other hairpins
novel_lenNOK_cloningOK_mirtron (14 loci)
block2086257 [novel_lenNOK_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.37/0.46 | 18/24/0.38 | 0.0 | 0.5 | 31 | 0 | 4 | 0 | 35 | 5 | 3arm | 1 | 2 | 0.25 | 3 | 39 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ---------------------------------------------------------CUCCUUU------------------------------------------------ | 39 | novel | |||
| len | cloning frequencies | |||||
| T2S1 | T2S2 | T5S1 | T5S2 | |||
| --------------------------------------------------------TCTCCTTTGCTTAAATCCT------------------------------------- | 19 | 7 | 4 | 4 | 3 | |
| --------------------------------------------------------TCTCCTTTGCTTAAATCC-------------------------------------- | 18 | - | 6 | - | - | |
| --------------------------------------------------------TCTCCTTTGCTTAAATCCTGCAG--------------------------------- | 23 | 2 | 1 | - | 2 | |
| --------------------------------------------------------TCTCCTTTGCTTAAATCCTGC----------------------------------- | 21 | 1 | 4 | - | - | |
| --------------------------------------------------------TCTCCTTTGCTTAAATCCTG------------------------------------ | 20 | - | 3 | - | 1 | |
| --------------------------------------------------------TCTCCTTTGCTTAAATCCTGCAGG-------------------------------- | 24 | 1 | - | - | - | |
| rat | ccaatggctcctggctggtgggaagaggcacaggattcacatatgttaaattgctgTCTCCTTTGCTTAAATCCTGCaggaagtccagtgaatatattgctgccatcctgga | |||||
| **************************************************************************************************************** | ||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000006533 ENSRNOG00000004786 Cyp4f1 | |||||
| rat | ((((((((((((((((.((((((..(((((.((((..((((..........)).))..)))).)))))...))))))....)).)))).))..........)))))..))). | 0.880 -34.60 | ||||
| rat | chromosome:7:13593652:13593763:-1 | Same_strand|Boundary_coding|ENSRNOT00000006533|ENSRNOG00000004786 ## ENSRNOG00000004786|protein_coding|Cyp4f1|Cytochrome P450 4F1 (EC 1.14.14.1) (CYPIVF1) (P450-A3). [Source:UniProtKB/Swiss-Prot;Acc:P33274] |
block2177107 [novel_lenNOK_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.068 | no | no | 0.50/0.56 | 18/22/0.61 | 0.4 | 1.8 | 28 | 0 | 8 | 0 | 25 | 2 | 3arm | 1 | 0 | 0.14 | 2 | 28 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | ----------------------------------------------------------------AACCCUC--------------------------------------- | 22 | novel | |||||||
| seed | ------------------------------------------------------------------CCCUCAC------------------------------------- | 4 | novel | |||||||
| seed | -----------------------------------------------------------------ACCCUCA-------------------------------------- | 2 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------------------------CAACCCTCACCTTTTCCCTCAG------------------------- | 22 | 3 | - | - | - | 2 | - | 2 | - | |
| ---------------------------------------------------------------CAACCCTCACCTTTTCCC----------------------------- | 18 | - | 1 | 1 | - | 2 | - | - | 2 | |
| ---------------------------------------------------------------CAACCCTCACCTTTTCCCT---------------------------- | 19 | - | 1 | - | - | - | 1 | 3 | - | |
| -----------------------------------------------------------------ACCCTCACCTTTTCCCTCAG------------------------- | 20 | - | - | - | - | - | 2 | - | 2 | |
| ---------------------------------------------------------------CAACCCTCACCTTTTCCCTCA-------------------------- | 21 | 1 | - | 2 | - | - | - | - | - | |
| ----------------------------------------------------------------AACCCTCACCTTTTCCCTCAG------------------------- | 21 | - | - | - | 1 | - | - | - | - | |
| ---------------------------------------------------------------CAACCCTCACCTTTTCCCTC--------------------------- | 20 | - | 1 | - | - | - | - | - | - | |
| ----------------------------------------------------------------AACCCTCACCTTTTCCCTCA-------------------------- | 20 | 1 | - | - | - | - | - | - | - | |
