other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK (14 loci)
sblock3371 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.22/0.55 | 18/24/0.67 | 0.5 0.0 0.0 0.0 1.5 0.0 0.2 0.0 | 0.2 0.0 0.0 0.0 0.5 0.0 0.8 0.0 | 4 2 1 3 2 1 4 1 | 0 0 0 0 0 0 0 0 | 2 1 1 2 1 1 1 1 | 0 0 0 0 0 0 0 0 | 7 25 33 48 45 19 11 7 | 22 5 0 -14 -23 19 27 34 | 5arm 5arm 5arm 5arm_loop_3arm 3arm_loop 3arm 3arm 3arm | 1 1 1 1 1 1 1 1 | nd nd nd nd nd nd nd nd | 0.30 0.30 0.15 0.47 0.40 0.38 0.53 0.61 | 4 6 1 8 5 5 5 9 | 18 | 3 | 7 | 0 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------UCAGACU------------------------ | 3 | novel | ||
| seed | -------------------------------------------------UCCUAAU---------------------------------------------------------------- | 3 | novel | ||
| seed | ----------GACCUUG------------------------------------------------------------------------------------------------------- | 3 | novel | ||
| seed | --------------------------CCAGAUU--------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | --------------------------------------------------------ACAGGGG--------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------------------UAGAGGU----------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------GUGGAUC-------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------AAUACAG------------------------------------------------------------ | 1 | novel | ||
| seed | ------------------------------------------------------------------------------------------CAGACUU----------------------- | 1 | novel | ||
| seed | ----------------------------------GGGAGAC------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------CUGACCU--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T5S1 | T5S2 | |||
| ------------------------------------------------TTCCTAATACAGGGGGTGA----------------------------------------------------- | 19 | - | 2 | 1 | |
| ---------TGACCTTGGTCCTTTATCCAGA----------------------------------------------------------------------------------------- | 22 | - | 3 | - | |
| -------------------------TCCAGATTTGGGAGACTGGGGAA------------------------------------------------------------------------ | 23 | - | 2 | - | |
| ----------------------------------------------------------------------------------------TTCAGACTTAGAGGTAGAAAA----------- | 21 | - | 2 | - | |
| -----------------------------------------------------------------------------------------TCAGACTTAGAGGTAGAAA------------ | 19 | - | 1 | - | |
| --------------------------------------------------------------------------------TGTGGATCTTCAGACTTAGAG------------------- | 21 | - | 1 | - | |
| -------TCTGACCTTGGTCCTTTATCCAG------------------------------------------------------------------------------------------ | 23 | 1 | - | - | |
| -----------------------------------------------------------------------------------------------TTAGAGGTAGAAAATTAA------- | 18 | - | 1 | - | |
| ----------------------------------------------------TAATACAGGGGGTGATTCCTGAGA-------------------------------------------- | 24 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TTCAGACTTAGAGGTAGAA------------- | 19 | - | 1 | - | |
| -------------------------------------------------------TACAGGGGGTGATTCCTGAG--------------------------------------------- | 20 | - | 1 | - | |
| ---------------------------------TGGGAGACTGGGGAATTCCT------------------------------------------------------------------- | 20 | - | 1 | - | |
| rat | ttggcccTCTGACCTTGGTCCTTTATCCAGATTTGGGAGACTGGGGAATTCCTAATACAGGGGGTGATTCCTGAGAtctcTGTGGATCTTCAGACTTAGAGGTAGAAAATTAAggggcca | ||||
| ************************************************************************************************************************ | |||||
| rat | .((((((.((.(((((((((....(((((......(((((((.((((((((((........))).))))))).)).))))).))))).....))))..))))).........)))))))) | 0.970 -42.10 | |||
| rat | chromosome:12:5599617:5599736:1 | intergenic |
