other hairpins
novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH (14 loci)
sblock6871 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.781 | no | no | 0.40/0.52 | 18/25/0.82 | 1.0 0.0 0.0 | 0.0 0.3 0.0 | 2 6 1 | 0 0 0 | 2 1 1 | 0 0 0 | 10 26 23 | 8 -7 -3 | 5arm 5arm_loop 3arm_loop | 1 1 1 | nd nd nd | 0.45 0.55 0.33 | 4 7 3 | 11 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ---------------------------AGAGAUA---------------------------------------------------------- | 8 | novel | |
| seed | ----------------------------------------------------CCCUUUG--------------------------------- | 1 | novel | |
| seed | -------------UCCAGUC------------------------------------------------------------------------ | 1 | novel | |
| seed | -----------AAUCCAG-------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------TAGAGATACGAAAGACCCGAG--------------------------------------------- | 21 | - | 4 | |
| --------------------------TAGAGATACGAAAGACCCGA---------------------------------------------- | 20 | - | 2 | |
| --------------------------TAGAGATACGAAAGACCCGAGGCA------------------------------------------ | 24 | - | 1 | |
| ---------------------------------------------------CCCCTTTGCGTGATATAG----------------------- | 18 | - | 1 | |
| --------------------------TAGAGATACGAAAGACCCGAGGCAG----------------------------------------- | 25 | - | 1 | |
| ------------ATCCAGTCAAGTTCTAGAGA------------------------------------------------------------ | 20 | 1 | - | |
| ----------GAATCCAGTCAAGTTCTAGAGA------------------------------------------------------------ | 22 | - | 1 | |
| rat | gcacagaccagaatccagtcaagttcTAGAGATACGAAAGACCCGAGgcagcccctttgcgtgatatagaaatgaatagactatctgtagcc | |||
| ******************************************************************************************** | ||||
| rat | (((((((..((..((...(((..(((((....((((((((..............)))).))))...))))).)))...)))).))))).)). | 0.950 -15.54 | ||
| rat | chromosome:20:13204648:13204739:-1 | intergenic |
sblock8072 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.114 | no | no | 0.47/0.63 | 19/25/0.75 | 0.0 1.5 0.0 0.5 | 0.0 0.5 0.0 2.0 | 1 2 7 4 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 28 44 39 6 | 8 -11 -3 26 | 5arm 5arm_loop_3arm 3arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.37 0.43 0.37 | 3 5 4 3 | 20 | 2 | 0 | 5 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------UCAGCAG---------------------------------------------------- | 8 | novel | |
| seed | ---------------------------------------------------------------------------------------CACAAAC----------------------- | 2 | novel | |
| seed | ----------------------------------------------------------------------------------------ACAAACA---------------------- | 2 | novel | |
| seed | --------------------------------------------------------CUUCAGC------------------------------------------------------ | 2 | novel | |
| seed | ----------------------------------------------------GCUUCUU---------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------AGCUGCU-------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------GGAAGCA--------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------GAGAGCU----------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------AGCAGGC-------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------CAGCAGG--------------------------------------------------- | 1 | miR-214 | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------TTCAGCAGGCCCTTGTACCGT--------------------------------------- | 21 | 1 | 7 | |
| -------------------------------------------------------TCTTCAGCAGGCCCTTGTACCGT--------------------------------------- | 23 | - | 2 | |
| ----------------------------------------------------------TCAGCAGGCCCTTGTACCGT--------------------------------------- | 20 | - | 1 | |
| -----------------------------------------------------------CAGCAGGCCCTTGTACCGT--------------------------------------- | 19 | 1 | - | |
| --------------------------------------------TGAGAGCTGCTTCTTCAGCAG---------------------------------------------------- | 21 | - | 1 | |
| ---------------------------------------------------TGCTTCTTCAGCAGGCCCTTG--------------------------------------------- | 21 | 1 | - | |
| -----------------------------------------------GAGCTGCTTCTTCAGCAGG--------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------------------------CACAAACAGAAGGTTGCTC----------- | 19 | - | 1 | |