| rat | ggtgtaagaatccattttctggctgggggtcgggtgtgagggctgaggactgaggagctgaccCAACCCTCACCTTTTCCCTCAGgcctgcgcagtgggattgattgcca | |||||||||
| ************************************************************************************************************** | ||||||||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000010180 ENSRNOG00000007650 Cd63 | |||||||||
| rat | ((((...((.((((((....(((((((((..(((.(((((((.((.((.............)))).))))))))))..))))))).)).....)))))).))...)))). | 0.980 -43.02 | ||||||||
| rat | chromosome:7:2209832:2209941:1 | Same_strand|Intronic_coding|ENSRNOT00000010180|ENSRNOG00000007650 ## ENSRNOG00000007650|protein_coding|Cd63|CD63 antigen (Mast cell antigen AD1). [Source:UniProtKB/Swiss-Prot;Acc:P28648] |
block2603796 [novel_lenNOK_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.210 | no | no | 0.37/0.45 | 18/23/0.38 | 0.5 | 1.7 | 24 | 0 | 2 | 0 | 16 | 0 | 5arm | 1 | 0 | 0.21 | 1 | 29 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------UCCUUAA--------------------------------------------------------------- | 14 | novel | |
| seed | -----------------UUCCUUA---------------------------------------------------------------- | 13 | novel | |
| seed | -------------------CCUUAAC-------------------------------------------------------------- | 2 | novel | |
| len | cloning frequencies | |||
| T2S1 | T2S2 | |||
| ----------------CTTCCTTAACCATAACCCT----------------------------------------------------- | 19 | 9 | 4 | |
| -----------------TTCCTTAACCATAACCCTTCCAG------------------------------------------------ | 23 | 5 | 3 | |
| -----------------TTCCTTAACCATAACCCT----------------------------------------------------- | 18 | 3 | 1 | |
| ------------------TCCTTAACCATAACCCTTCCAG------------------------------------------------ | 22 | - | 2 | |
| -----------------TTCCTTAACCATAACCCTT---------------------------------------------------- | 19 | - | 1 | |
| -----------------TTCCTTAACCATAACCCTTC--------------------------------------------------- | 20 | 1 | - | |
| rat | gttcaagttcccctttCTTCCTTAACCATAACCCTTCCAGtccaactcacagggacaaagtatggctgtggaggaggtgactgtggcg | |||
| **************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000044968 ENSRNOG00000014555 RGD1311975 | |||
| +++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000052245 ENSRNOG00000014555 RGD1311975 | |||
| rat | (((..(((..((...((((((.((.(((((.((((...((.....))...))))......))))).)).))))))))..)))..))). | 1.000 -23.90 | ||
| rat | chromosome:9:56785511:56785598:1 | Same_strand|Intronic_coding|ENSRNOT00000052245|ENSRNOG00000014555 ## Same_strand|Boundary_non-coding|ENSRNOT00000033068|ENSRNOG00000014555 ## ENSRNOG00000014555|protein_coding|RGD1311975|aldehyde oxidase 4 [Source:RefSeq_peptide;Acc:NP_001008523] |
block2950759 [novel_lenNOK_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.43/0.52 | 18/25/0.34 | 0.0 | 2.0 | 21 | 0 | 9 | 0 | 18 | 5 | 3arm | 1 | 2 | 0.28 | 3 | 35 | 9 | na | na |
| reads | miRBase family seed | ||||||||||
| seed | ---------------------------------------------------------------------CAUCACC----------------------------------- | 34 | novel | ||||||||
| seed | -----------------------------------------------------------------UUCUCAU--------------------------------------- | 1 | novel | ||||||||
| len | cloning frequencies | ||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | |||
| --------------------------------------------------------------------TCATCACCTCTTGTGTCC------------------------- | 18 | 5 | 1 | 1 | - | 1 | 2 | 1 | 1 | - | |
| --------------------------------------------------------------------TCATCACCTCTTGTGTCCT------------------------ | 19 | 2 | - | - | - | 2 | 1 | - | 2 | - | |
| --------------------------------------------------------------------TCATCACCTCTTGTGTCCTGCAGCT------------------ | 25 | - | - | - | 4 | - | - | - | - | - | |
| --------------------------------------------------------------------TCATCACCTCTTGTGTCCTGC---------------------- | 21 | 1 | 1 | - | - | 1 | - | 1 | - | - | |