sblock3391 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.38/0.46 | 18/26/0.62 | 0.0 2.4 2.0 | 0.0 5.3 3.6 | 1 7 5 | 0 0 0 | 1 2 1 | 0 0 0 | 16 30 0 | -3 -21 4 | 5arm_loop 5arm_loop_3arm 3arm | 1 1 1 | nd nd nd | 0.30 0.25 0.17 | 4 4 2 | 13 | 2 | 11 | 0 |
| reads | miRBase family seed | |||
| seed | ----------------------------------AACGCUU------------------------------------- | 3 | novel | |
| seed | -----------------------------------------------------GUGAAAC------------------ | 3 | novel | |
| seed | ---------------------------------UAACGCU-------------------------------------- | 2 | novel | |
| seed | -------------------------------CUUAACG---------------------------------------- | 1 | novel | |
| seed | -----------------AAAUUCA------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------GACAACA-------------------------- | 1 | novel | |
| seed | -----------------------------------ACGCUUU------------------------------------ | 1 | novel | |
| seed | -------------------------------------------------------GAAACUA---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------TAACGCTTTGGTGACAACATGTGA--------------------- | 24 | 1 | 1 | |
| ----------------------------------------------------TGTGAAACTATGTCTCTCCAAGTCCC | 26 | - | 2 | |
| --------------------------------TTAACGCTTTGGTGACAAC--------------------------- | 19 | - | 1 | |
| ------------------------------TCTTAACGCTTTGGTGAC------------------------------ | 18 | - | 1 | |
| ----------------------------------------------------TGTGAAACTATGTCTCTCCA------ | 20 | - | 1 | |
| ----------------------------------AACGCTTTGGTGACAACATGTG---------------------- | 22 | - | 1 | |
| --------------------------------TTAACGCTTTGGTGACAACA-------------------------- | 20 | - | 1 | |
| ----------------CAAATTCACTGTTGTCTTAACGC--------------------------------------- | 23 | - | 1 | |
| --------------------------------------------TGACAACATGTGAAACTATGTCTC---------- | 24 | - | 1 | |
| ---------------------------------TAACGCTTTGGTGACAACA-------------------------- | 19 | 1 | - | |
| ------------------------------------------------------TGAAACTATGTCTCTCCAAGTC-- | 22 | - | 1 | |
| rat | ggaagagagaacaataCAAATTCACTGTTGTCTTAACGCTTTGGTGACAACATGTGAAACTATGTCTCTCCAAGTCCC | |||
| ****************************************************************************** | ||||
| rat | (((.((((((...(((....((((((((((((((((....)))).))))))).)))))..))).))))))....))). | 1.000 -24.20 | ||
| rat | chromosome:12:5606168:5606245:1 | intergenic |
sblock3417 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.42/0.56 | 18/22/0.38 | 0.0 0.0 1.3 | 0.0 0.0 0.1 | 4 1 9 | 0 0 0 | 2 1 2 | 0 0 0 | 25 23 12 | -2 2 9 | 5arm_loop 3arm 3arm | 1 2 2 | nd nd nd | 0.42 0.37 0.25 | 5 4 1 | 16 | 3 | 11 | 14 |
| reads | miRBase family seed | ||||
| seed | --------------------------GGUUACC------------------------------------------------------------ | 6 | miR-409 | ||
| seed | -----------------------------------------------------------AAUAUCA--------------------------- | 5 | novel | ||
| seed | --------------------------------------------------------------AUCACAG------------------------ | 4 | novel | ||
| seed | ----------------------------------------------------GCCUGCU---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| -------------------------TGGTTACCTGCAGGAGTGA------------------------------------------------- | 19 | 1 | 4 | - | |
| ----------------------------------------------------------TAATATCACAGTAGCTCCCCCT------------- | 22 | 3 | 2 | - | |
| -------------------------------------------------------------TATCACAGTAGCTCCCCCT------------- | 19 | 1 | 2 | - | |
| ---------------------------------------------------TGCCTGCTAATATCACAGT----------------------- | 19 | - | - | 1 | |
| -------------------------------------------------------------TATCACAGTAGCTCCCCCTA------------ | 20 | - | 1 | - | |
| -------------------------TGGTTACCTGCAGGAGTG-------------------------------------------------- | 18 | - | 1 | - | |
| rat | ctcaggttgtctggtggtgtagcttTGGTTACCTGCAGGAGTGAttggtgctgcctgcTAATATCACAGTAGCTCCCCCTaggtcatctgaga | ||||
