTTCTACTGTGCAGGTTCTGGATATCACACCAACAGCATCAAGCTCggcTGTGAGCACTTTACCTGCTAAGcccagaaaggcctttggtacctg | |||||
| ********************************************************************************************************************* | ||||||
| rat | .((((...(((.(((.....((((..((.....((((((...((...(((((((...(((.....))).)).)))))...))..))))))..))..))))...))).)))...)))) | 0.710 -37.10 | ||||
| rat | chromosome:7:116613420:116613536:-1 | intergenic |
sblock1939 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.386 | no | no | 0.39/0.55 | 18/23/0.93 | 0.0 0.0 | 0.0 0.0 | 2 11 | 0 0 | 2 1 | 0 0 | 17 21 | 1 -3 | 5arm 3arm_loop | 1 1 | nd nd | 0.35 0.39 | 3 3 | 14 | 2 | 0 | -1 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------GACGGUA------------------------------------ | 12 | novel | |
| seed | ------------------UGCUCCU------------------------------------------------------------ | 2 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------------------------------TGACGGTATCTTTAACAGATGTG--------------------- | 23 | - | 11 | |
| -----------------GTGCTCCTGCAAAACGGATC------------------------------------------------ | 20 | 1 | 1 | |
| -----------------------------------------TGACGGTATCTTTAACAG-------------------------- | 18 | - | 1 | |
| rat | gaccactgcaactgcttgtgctcctgcaaaacggatcgcttTGACGGTATCTTTAACAGATGTGcagaacgttgcaccatgatca | |||
| ************************************************************************************* | ||||
| rat | ((.((.((((((...((((((..(((..(((...((((......))))...)))..)))..))))))...))))))...)).)). | 0.840 -18.90 | ||
| rat | chromosome:1:128292044:128292128:1 | intergenic |
sblock3530 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.713 | no | no | 0.41/0.53 | 18/26/0.89 | 0.0 0.0 | 0.0 0.0 | 12 6 | 0 0 | 7 3 | 0 0 | 10 14 | -1 -2 | 5arm_loop 3arm_loop | 1 1 | nd nd | 0.41 0.40 | 5 3 | 35 | 7 | -1 | -1 |
| reads | miRBase family seed | ||||||||
| seed | -----------CACAAUC---------------------------------------------------------- | 20 | novel | ||||||
| seed | -------------------------------------------AGCUCGG-------------------------- | 8 | novel | ||||||
| seed | ------------ACAAUCU--------------------------------------------------------- | 2 | novel | ||||||
| seed | -----------------CUGUUUU---------------------------------------------------- | 2 | novel | ||||||
| seed | --------------------------------------ACUCUAG------------------------------- | 2 | novel | ||||||
| seed | ---------CUCACAA------------------------------------------------------------ | 1 | novel | ||||||
| len | cloning frequencies | ||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S2 | T4S1 | T5S1 | |||
| ----------TCACAATCTGTTTTCTCCAGTG-------------------------------------------- | 22 | 1 | 1 | - | 1 | 1 | 1 | 12 | |
| ------------------------------------------TAGCTCGGGAATGTGTTGCT-------------- | 20 | 1 | - | - | - | - | - | 6 | |
| ----------------TCTGTTTTCTCCAGTGCCC----------------------------------------- | 19 | - | - | 1 | - | - | - | 1 | |
| -----------CACAATCTGTTTTCTCCAGTG-------------------------------------------- | 21 | - | - | - | - | - | - | 2 | |
| ----------TCACAATCTGTTTTCTCCAGTGC------------------------------------------- | 23 | - | - | - | - | - | - | 2 | |
| -------------------------------------TACTCTAGCTCGGGAATGTGT------------------ | 21 | - | - | - | - | - | - | 1 | |
| ----------TCACAATCTGTTTTCTCCAGTGCCCC---------------------------------------- | 26 | - | - | - | - | - | - | 1 | |
| -------------------------------------TACTCTAGCTCGGGAATGTG------------------- | 20 | 1 | - | - | - | - | - | - | |
| ------------------------------------------TAGCTCGGGAATGTGTTG---------------- | 18 | - | 1 | - | - | - | - | - | |
| --------CCTCACAATCTGTTTTCTCCAGTG-------------------------------------------- | 24 | - | - | - | - | - | - | 1 | |
| rat | gcaggccgccTCACAATCTGTTTTCTCCAGTGccccatactcTAGCTCGGGAATGTGTTGCTaggatgcagtctgt | ||||||||
| **************************************************************************** | |||||||||
| rat | ((((((.((.((.((((.....(((((.(((.............))).)))))...))))....)).)).)))))) | 0.540 -17.12 | |||||||
| rat | chromosome:12:20788437:20788512:1 | intergenic |