| ----------------------------TGGAAGCAGGTCTGGGTGA---------------------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------------------------------------TCACAAACAGAAGGTTGCTCCTGTG------ | 25 | - | 1 | |
| ---------------------------------------------------------------------------------------CACAAACAGAAGGTTGCTCCTGT------- | 23 | - | 1 | |
| --------------------------------------------------------------------------------------TCACAAACAGAAGGTTGCTCC---------- | 21 | - | 1 | |
| rat | gttgagagaggaggggtttggttaagactggaagcaggtctgggtgagagctgcttcTTCAGCAGGCCCTTGTACCGTattccagttcacaaacagaaggttgctcctgtgctccac | |||
| ********************************************************************************************************************* | ||||
| rat | ((.(((..(((((.(((((.(((..((((((((...(((..((((.....(((((.....)))))))))....)))...))))))))....)))...))))).)))))...))).)) | 0.710 -37.50 | ||
| rat | chromosome:3:76973838:76973954:1 | intergenic |
sblock9170 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.151 | no | no | 0.33/0.47 | 18/24/0.87 | 0.0 0.0 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 1.0 1.0 0.0 | 1 1 1 2 12 2 4 | 0 0 0 0 0 0 0 | 1 1 1 1 4 1 2 | 0 0 0 0 0 0 0 | 22 26 32 50 38 25 17 | 13 7 1 -18 -3 11 22 | 5arm 5arm 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 2 2 2 2 2 2 | nd nd nd nd nd nd nd | 0.39 0.40 0.55 0.62 0.58 0.43 0.40 | 3 3 7 7 7 4 5 | 30 | 5 | 0 | -1 |
| reads | miRBase family seed | ||||||
| seed | ---------------------------------------------------------CCGCUUC------------------------------------------------------ | 17 | novel | ||||
| seed | ----------------------------------------------------------------------------------AACCCAA----------------------------- | 4 | novel | ||||
| seed | ------------------------------------------------------------CUUCUCU--------------------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------------------------GCUUUUC------------------------------------------------------------ | 2 | novel | ||||
| seed | -----------------------------------------------------------------------AACCAUG---------------------------------------- | 2 | novel | ||||
| seed | ---------------------------------CACACAA------------------------------------------------------------------------------ | 1 | novel | ||||
| seed | -----------------------GGCCAGU---------------------------------------------------------------------------------------- | 1 | novel | ||||
| seed | ---------------------------AGUUAUC------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T2S2 | T4S2 | T5S1 | |||
| --------------------------------------------------------TCCGCTTCTCTTTCTAACCAT----------------------------------------- | 21 | 1 | 1 | 1 | - | 8 | |
| --------------------------------------------------------TCCGCTTCTCTTTCTAACCATGTT-------------------------------------- | 24 | - | - | - | - | 4 | |
| ---------------------------------------------------------------------------------TAACCCAACACTTAGGTCCA----------------- | 20 | - | - | - | 2 | 2 | |
| --------------------------------------------------TGCTTTTCCGCTTCTCTTTCT----------------------------------------------- | 21 | - | - | - | - | 2 | |
| --------------------------------------------------------TCCGCTTCTCTTTCTAACCA------------------------------------------ | 20 | 1 | - | - | - | - | |
| --------------------------------TCACACAATAGACTTGCTTG------------------------------------------------------------------ | 20 | 1 | - | - | - | - | |
| ----------------------TGGCCAGTTATCACACAA------------------------------------------------------------------------------ | 18 | - | - | - | - | 1 | |
| --------------------------CAGTTATCACACAATAGACT------------------------------------------------------------------------ | 20 | - | - | - | - | 1 | |
| --------------------------------------------------------TCCGCTTCTCTTTCTAACC------------------------------------------- | 19 | - | 1 | - | - | - | |
| -----------------------------------------------------------GCTTCTCTTTCTAACCATG---------------------------------------- | 19 | 1 | - | - | - | - | |
| -----------------------------------------------------------GCTTCTCTTTCTAACCAT----------------------------------------- | 18 | - | 1 | - | - | - | |
| ----------------------------------------------------------------------TAACCATGTTATAACCCAACA--------------------------- | 21 | - | - | - | - | 1 | |
| ----------------------------------------------------------------------TAACCATGTTATAACCCAACACT------------------------- | 23 | - | - | - | - | 1 | |