| ********************************************************************************************* | |||||
| rat | (((((((..(((((.((.((.(((.((((.....((((((((.......))).)))))....)))).))).)).)).)).)))..))))))). | 1.000 -35.10 | |||
| rat | chromosome:12:5617149:5617241:1 | intergenic |
sblock6172 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.42/0.62 | 18/21/0.15 | 1.9 0.7 0.0 0.0 0.0 0.0 | 2.9 1.3 0.0 0.0 0.0 0.0 | 8 6 1 3 1 1 | 0 0 0 0 0 0 | 2 3 1 2 1 1 | 0 0 0 0 0 0 | 14 22 36 42 51 29 | 19 13 2 -4 -16 10 | 5arm 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 2 2 2 2 2 2 | nd nd nd nd nd nd | 0.38 0.26 0.06 0.28 0.33 0.32 | 5 5 1 4 4 3 | 20 | 4 | -6 | -13 |
| reads | miRBase family seed | |||||
| seed | ---------------AGGGAGU------------------------------------------------------------------------------------------------ | 3 | novel | |||
| seed | -------------------------------------------GAAUCUC-------------------------------------------------------------------- | 3 | novel | |||
| seed | -----------------------AAGGCAC---------------------------------------------------------------------------------------- | 3 | miR-124 | |||
| seed | -----------------GGAGUGA---------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | --------------------GUGAAGG------------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ------------------------AGGCACA--------------------------------------------------------------------------------------- | 2 | novel | |||
| seed | ----------------------------------------------------CAGCCCC----------------------------------------------------------- | 1 | novel | |||
| seed | -------------------------------------GGUUGUG-------------------------------------------------------------------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------GACUUGC---------------------------------------- | 1 | novel | |||
| seed | -------------------------GGCACAU-------------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------GGGAGUG----------------------------------------------------------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T2S1 | T3S1 | T3S2 | |||
| ------------------------------------------TGAATCTCCCCAGCCCCA---------------------------------------------------------- | 18 | 1 | - | 2 | - | |
| --------------AAGGGAGTGAAGGCACATA------------------------------------------------------------------------------------- | 19 | - | 1 | 1 | - | |
| -----------------------AAGGCACATATCGAGGTTG---------------------------------------------------------------------------- | 19 | 1 | 1 | - | - | |
| ----------------------GAAGGCACATATCGAGGT------------------------------------------------------------------------------ | 18 | - | - | 2 | - | |
| -------------------AGTGAAGGCACATATCGA--------------------------------------------------------------------------------- | 18 | - | 1 | 1 | - | |
| --------------AAGGGAGTGAAGGCACAT-------------------------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| ------------------------------------AGGTTGTGAATCTCCCCA---------------------------------------------------------------- | 18 | - | - | 1 | - | |
| ----------------------GAAGGCACATATCGAGGTT----------------------------------------------------------------------------- | 19 | - | 1 | - | - | |
| ---------------------------------------------------CCAGCCCCAGTTGAGGTTGAG---------------------------------------------- | 21 | - | - | 1 | - | |
| ----------------GGGAGTGAAGGCACATATCGA--------------------------------------------------------------------------------- | 21 | - | - | 1 | - | |
| ---------------AGGGAGTGAAGGCACATATC----------------------------------------------------------------------------------- | 20 | - | 1 | - | - | |
| ------------------------AGGCACATATCGAGGTTGT--------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------GGGAGTGAAGGCACATATC----------------------------------------------------------------------------------- | 19 | - | - | 1 | - | |