sblock3668 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.208 | no | no | 0.40/0.55 | 18/21/0.75 | 0.5 0.5 0.0 1.0 0.0 | 1.0 0.0 0.0 1.5 0.0 | 2 4 3 2 1 | 0 0 0 0 0 | 1 1 3 1 1 | 0 0 0 0 0 | 5 19 40 32 6 | 25 11 -9 -5 21 | 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.47 0.45 0.55 0.47 0.38 | 5 4 7 5 3 | 12 | 3 | 0 | 12 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------GCCACAA---------------------------------------------------------- | 3 | novel | ||
| seed | ---------------------GCCGAGU------------------------------------------------------------------------------ | 2 | novel | ||
| seed | --------------------UGCCGAG------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------------------------GGUUCUG------------------- | 1 | novel | ||
| seed | ------CAUAGGC--------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------UACAAGC--------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------CAAGCAA------------------------------------------- | 1 | novel | ||
| seed | -------AUAGGCU-------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ----------------------------------------TGCCACAAGCTAATTACAAG---------------------------------------------- | 20 | 1 | 1 | 1 | |
| -------------------TTGCCGAGTCACGTGTGAAGA------------------------------------------------------------------ | 21 | - | - | 2 | |
| --------------------TGCCGAGTCACGTGTGAAGA------------------------------------------------------------------ | 20 | - | - | 2 | |
| -------------------------------------------------------------------------------TGGTTCTGCTGATGTCTTGGG------ | 21 | - | - | 1 | |
| -------------------------------------------------------ACAAGCAAGCAGGCAGGTA-------------------------------- | 19 | - | - | 1 | |
| -----------------------------------------------------TTACAAGCAAGCAGGCAG----------------------------------- | 18 | - | - | 1 | |
| -----TCATAGGCTGCAGTTTGCC---------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| ------CATAGGCTGCAGTTTGCCGA-------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| rat | cctgaTCATAGGCTGCAGTTTGCCGAGTCACGTGTGAAGATGCCACAAGCTAATTACAAGCAAGCAGGCAGGTAcacagTGGTTCTGCTGATGTCTTGGGagaggg | ||||
| ********************************************************************************************************** | |||||
| rat | (((..((..((((..((((.....((..((((((((....((((....(((.......))).....))))..))))).)))..)).))))..))))...))..))) | 0.990 -32.20 | |||
| rat | chromosome:12:44312753:44312858:1 | intergenic |
sblock5584 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.157 | no | no | 0.36/0.58 | 18/24/0.70 | 0.0 0.0 0.0 1.0 0.0 | 2.0 0.0 1.3 0.0 3.0 | 3 2 3 14 5 | 0 0 0 0 0 | 2 1 2 4 1 | 0 0 0 0 0 | 16 25 39 52 32 | 17 11 -6 -19 2 | 5arm 5arm 5arm_loop 3arm_loop 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.32 0.32 0.39 0.55 0.33 | 2 2 3 5 4 | 33 | 5 | -12 | -7 |
| reads | miRBase family seed | ||||||
| seed | -----------------------------------------------------GUGAACA---------------------------------------------------------- | 9 | novel | ||||
| seed | -------------------------------------------------------GAACAGC-------------------------------------------------------- | 7 | novel | ||||
| seed | ---------------------------------------------------------------GGAAGAA------------------------------------------------ | 5 | novel | ||||
| seed | ----------------------------------------GGGAUCA----------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------------CUUAAGU---------------------------------------------------------------------------------------------- | 3 | novel | ||||
| seed | ------------------------------------------------------UGAACAG--------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------------GUGUCGA------------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | -----------------------------------------------------------AGCUGGA---------------------------------------------------- | 1 | novel | ||||
| seed | --------------------------------------------------------AACAGCU------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T5S1 | T5S2 | |||
| ------------------------------------------------------TGAACAGCTGGAAGAATGAG-------------------------------------------- | 20 | 1 | - | - | 6 | - | |