| --------------------------------------------------------------------TCATCACCTCTTGTGTCCTG----------------------- | 20 | 2 | - | - | - | - | 2 | - | - | - | |
| --------------------------------------------------------------------TCATCACCTCTTGTGTCCTGCA--------------------- | 22 | - | 1 | - | - | - | 1 | - | - | 1 | |
| ----------------------------------------------------------------ATTCTCATCACCTCTTGTGTC-------------------------- | 21 | - | - | - | - | 1 | - | - | - | - | |
| rat | ttactctctggatgtgagtgccagctagcagggcaggggtcaggagattgtcctggattctcggattcTCATCACCTCTTGTGTCCTGCAGCTagacaatggctctgagta | ||||||||||
| *************************************************************************************************************** | |||||||||||
| >>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000006365 ENSRNOG00000004776 Ftsj1_predicted | ||||||||||
| rat | .(((((..........((.((((.(((((...((((((..((((((..((....(((((....)))))....)).))))))..)))))).)))))....)))).))))))) | 0.640 -38.80 | |||||||||
| rat | chromosome:X:26281095:26281205:1 | Same_strand|Boundary_coding|ENSRNOT00000006365|ENSRNOG00000004776 ## ENSRNOG00000004776|protein_coding|Ftsj1_predicted| |
block2258486 [novel_lenNOK_cloningOK_mirtron]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.104 | no | no | 0.58/0.63 | 19/20/0.17 | 0.0 0.7 | 0.0 0.8 | 1 11 | 0 0 | 1 5 | 0 0 | 19 25 | 23 14 | 5arm 5arm | 1 1 | 7 1 | 0.15 0.20 | 2 3 | 12 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | --------------------------CCGGUGC------------------------------------------------------------------------------------ | 9 | novel | ||||
| seed | ------------------------------UGCUGUC-------------------------------------------------------------------------------- | 2 | novel | ||||
| seed | --------------------CUUUGAC------------------------------------------------------------------------------------------ | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T3S1 | T3S2 | T5S1 | T5S2 | |||
| -------------------------ACCGGTGCTGTCACCCTAC------------------------------------------------------------------------- | 19 | 1 | 2 | 3 | 1 | 1 | |
| -----------------------------GTGCTGTCACCCTACAGAC--------------------------------------------------------------------- | 19 | - | - | - | 2 | - | |
| -------------------GCTTTGACCGGTGCTGTCAC------------------------------------------------------------------------------ | 20 | - | 1 | - | - | - | |
| -------------------------ACCGGTGCTGTCACCCTACA------------------------------------------------------------------------ | 20 | - | 1 | - | - | - | |
| rat | gacctcagaaactccaaaaGCTTTGACCGGTGCTGTCACCCTACAGACcaaatctataatcatgtcactgagagactgccaggtacgcgcaccggttcggttgggttctcctcggtc | ||||||
| ********************************************************************************************************************* | |||||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000055906 ENSRNOG00000015916 RGD1306041_predicted | ||||||
| ...............................................................>>>>>>>>>>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000055905 ENSRNOG00000015916 RGD1306041_predicted | ||||||
| ........................................................................>>>>>>>>>>>>>>>++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000021582 ENSRNOG00000015916 RGD1306041_predicted | ||||||
| rat | ((((...(((((.(((...(((..((((((((((((.(((...(((......(((....(((......))).))))))...)))))).))))))))).))))))))).))...)))) | 0.800 -33.90 | |||||
| rat | chromosome:7:123837073:123837189:1 | Same_strand|Boundary_non-coding|ENSRNOT00000021582|ENSRNOG00000015916 ## ENSRNOG00000015916|protein_coding|RGD1306041_predicted| |
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (14 loci)
sblock11675 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.009 | no | no | 0.35/0.48 | 19/25/0.59 | 0.0 0.0 2.0 4.0 0.5 0.0 | 0.2 0.0 5.3 1.2 1.0 0.0 | 4 1 3 6 2 1 | 0 0 0 0 0 0 | 1 1 1 2 2 1 | 0 0 0 0 0 0 | 6 27 35 18 12 6 | 20 -1 -17 11 24 31 | 5arm 5arm_loop 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.20 0.30 0.35 0.37 0.45 0.35 | 2 3 4 5 5 3 | 17 | 3 | -3 | -9 |