| ----------------------------------------------------------------------AGACTTGCTTAAGCCACTT----------------------------- | 19 | - | - | - | 1 | |
| rat | gagagccggggaaaAAGGGAGTGAAGGCACATATCGAGGTTGTGAATCTCCCCAGCCCCAGTTGAGGTTGAGACTTGCTTAAGCCACTTgaggccaattttttttttttttggttctt | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((((..((((((((((((...(((.....((((((((((((.((((((((((....)))).))..)))).))))...))))..)))).))).))))))))))))..)))))))) | 0.930 -40.10 | ||||
| rat | chromosome:2:191182714:191182831:-1 | intergenic |
sblock6727 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.47/0.62 | 18/26/0.38 | 0.0 1.2 | 0.0 3.3 | 1 12 | 0 0 | 1 2 | 0 0 | 2 19 | 20 -4 | 5arm 3arm | 1 1 | nd nd | 0.22 0.23 | 2 3 | 13 | 2 | 21 | 0 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------GGUGCUA---------------------------------------- | 8 | novel | |
| seed | ----------------------------------------------GCUAAAG------------------------------------- | 3 | novel | |
| seed | -------------------------------------------------AAAGUGU---------------------------------- | 1 | novel | |
| seed | ---AGGCAUG-------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ------------------------------------------TGGTGCTAAAGTGTGACGT----------------------------- | 19 | 2 | 2 | |
| ---------------------------------------------TGCTAAAGTGTGACGTCCCCAG----------------------- | 22 | - | 2 | |
| ------------------------------------------TGGTGCTAAAGTGTGACG------------------------------ | 18 | - | 1 | |
| ------------------------------------------TGGTGCTAAAGTGTGACGTCC--------------------------- | 21 | - | 1 | |
| ------------------------------------------TGGTGCTAAAGTGTGACGTCCCC------------------------- | 23 | - | 1 | |
| ------------------------------------------------TAAAGTGTGACGTCCCCAG----------------------- | 19 | - | 1 | |
| --TAGGCATGGTTTGGGGTG---------------------------------------------------------------------- | 18 | - | 1 | |
| ------------------------------------------TGGTGCTAAAGTGTGACGTCCCCA------------------------ | 24 | - | 1 | |
| ---------------------------------------------TGCTAAAGTGTGACGTCCCCAGCCCC------------------- | 26 | - | 1 | |
| rat | gcTAGGCATGGTTTGGGGTGagaggagtcacatacatggcccTGGTGCTAAAGTGTGACGTCCCCAGCCCCaggctctaagctgatagcg | |||
| ****************************************************************************************** | ||||
| rat | (((((((..((((((((((....((((((((((...((((......))))..))))))).)))...))))))))))....)))..)))). | 1.000 -39.00 | ||
| rat | chromosome:20:5514561:5514650:-1 | intergenic |
sblock6730 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.002 | no | no | 0.32/0.57 | 18/25/0.42 | 0.0 0.0 0.0 4.6 | 0.0 0.0 1.5 4.8 | 4 5 4 17 | 0 0 0 0 | 2 2 3 4 | 0 0 0 0 | 6 13 23 13 | 24 17 1 -22 | 5arm 5arm 5arm 3arm | 1 1 1 1 | nd nd nd nd | 0.32 0.42 0.48 0.26 | 2 4 4 2 | 33 | 6 | -15 | -12 |
| reads | miRBase family seed | |||||||
| seed | --------------GUCUGGU-------------------------------------------------------------------------------- | 6 | novel | |||||
| seed | ------------------------------------------------------AUGGUAG---------------------------------------- | 6 | novel | |||||
| seed | -------CACUUCU--------------------------------------------------------------------------------------- | 5 | novel | |||||
| seed | ------------------------AUUUCAC---------------------------------------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------------------GGUAGUU-------------------------------------- | 4 | novel | |||||
| seed | --------------------------------------------ACUCAAG-------------------------------------------------- | 2 | novel | |||||
| seed | -----------------------------------------------------------AGUUACU----------------------------------- | 1 | novel | |||||
| seed | ------------CUGUCUG---------------------------------------------------------------------------------- | 1 | novel | |||||
| seed | --------------------------------------------------GAAUAUG-------------------------------------------- | 1 | novel | |||||