| ----------------------------------------------------TGTGAACAGCTGGAAGAATGAG-------------------------------------------- | 22 | - | 1 | - | 6 | - | |
| -----------------------------------------------------GTGAACAGCTGGAAGAATGAG-------------------------------------------- | 21 | - | - | - | 2 | - | |
| --------------------------------------------------------------TGGAAGAATGAGCCCCAA-------------------------------------- | 18 | - | - | - | 2 | - | |
| ----------------TCTTAAGTATGTGTCGATGAGT-------------------------------------------------------------------------------- | 22 | - | - | 1 | 1 | - | |
| ---------------------------------------TGGGATCAAGTCCTGTGAACAG--------------------------------------------------------- | 22 | - | - | - | 2 | - | |
| -------------------------TGTGTCGATGAGTTTGGGA-------------------------------------------------------------------------- | 19 | - | - | - | 2 | - | |
| --------------------------------------------------------------TGGAAGAATGAGCCCCAAGAGCAG-------------------------------- | 24 | - | - | - | 2 | - | |
| ----------------------------------------------------TGTGAACAGCTGGAAGAAT----------------------------------------------- | 19 | - | - | - | 1 | 1 | |
| ----------------------------------------------------------CAGCTGGAAGAATGAGCCC----------------------------------------- | 19 | - | - | - | 1 | - | |
| ---------------------------------------TGGGATCAAGTCCTGTGA------------------------------------------------------------- | 18 | - | - | 1 | - | - | |
| --------------------------------------------------------------TGGAAGAATGAGCCCCAAGAG----------------------------------- | 21 | - | - | - | 1 | - | |
| -------------------------------------------------------GAACAGCTGGAAGAATGAG-------------------------------------------- | 19 | - | - | - | 1 | - | |
| ----------------TCTTAAGTATGTGTCGATG----------------------------------------------------------------------------------- | 19 | - | - | - | 1 | - | |
| rat | acacgtcgctttatgctcttaagtaTGTGTCGATGAGTTTGGGATCAAGTCCTGTGAACAGCTGGAAGAATGAGCCCCAAGAGCAGcggggtgtggcagagaggggctggcgaagggt | ||||||
| ********************************************************************************************************************** | |||||||
| rat | ((...(((((....((((((..(((((..(((.((..((((((.(((..(((.((.....)).)))....)))..))))))..)).)))..))).))....)))))).)))))...)) | 0.980 -34.50 | |||||
| rat | chromosome:18:63583746:63583863:-1 | intergenic |
sblock6694 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.257 | no | no | 0.25/0.62 | 18/25/0.81 | 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 | 4 2 21 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 3 48 27 13 | 41 -6 -4 7 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 1.00 0.48 0.43 0.42 | 19 6 3 3 | 47 | 3 | 17 | 19 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------AGAAGAG---------------------------------------- | 28 | novel | ||
| seed | -------------------------------------------------------------------GAAGAGU--------------------------------------- | 4 | novel | ||
| seed | ---------------------------------------------------------------ACUAGAA------------------------------------------- | 4 | novel | ||
| seed | ----GAGAUUA------------------------------------------------------------------------------------------------------ | 4 | novel | ||
| seed | -------------------------------------------------AGGGCAG--------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------UACUAGA-------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------UGACACC----------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------UAGAAGA----------------------------------------- | 1 | novel | ||
| seed | -AAUGAGA--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------CUAGAAG------------------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| -----------------------------------------------------------------TAGAAGAGTTGTTGACACCAC--------------------------- | 21 | 3 | - | 21 | |
| ---TGAGATTATTAGAAAGGTT------------------------------------------------------------------------------------------- | 19 | - | - | 4 | |
| --------------------------------------------------------------TACTAGAAGAGTTGTTGACAC------------------------------ | 21 | - | - | 3 | |