| reads | miRBase family seed | ||||
| seed | -------CCAUUGA--------------------------------------------------------------------------------------------- | 4 | novel | ||
| seed | ------------------------------------------------------------------GAAGCAG---------------------------------- | 3 | novel | ||
| seed | ---------------------------------------AGUGAGC------------------------------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------AGAAGAC----------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------------GACUGAA-------------------------------------- | 1 | novel | ||
| seed | ----------------------------GCCAAAC------------------------------------------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------------------------GACAUUU------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------------UCUGUGA------------------ | 1 | novel | ||
| seed | ------------------------------------GUUAGUG---------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------------------------------------ACAUUUU------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------TCCATTGAATGACAGGTCTG--------------------------------------------------------------------------------- | 20 | - | - | 3 | |
| -----------------------------------------------------------------TGAAGCAGAAGACATTTTCTGTGA------------------ | 24 | - | 1 | 1 | |
| ----------------------------------------------------------------------CAGAAGACATTTTCTGTGA------------------ | 19 | - | - | 2 | |
| -----------------------------------TGTTAGTGAGCTAAAGTTC----------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------------------------------------------AGACATTTTCTGTGATGGA-------------- | 19 | 1 | - | - | |
| ---------------------------------------------------------------------------GACATTTTCTGTGATGGAAG------------ | 20 | - | - | 1 | |
| ---------------------------------------------------------------------------------TTCTGTGATGGAAGTGGAGA------ | 20 | - | - | 1 | |
| ------TCCATTGAATGACAGGTCT---------------------------------------------------------------------------------- | 19 | - | - | 1 | |
| --------------------------------------TAGTGAGCTAAAGTTCGGGGGTT---------------------------------------------- | 23 | - | - | 1 | |
| -----------------------------------------------------------------TGAAGCAGAAGACATTTTCT---------------------- | 20 | - | - | 1 | |
| -------------------------------------------------------------TGACTGAAGCAGAAGACATTTTCTG--------------------- | 25 | - | 1 | - | |
| --------------------------------------TAGTGAGCTAAAGTTCGGGGGTTTG-------------------------------------------- | 25 | - | - | 1 | |
| ---------------------------TGCCAAACTGTTAGTGAGCT------------------------------------------------------------ | 20 | - | - | 1 | |
| rat | tgctgcTCCATTGAATGACAGGTCTGcTGCCAAACTGTTAGTGAGCTAAAGTTCGGGGGTTTGACTGAAGCAGAAGACATTTTCTGTGATGGAAGTGGAGAgggcaa | ||||
| *********************************************************************************************************** | |||||
| rat | ((((.(((((((..((.((((((((.((((((((((.((...((((....)))))).))))))......)))).)))).....)))).))...)))))))..)))). | 0.450 -36.40 | |||
| rat | chromosome:8:57733545:57733651:-1 | intergenic |
sblock11695 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.37/0.48 | 18/25/0.45 | 1.2 0.0 1.8 | 3.2 0.0 2.0 | 5 1 5 | 0 0 0 | 1 1 2 | 0 0 0 | 16 32 19 | -8 -22 8 | 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.11 0.56 0.43 | 1 7 7 | 11 | 2 | 2 | 0 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------AGACACA-------------------------------- | 3 | novel | |
| seed | -----------------CCUACAG----------------------------------------------------------------- | 3 | novel | |
| seed | --------------------ACAGUUU-------------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------AGAGACA---------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------GACACAU------------------------------- | 1 | novel | |