| seed | ----------------------------------------------------------------------GCAAGCU------------------------ | 1 | novel | |||||
| seed | ------------------------------------------------------------------CUCUGCA---------------------------- | 1 | novel | |||||
| seed | -----------------------------------------------CAAGAAU----------------------------------------------- | 1 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T2S1 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| -------------TGTCTGGTGTTATTTCACC--------------------------------------------------------------------- | 19 | - | - | 1 | - | 5 | - | |
| ------TCACTTCTGTCTGGTGTTA---------------------------------------------------------------------------- | 19 | 1 | - | - | - | 4 | - | |
| -------------------------------------------------------TGGTAGTTACTCTCTGCAAG-------------------------- | 20 | - | - | - | 1 | 3 | - | |
| -----------------------------------------------------TATGGTAGTTACTCTCTGCA---------------------------- | 20 | 2 | - | - | - | 2 | - | |
| -----------------------TATTTCACCGCTTTCGTTTCT--------------------------------------------------------- | 21 | - | - | - | - | 1 | 1 | |
| -----------------------------------------------------TATGGTAGTTACTCTCTGC----------------------------- | 19 | - | - | - | - | 1 | - | |
| -----------------------TATTTCACCGCTTTCGTTTCTACTC----------------------------------------------------- | 25 | - | - | - | - | 1 | - | |
| -------------------------------------------TACTCAAGAATATGGTAG---------------------------------------- | 18 | - | 1 | - | - | - | - | |
| -----------------------------------------------------TATGGTAGTTACTCTCTG------------------------------ | 18 | - | - | - | - | 1 | - | |
| -------------------------------------------------AGAATATGGTAGTTACTCTCTG------------------------------ | 22 | - | - | - | - | 1 | - | |
| ----------------------------------------------------------TAGTTACTCTCTGCAAGCTACACCC------------------ | 25 | - | - | - | - | 1 | - | |
| ---------------------------------------------------------------------TGCAAGCTACACCCAGCTA------------- | 19 | 1 | - | - | - | - | - | |
| -----------------------TATTTCACCGCTTTCGTTTCTAC------------------------------------------------------- | 23 | - | - | - | 1 | - | - | |
| -----------------------------------------------------------------TCTCTGCAAGCTACACCCAGC--------------- | 21 | 1 | - | - | - | - | - | |
| ----------------------------------------------TCAAGAATATGGTAGTTACTCTCTG------------------------------ | 25 | - | - | - | - | 1 | - | |
| -----------TCTGTCTGGTGTTATTTCAC---------------------------------------------------------------------- | 20 | - | - | - | - | 1 | - | |
| -------------------------------------------TACTCAAGAATATGGTAGT--------------------------------------- | 19 | - | - | - | - | 1 | - | |
| rat | ggacagTCACTTCTGTCTGGTGTTATTTCACCgctttcgtttctactcaagaaTATGGTAGTTACTCTCTGCAAGctacacccagctaagctggctgtcca | |||||||
| ***************************************************************************************************** | ||||||||
| rat | ((((((((((((..((..(((((..(((....((....((..((((.((......))))))..)).....)))))..)))))..)).))).))))))))). | 0.560 -30.80 | ||||||
| rat | chromosome:20:5514977:5515077:-1 | intergenic |
sblock6773 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.008 | no | no | 0.33/0.63 | 18/24/0.65 | 11.2 0.0 0.0 | 9.1 0.0 0.4 | 12 1 7 | 0 0 0 | 1 1 2 | 0 0 0 | 3 41 50 | 10 -6 -18 | 5arm 5arm_loop_3arm 3arm_loop | 3 3 3 | nd nd nd | 0.21 0.37 0.36 | 1 5 5 | 23 | 2 | 0 | 16 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------GGCACUA----------------------------------------------------------- | 8 | novel | |
| seed | ------------------CCCUUGG-------------------------------------------------------------------------------------------- | 3 | novel | |
| seed | --------CCCAGUG------------------------------------------------------------------------------------------------------ | 2 | novel | |