| rat | gctgggtagtcccttcggcctatggccagttatcacacaatagacttgcttgctttTCCGCTTCTCTTTCTAACCATGTTataacccaacacttaggtccattatccactgccttggt | ||||||
| ********************************************************************************************************************** | |||||||
| rat | ((((((((((......(((((((((...(((((.(((...((((.......((......)).......))))....))).)))))))).....))))))........))))))).))) | 0.490 -22.88 | |||||
| rat | chromosome:4:164298105:164298222:1 | intergenic |
sblock9394 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.931 | no | no | 0.32/0.48 | 19/24/0.90 | 0.0 1.0 0.0 0.0 | 0.0 0.0 1.0 0.0 | 1 3 4 2 | 0 0 0 0 | 1 2 1 1 | 0 0 0 0 | 10 27 39 16 | 27 6 -7 20 | 5arm 5arm 5arm_loop_3arm 3arm | 1 1 1 1 | nd nd nd nd | 0.42 0.35 0.54 0.33 | 4 5 5 3 | 10 | 2 | 0 | -18 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------GAAAACU----------------------------------------------------------------------- | 4 | novel | |
| seed | ----------------------------------------------------------------------------------GAGUUGA----------------------------- | 2 | novel | |
| seed | -------------------------------UCAUGUU-------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----------------------------CGCUCAU----------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------GGCUAUU---------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ------------------------------CTCATGTTCTGAAAACTTGA-------------------------------------------------------------------- | 20 | - | 2 | |
| ---------------------------------------TGAAAACTTGATCCAGTGGAG---------------------------------------------------------- | 21 | - | 2 | |
| ---------------------------------------------------------------------------------TGAGTTGAGAGGTATGGGTCT---------------- | 21 | - | 2 | |
| ---------------------------------------TGAAAACTTGATCCAGTGGAGA--------------------------------------------------------- | 22 | - | 1 | |
| ---------------------------TCGCTCATGTTCTGAAAACTTGA-------------------------------------------------------------------- | 23 | 1 | - | |
| ----------TGGCTATTGTATATGATTC----------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------TGAAAACTTGATCCAGTGGAGAAC------------------------------------------------------- | 24 | - | 1 | |
| rat | ataggtctgaTGGCTATTGTATATGATTCGCTCATGTTCTGAAAACTTGATCCAGTGGAGAACgtggcagggaggatagttTGAGTTGAGAGGTATGGGTCTaaaacaggaattctat | |||
| ********************************************************************************************************************** | ||||
| rat | (((((((((..((((...((((....((.(((((((((((.....((((..(((((.....)).))))))).))))))...))))).))...)))).)))).....))))...))))) | 0.820 -21.20 | ||
| rat | chromosome:5:114523720:114523837:-1 | intergenic |
sblock9396 [novel_cloningOK_multiarm_DicerNOK_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.049 | no | no | 0.32/0.37 | 18/24/0.75 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 7 1 1 | 0 0 0 | 4 1 1 | 0 0 0 | 10 19 4 | -7 -14 -1 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.62 0.63 0.32 | 8 8 3 | 16 | 4 | 3 | 0 |
| reads | miRBase family seed | |||||
| seed | -----------AUCAUCU------------------------------------ | 14 | novel | |||
| seed | --------------------------------AGUACUG--------------- | 1 | novel | |||
| seed | --------------------GGCUUUU--------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T4S1 | T4S2 | T5S1 | |||
| ----------CATCATCTATGGCTTTTTTCT----------------------- | 21 | 1 | 1 | 1 | 7 | |
| -------------------TGGCTTTTTTCTTAGTACT---------------- | 19 | 1 | - | - | - | |
| ----------CATCATCTATGGCTTTTT-------------------------- | 18 | - | - | - | 1 | |
| -------------------------------TAGTACTGAAGATGGCATT---- | 19 | - | - | - | 1 | |
| ----------CATCATCTATGGCTTTTTTCTT---------------------- | 22 | - | - | - | 1 | |
| ----------CATCATCTATGGCTTTTTTCTTAG-------------------- | 24 | - | - | 1 | - | |
| ----------CATCATCTATGGCTTTTTT------------------------- | 19 | 1 | - | - | - | |
| rat | gtatcactggCATCATCTATGGCTTTTTTCTtagtactgaagatggcattgaac | |||||
| ****************************************************** | ||||||
| rat | ...(((.((.((((.((....(((........)))...)).)))).)).))).. | 1.000 -12.70 | ||||
| rat | chromosome:5:114524397:114524450:-1 | intergenic |
novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH (14 loci)