| ------------------------------------------------------------------AGAAGAGTTGTTGACACCACG-------------------------- | 21 | - | - | 2 | |
| -----------------------------------------------------------------TAGAAGAGTTGTTGACACC----------------------------- | 19 | - | - | 2 | |
| ------------------------------------------------GAGGGCAGGAAGTTTACTAGA-------------------------------------------- | 21 | - | 2 | - | |
| ------------------------------------------------------------------AGAAGAGTTGTTGACACCA---------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------TACTAGAAGAGTTGTTGACACCAC--------------------------- | 24 | - | - | 1 | |
| ---------------------------------------------------------------ACTAGAAGAGTTGTTGACACCAC--------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------------------TAGAAGAGTTGTTGACAC------------------------------ | 18 | - | - | 1 | |
| ------------------------------------------------------------------AGAAGAGTTGTTGACACCACGGG------------------------ | 23 | - | - | 1 | |
| TAATGAGATTATTAGAAAGG--------------------------------------------------------------------------------------------- | 20 | - | - | 1 | |
| ----------------------------------------------------------------CTAGAAGAGTTGTTGACACCAC--------------------------- | 22 | - | - | 1 | |
| -----------------------------------------------------------------TAGAAGAGTTGTTGACACCACGG------------------------- | 23 | - | - | 1 | |
| -------------------------------------------------------------TTACTAGAAGAGTTGTTGACACCAC--------------------------- | 25 | - | - | 1 | |
| ----------------------------------------------------------------------------TTGACACCACGGGCAGACAGCCAC------------- | 24 | 1 | - | - | |
| rat | taatgagattattagaaaggttgaagggggcactgggctggatggttggagggcaggaagtttacTAGAAGAGTTGTTGACACCACgggcagacagccacacagagaggctct | ||||
| ***************************************************************************************************************** | |||||
| rat | ..........................(((((.((((((((..((.(((..((.(((.((.(((......))).)).)))...)).))).))..)))))...)))....))))) | 0.530 -28.20 | |||
| rat | chromosome:20:5503688:5503800:-1 | intergenic |
sblock6855 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.422 | no | no | 0.32/0.60 | 18/25/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 18 1 2 | 0 0 0 | 2 1 1 | 0 0 0 | 30 41 6 | -3 -14 15 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.55 0.50 0.33 | 4 5 3 | 28 | 2 | 0 | 15 |
| reads | miRBase family seed | |||
| seed | -------------------------------AAUUUAU---------------------------------------------------- | 23 | novel | |
| seed | -------------------------------------------------------------------CCCUGUG---------------- | 2 | novel | |
| seed | -----------------------------ACAAUUU------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------ACCUGAG----------------------------------------- | 1 | novel | |
| seed | --------------------------------AUUUAUC--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| ------------------------------CAATTTATCAAGACCTGAGT---------------------------------------- | 20 | 1 | 18 | |
| ------------------------------CAATTTATCAAGACCTGAG----------------------------------------- | 19 | - | 3 | |
| ------------------------------------------------------------------CCCCTGTGGTGTAAAATG------ | 18 | - | 2 | |
| ----------------------------TACAATTTATCAAGACCTG------------------------------------------- | 19 | - | 1 | |
| -------------------------------AATTTATCAAGACCTGAGTACAGG----------------------------------- | 24 | - | 1 | |
| -----------------------------------------GACCTGAGTACAGGCAGCAG----------------------------- | 20 | - | 1 | |
| ------------------------------CAATTTATCAAGACCTGAGTACAGG----------------------------------- | 25 | - | 1 | |
| rat | ctggcgcagtgcacaaatggaggggttttaCAATTTATCAAGACCTGAGTacaggcagcaggtggtcccctgtggtgtaaaatgtacgga | |||
| ****************************************************************************************** | ||||
| rat | (((..(((.(((((......(((((.........(((((....((((....)))).....))))).)))))...)))))...))).))). | 0.440 -21.90 | ||
| rat | chromosome:20:13196367:13196456:-1 | intergenic |
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