| seed | -----------------------GGUAAGC--------------------------------------------------------------------------------------- | 2 | novel | |
| seed | ----GAGCCCC---------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------AAGCACC------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------AAGUAAA----------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------UAAGUAA------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------GAUGGGA-------------------------------------------------------------------- | 1 | novel | |
| seed | ----------CAGUGGU---------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------UGGUAAG---------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S1 | |||
| --------------------------------------------------TGGCACTAAGTAAATTCCCACA--------------------------------------------- | 22 | 1 | 4 | |
| --------------------------------------------------TGGCACTAAGTAAATTCCCAC---------------------------------------------- | 21 | - | 3 | |
| -----------------TCCCTTGGTAAGCACCGACAAG------------------------------------------------------------------------------ | 22 | - | 2 | |
| ---TGAGCCCCAGTGGTTCCCTTGGT------------------------------------------------------------------------------------------- | 23 | - | 2 | |
| -------CCCCAGTGGTTCCCTTGGT------------------------------------------------------------------------------------------- | 19 | - | 2 | |
| -----------------TCCCTTGGTAAGCACCGACA-------------------------------------------------------------------------------- | 20 | - | 1 | |
| -------------------------TAAGCACCGACAAGAATGA------------------------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TAAGTAAATTCCCACATG------------------------------------------- | 18 | - | 1 | |
| ----------------------TGGTAAGCACCGACAAGAATGA------------------------------------------------------------------------- | 22 | - | 1 | |
| -----------------------------------------TGATGGGAATGGCACTAAG--------------------------------------------------------- | 19 | - | 1 | |
| ----------------------TGGTAAGCACCGACAAGAA---------------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------CTAAGTAAATTCCCACATG------------------------------------------- | 19 | - | 1 | |
| ---------------------TTGGTAAGCACCGACAAGA----------------------------------------------------------------------------- | 19 | - | 1 | |
| ---------CCAGTGGTTCCCTTGGTAAGCACC------------------------------------------------------------------------------------ | 24 | - | 1 | |
| rat | gtcTGAGCCCCAGTGGTTCCCTTGGTAAGCACCGACAAGaatgatgggaaTGGCACTAAGTAAATTCCCACAtgcccttggcttgtagggtgctgtggctactactggctgagcaga | |||
| ********************************************************************************************************************* | ||||
| rat | .((((....((((((((..((......((((((.(((((.(((.(((((((.((.....))..))))))))))........)))))..))))))..))..)))))))).....)))) | 0.600 -43.40 | ||
| rat | chromosome:20:5527114:5527230:-1 | intergenic |
sblock6776 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.005 | no | no | 0.45/0.65 | 18/25/0.46 | 0.0 1.0 3.0 2.1 | 2.8 2.5 1.0 1.6 | 12 2 2 7 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 11 30 35 29 | 23 4 -3 -21 | 5arm 5arm 5arm_loop 3arm | 1 1 1 1 | nd nd nd nd | 0.27 0.28 0.32 0.21 | 2 3 2 2 | 26 | 2 | -21 | -22 |
| reads | miRBase family seed | |||
| seed | ------------CCACUCC------------------------------------------------------------------------------------------------- | 14 | novel | |
| seed | ----------------------------------------------------------------AACAGCU--------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------------------AAAGAAC------------------------------------------------- | 2 | novel | |