| seed | ---------------------------------CCUCUUG------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T5S1 | |||
| -------------------------------------------------GAGACACATGAAGGACTT---------------------- | 18 | 1 | 1 | |
| ----------------TCCTACAGTTTGTTTCTCCTC---------------------------------------------------- | 21 | - | 1 | |
| --------------------------------------------------AGACACATGAAGGACTTGAG------------------- | 20 | - | 1 | |
| --------------------------------TCCTCTTGGACACTCTAGAGACACA-------------------------------- | 25 | - | 1 | |
| -------------------------------------------------GAGACACATGAAGGACTTGAG------------------- | 21 | - | 1 | |
| -------------------TACAGTTTGTTTCTCCTCT--------------------------------------------------- | 19 | - | 1 | |
| -----------------------------------------------TAGAGACACATGAAGGACT----------------------- | 19 | - | 1 | |
| ----------------TCCTACAGTTTGTTTCTCC------------------------------------------------------ | 19 | - | 1 | |
| -------------------TACAGTTTGTTTCTCCTCTTGGAC---------------------------------------------- | 24 | - | 1 | |
| ----------------TCCTACAGTTTGTTTCTCCTCT--------------------------------------------------- | 22 | - | 1 | |
| rat | tggagctgtcactttcTCCTACAGTTTGTTTCTCCTCTTGGACACTCTAGAGACACATGAAGGACTTGAGggggaaggtgggggttcca | |||
| ***************************************************************************************** | ||||
| rat | .((((((.((((((((((((.((((((((((((((....))).......)))))).......))).)).)))))))))))).)))))). | 0.990 -36.62 | ||
| rat | chromosome:8:57741203:57741291:-1 | intergenic |
sblock12530 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.42/0.67 | 18/23/0.20 | 0.0 1.7 0.5 0.0 0.0 | 0.0 2.3 2.0 0.0 0.3 | 1 3 2 1 3 | 0 0 0 0 0 | 1 3 2 1 2 | 0 0 0 0 0 | 25 33 32 33 22 | 1 -10 -2 2 12 | 5arm 5arm_loop_3arm 3arm 3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.15 0.44 0.33 0.39 0.28 | 1 6 6 6 2 | 10 | 6 | 0 | 4 |
| reads | miRBase family seed | |||||||
| seed | --------------------------------------------------------------------UCCCAGU--------------------------------- | 3 | novel | |||||
| seed | --------------------------GUGUCCU--------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------CCGAGUG--------------------------------------------------------------- | 1 | novel | |||||
| seed | -------------------------------------------------------CUACCGG---------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------GGACCGA------------------------------------------------------------------ | 1 | novel | |||||
| seed | ----------------------------------------------------------CCGGAGC------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------GGGACCG------------------------------------------------------------------- | 1 | novel | |||||
| seed | ------------------------------------------------------CCUACCG----------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T5S2 | |||
| -------------------------------------------------------------------ATCCCAGTGAAAACAGTG----------------------- | 18 | 1 | 1 | - | - | - | - | |
| -------------------------------------------------------------------ATCCCAGTGAAAACAGTGT---------------------- | 19 | 1 | - | - | - | - | - | |
| -------------------------AGTGTCCTGGGGACCGAGTG--------------------------------------------------------------- | 20 | - | - | - | 1 | - | - | |
| ------------------------------------------------------CCTACCGGAGCGAATCCC------------------------------------ | 18 | - | - | - | 1 | - | - | |
| ---------------------------------GGGGACCGAGTGGAACAC--------------------------------------------------------- | 18 | - | - | - | 1 | - | - | |
| -----------------------------------------------------ACCTACCGGAGCGAATCCCAGTG-------------------------------- | 23 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------ACCGGAGCGAATCCCAGT--------------------------------- | 18 | 1 | - | - | - | - | - | |
| -------------------------------------ACCGAGTGGAACACACACC---------------------------------------------------- | 19 | - | - | 1 | - | - | - | |