block844557 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.010 | no | no | 0.40/0.47 | 19/20/0.25 | 0.8 | 0.5 | 4 | 0 | 1 | 0 | 22 | -2 | 3arm_loop | 20 | nd | 0.32 | 3 | 4 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------------------------------------------GCAGAAC--------------------------------- | 3 | novel |
| seed | ----------------------------------------------AUUGCAG------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------------------------------------TGCAGAACCTACAGTGTTG---------------------- | 19 | 3 | |
| ---------------------------------------------TATTGCAGAACCTACAGTGT------------------------ | 20 | 1 | |
| rat | tctgttgatgcgggatctccactttcactgttgtagcaaaccaacTATTGCAGAACCTACAGTGTTGgaacaactgcattgtatcagga | ||
| ***************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | ||
| rat | ((((.((((((((....((((....((((((.((.((((........))))...))..)))))).))))....))))))))...)))). | 1.000 -26.20 |
| rat | chromosome:1:50289763:50289851:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
block1020082 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 13 | -4 | 3arm_loop | 14 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------AACAGCU------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ---------------------------CAACAGCTAAACACTTCAG------------- | 19 | 1 | |
| rat | ttaatttggtctactaaggattaagctCAACAGCTAAACACTTCAGaccacaaagttaa | ||
| *********************************************************** | |||
| rat | .(((((((((((...(((..((.((((....)))).))..))).))))))...))))). | 1.000 -12.90 |
| rat | chromosome:1:183676482:183676540:1 | intergenic |
block1063656 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.58/0.58 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 28 | -2 | 5arm_loop | 14 | nd | 0.32 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------GCAGGCC----------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------TGCAGGCCTTCAGAGTGCA------------------------------------------ | 19 | 1 | |
| rat | agtgcagccactgtggaaaagcccacacTGCAGGCCTTCAGAGTGCAgccactgtggaaaagcctacagttaggctcacacgtgctcac | ||
| ***************************************************************************************** | |||
| --------------------------------------------------------------------------------------------------- | ENSRNOT00000045636 ENSRNOG00000000539 Zfand3 | ||
| rat | .(((.((.(((((((....((((...((((.((((.((((.((((....)))).))))...)))).))))..)))))))).)))))))) | 0.820 -33.00 |
| rat | chromosome:20:8400156:8400244:-1 | Opposite_strand|Intronic_coding|ENSRNOT00000045636|ENSRNOG00000000539 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000000648|ENSRNOG00000000539 ## ENSRNOG00000000539|protein_coding|Zfand3|AN1-type zinc finger protein 3 (Testis-expressed sequence 27). [Source:UniProtKB/Swiss-Prot;Acc:Q5U2M7] ## {Repeats: trf 10 29 0 class=trf,trf 22 41 0 class=trf} |
block1113881 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 26 | -2 | 5arm_loop | 64 | nd | 0.33 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---------------------------GAUAUUC-------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T2S2 | |||
| --------------------------GGATATTCTCTGAGTCCC---------------------------------------------- | 18 | 1 | |
| rat | tctcaagaagaatatgaggctctgctGGATATTCTCTGAGTCCCagacttgaagctcatatccagaagacacccgcaatctacatgagaa | ||
| ****************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044322 ENSRNOG00000028669 RGD1565550_predicted | ||
| rat | (((((...(((...((.((.(((.((((((((.((..(((((...)))))..))...)))))))).)))...)).)).)))...))))). | 1.000 -25.40 |
| rat | chromosome:20:38370244:38370333:1 | Same_strand|Intronic_non-coding|ENSRNOT00000044322|ENSRNOG00000028669 ## ENSRNOG00000028669|protein_coding|RGD1565550_predicted| |
block1913647 [novel_lenNOK_Multihit_loopOverlap_randfoldOK_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 40 | -4 | 3arm_loop | 26 | nd | 0.37 | 3 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------UGUUUCU--------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------TTGTTTCTGTCACCTGACT---------------------------------------- | 19 | 1 | |
| rat | ccacctggagccctgctggagatcactgctttgtagtcatatgattgtttctgaatcaTTGTTTCTGTCACCTGACTtcccagctagtgtcttgaagccctcagaactccagtgtgg | ||
| ********************************************************************************************************************* | |||
| rat | ((((((((((..(((((.((((.(((((((....(((((..((((.......(((.......))).))))..)))))....))).))))))))..)))....))..)))))).)))) | 0.940 -37.20 |
| rat | chromosome:6:14985429:14985545:-1 | intergenic |
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