| seed | ----------------------------------------------------------CUAAAGA--------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------ACGAGCA------------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------AGGUCAC------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCUAAAG---------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------UGUACGA---------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------AGUGUAC------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------AUCCACU--------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------TCCACTCCGTCTGGCTCACCAGTGT-------------------------------------------------------------------------------- | 25 | 6 | - | |
| -----------TCCACTCCGTCTGGCTCA--------------------------------------------------------------------------------------- | 18 | 4 | - | |
| -----------------------------------------------------------TAAAGAACAGCTGTCCGACAG------------------------------------ | 21 | 2 | - | |
| -----------TCCACTCCGTCTGGCTCACCAG----------------------------------------------------------------------------------- | 22 | 2 | - | |
| ---------TATCCACTCCGTCTGGCTCACCA------------------------------------------------------------------------------------ | 23 | 1 | - | |
| ---------------------------------------------------------TCTAAAGAACAGCTGTCCGACAG------------------------------------ | 23 | 1 | - | |
| -----------TCCACTCCGTCTGGCTCACC------------------------------------------------------------------------------------- | 20 | - | 1 | |
| -----------------------------------TACGAGCAGGTCACAGTGGTGTTCT-------------------------------------------------------- | 25 | 1 | - | |
| ---------------------------------------------------------------GAACAGCTGTCCGACAGGCCTCCA----------------------------- | 24 | 1 | - | |
| --------------------------------------------------------TTCTAAAGAACAGCTGTCCGACAG------------------------------------ | 24 | 1 | - | |
| --------------------------------GTGTACGAGCAGGTCACA------------------------------------------------------------------ | 18 | 1 | - | |
| ------------------------------CAGTGTACGAGCAGGTCACAGTGGT------------------------------------------------------------- | 25 | 1 | - | |
| ---------------------------------------------------------------GAACAGCTGTCCGACAGG----------------------------------- | 18 | 1 | - | |
| -----------TCCACTCCGTCTGGCTCACCAGT---------------------------------------------------------------------------------- | 23 | 1 | - | |
| -----------------------------------------CAGGTCACAGTGGTGTTCTAA------------------------------------------------------ | 21 | 1 | - | |
| ---------------------------------------------------------TCTAAAGAACAGCTGTCCGA--------------------------------------- | 20 | 1 | - | |
| rat | tgcagggcctaTCCACTCCGTCTGGCTCACCAGTGTacgagcaggtcacagtggtgttcTAAAGAACAGCTGTCCGACAGgcctccataggaagccagagggcctggtccttgcat | |||
| ******************************************************************************************************************** | ||||
| rat | (((((((.....(((..((.(((((((..((.(((...((((..((((((((..(((((....))))))))))..)))..)).))))).)).))))))).))..))).))))))). | 0.990 -48.40 | ||
| rat | chromosome:20:5527534:5527649:-1 | intergenic |
sblock8002 [novel_lenNOK_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_randfoldOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.006 | no | no | 0.32/0.57 | 19/26/0.30 | 0.0 3.0 0.0 0.0 0.5 0.0 | 0.0 3.0 0.0 0.0 0.0 0.0 | 1 3 1 1 2 2 | 0 0 0 0 0 0 | 1 1 1 1 2 1 | 0 0 0 0 0 0 | 2 9 31 45 13 8 | 39 22 6 -4 9 21 | 5arm 5arm 5arm 5arm_loop 3arm 3arm | 1 1 1 1 1 1 | nd nd nd nd nd nd | 0.43 0.27 0.48 0.43 0.12 0.32 | 6 3 7 5 3 3 | 10 | 3 | 0 | -18 |
| reads | miRBase family seed | ||||
| seed | -----------------------------------------------------------------------------------------AGCUUCA------------------- | 2 | novel | ||
| seed | ----------CCUGAUU-------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ----------------UUUUGAG-------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------------UCUCAGU------------------------------- | 1 | novel | ||
| seed | ----------------------------------------------GAGAGAC-------------------------------------------------------------- | 1 | novel | ||