| ----------------------------------GGGACCGAGTGGAACACAC------------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| rat | gctaaggctctgcaggcgcctgcgcAGTGTCCTGGGGACCGAGTGGAACACACACCTACCGGAGCGAATCCCAGTGAAAACAGTGTgggatccctgcggagctctgca | |||||||
| ************************************************************************************************************ | ||||||||
| ---------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000044912 ENSRNOG00000012733 NP_001101708.1 | |||||||
| rat | ((...(((((((((((..((..(((.((.((((((((.(((.((((.........)))))))......)))))).))..)).)))..))...)))))))))))..)). | 0.560 -49.90 | ||||||
| rat | chromosome:9:104654235:104654342:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000017613|ENSRNOG00000012733 ## Opposite_strand|Intronic_coding|ENSRNOT00000044912|ENSRNOG00000012733 ## ENSRNOG00000012733|protein_coding|NP_001101708.1|ankyrin repeat domain 12 [Source:RefSeq_peptide;Acc:NP_001101708] ## {SimpF: oe = 0.76 1 CpG} |
sblock12563 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.32/0.58 | 19/25/0.40 | 0.6 4.7 1.0 | 0.6 4.3 1.2 | 7 13 5 | 0 0 0 | 3 3 2 | 0 0 0 | 0 11 12 | 28 -1 0 | 5arm 5arm 3arm | 2 2 2 | nd nd nd | 0.26 0.22 0.05 | 3 3 1 | 25 | 6 | -19 | -17 |
| reads | miRBase family seed | |||||||
| seed | -CUCCCGC---------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------------GAACCUG----------------------------------------------------------------------- | 3 | novel | |||||
| seed | -----------------------CCACAAU------------------------------------------------------------ | 3 | novel | |||||
| seed | --------------------------------------------------------AUAGCAG--------------------------- | 3 | novel | |||||
| seed | --------------------------CAAUCAC--------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------------CACUAAG----------------------------------------------------- | 2 | novel | |||||
| seed | ---CCCGCUC-------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------CACAAUC----------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------AUCCACA-------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CCUAUAG------------------------------ | 1 | novel | |||||
| seed | ------------------GGUAUCC----------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------AGCAGGA------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| TCTCCCGCTCATGAACCTG----------------------------------------------------------------------- | 19 | - | - | - | 3 | 1 | 1 | |
| -------------------------------------------------------TATAGCAGGATGGTTTGGA---------------- | 19 | - | - | - | - | - | 3 | |
| -----------TGAACCTGGTATCCACAATCACT-------------------------------------------------------- | 23 | 1 | - | 1 | - | - | 1 | |
| --TCCCGCTCATGAACCTGGT--------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| ----------------------TCCACAATCACTAAGTTTG------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------TCACTAAGTTTGCTGTTCGAG---------------------------------------- | 21 | - | - | - | - | - | 2 | |
| --------------------TATCCACAATCACTAAGTT--------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------ACAATCACTAAGTTTGCTG---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -----------------------CCACAATCACTAAGTTTGCT----------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ----------------------------------------------------TCCTATAGCAGGATGGTTTG------------------ | 20 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------TAGCAGGATGGTTTGGATTCA------------ | 21 | - | - | - | - | - | 1 | |
| ----------------------TCCACAATCACTAAGTTTGCTGTTC------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -----------------TGGTATCCACAATCACTAAGTTTG------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -------------------------ACAATCACTAAGTTTGCTGT--------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| rat | TCTCCCGCTCATGAACCTGGTATCCACAATCACTAAGTTTGCTGTTCGAGccTCCTATAGCAGGATGGTTTGGATTCAggtctctgagct | |||||||
| ****************************************************************************************** | ||||||||
| rat | ......(((((.((((((((.(((((.(((((.....((((((((..((...))..)))))))).)))))))))))))))).))))))). | 0.890 -31.50 | ||||||
| rat | chromosome:9:105070292:105070381:1 | intergenic |
sblock12602 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.003 | no | no | 0.32/0.58 | 19/25/0.40 | 0.6 4.7 1.0 | 0.6 4.3 1.2 | 7 13 5 | 0 0 0 | 3 3 2 | 0 0 0 | 0 11 12 | 28 -1 0 | 5arm 5arm 3arm | 2 2 2 | nd nd nd | 0.26 0.22 0.05 | 3 3 1 | 25 | 6 | -19 | -17 |
| reads | miRBase family seed | |||||||
| seed | -CUCCCGC---------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------------GAACCUG----------------------------------------------------------------------- | 3 | novel | |||||
| seed | -----------------------CCACAAU------------------------------------------------------------ | 3 | novel | |||||
| seed | --------------------------------------------------------AUAGCAG--------------------------- | 3 | novel | |||||
| seed | --------------------------CAAUCAC--------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------------CACUAAG----------------------------------------------------- | 2 | novel | |||||
| seed | ---CCCGCUC-------------------------------------------------------------------------------- | 2 | novel | |||||
| seed | ------------------------CACAAUC----------------------------------------------------------- | 1 | novel | |||||
| seed | ---------------------AUCCACA-------------------------------------------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------------CCUAUAG------------------------------ | 1 | novel | |||||
| seed | ------------------GGUAUCC----------------------------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------AGCAGGA------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T2S2 | T4S1 | T4S2 | T5S1 | |||
| TCTCCCGCTCATGAACCTG----------------------------------------------------------------------- | 19 | - | - | - | 3 | 1 | 1 | |
| -------------------------------------------------------TATAGCAGGATGGTTTGGA---------------- | 19 | - | - | - | - | - | 3 | |
| -----------TGAACCTGGTATCCACAATCACT-------------------------------------------------------- | 23 | 1 | - | 1 | - | - | 1 | |
| --TCCCGCTCATGAACCTGGT--------------------------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| ----------------------TCCACAATCACTAAGTTTG------------------------------------------------- | 19 | - | - | - | - | - | 2 | |
| -----------------------------TCACTAAGTTTGCTGTTCGAG---------------------------------------- | 21 | - | - | - | - | - | 2 | |
| --------------------TATCCACAATCACTAAGTT--------------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -------------------------ACAATCACTAAGTTTGCTG---------------------------------------------- | 19 | - | - | - | - | - | 1 | |
| -----------------------CCACAATCACTAAGTTTGCT----------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| ----------------------------------------------------TCCTATAGCAGGATGGTTTG------------------ | 20 | - | 1 | - | - | - | - | |
| ---------------------------------------------------------TAGCAGGATGGTTTGGATTCA------------ | 21 | - | - | - | - | - | 1 | |
| ----------------------TCCACAATCACTAAGTTTGCTGTTC------------------------------------------- | 25 | - | - | - | - | - | 1 | |
| -----------------TGGTATCCACAATCACTAAGTTTG------------------------------------------------- | 24 | - | - | - | - | - | 1 | |
| -------------------------ACAATCACTAAGTTTGCTGT--------------------------------------------- | 20 | - | - | - | - | - | 1 | |
| rat | TCTCCCGCTCATGAACCTGGTATCCACAATCACTAAGTTTGCTGTTCGAGccTCCTATAGCAGGATGGTTTGGATTCAggtctctgagct | |||||||
| ****************************************************************************************** | ||||||||
| rat | ......(((((.((((((((.(((((.(((((.....((((((((..((...))..)))))))).)))))))))))))))).))))))). | 0.890 -31.50 | ||||||
| rat | chromosome:9:105320071:105320160:1 | intergenic |
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