| seed | -------------GAUUUUU----------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------UUCCAUU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---UCAUGCU--------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ------------------------------------------------------------------------------CUCAGUC------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------------------------------------------------------------------------TAGCTTCAAGCCCTAGGTT-------- | 19 | - | - | 2 | |
| ---------------------------------------------TGAGAGACTCACAGACCTCCC------------------------------------------------- | 21 | - | - | 1 | |
| -----------------------------------------------------------------------------TCTCAGTCATCTAGCTTCAAGCCCT------------- | 25 | - | 1 | - | |
| -------------------------------TTTCCATTTGCAGCTGAGAGACTCA----------------------------------------------------------- | 25 | 1 | - | - | |
| ----------------------------------------------------------------------------TTCTCAGTCATCTAGCTTCAAGCCCT------------- | 26 | - | - | 1 | |
| ---------------TTTTTGAGGCTAGACATTTCCATTT--------------------------------------------------------------------------- | 25 | - | - | 1 | |
| ---------TCCTGATTTTTGAGGCTAGACA------------------------------------------------------------------------------------ | 22 | - | - | 1 | |
| --CTCATGCTCCTGATTTTTGAG-------------------------------------------------------------------------------------------- | 21 | 1 | - | - | |
| ------------TGATTTTTGAGGCTAGACA------------------------------------------------------------------------------------ | 19 | - | - | 1 | |
| rat | ccCTCATGCTCCTGATTTTTGAGGCTAGACATTTCCATTTGCAGCTGAGAGACTCACAGACCTCCCaggctggtccTTCTCAGTCATCTAGCTTCAAGCCCTAGGTTtccagggc | ||||
| ******************************************************************************************************************* | |||||
| rat | ((((......((((...((((((((((((..........((..((((((((((...(((.((.....))))))))..)))))))))))))))))))))...)))).....)))). | 0.430 -36.80 | |||
| rat | chromosome:3:76953495:76953609:1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH (14 loci)
sblock10658 [novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.112 | no | no | 0.16/0.40 | 19/23/0.15 | 0.0 0.0 | 0.0 0.0 | 4 4 | 0 0 | 2 2 | 0 0 | 13 21 | 18 12 | 5arm 3arm | 7 7 | nd nd | 0.21 0.42 | 4 4 | 13 | 3 | -7 | -11 |
| reads | miRBase family seed | ||||
| seed | --------------GGUGUUU------------------------------------------------------------------------------------- | 5 | novel | ||
| seed | -------------------------------------------------------------------GUCACUA-------------------------------- | 4 | novel | ||
| seed | -------------------------------------------------------------------------AUUUGCA-------------------------- | 2 | novel | ||
| seed | ---------------------------------------------------------------GACUGUC------------------------------------ | 1 | novel | ||
| seed | ---------------------------------------------------------------------CACUAUU------------------------------ | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| -------------TGGTGTTTTATGTTTGCAT-------------------------------------------------------------------------- | 19 | - | 1 | 4 | |
| ------------------------------------------------------------------TGTCACTATTTGCACAAAT--------------------- | 19 | - | - | 4 | |
| ------------------------------------------------------------------------TATTTGCACAAATATTTTT--------------- | 19 | 1 | - | 1 | |
| --------------------------------------------------------------TGACTGTCACTATTTGCACA------------------------ | 20 | - | - | 1 | |
| --------------------------------------------------------------------TCACTATTTGCACAAATATTTTT--------------- | 23 | - | - | 1 | |
| rat | gctgaggatattcTGGTGTTTTATGTTTGCATagacaaagtcaatggtgtttcaatactttatgacTGTCACTATTTGCACAAATatttttgccccgtcttcctgc | ||||
| ********************************************************************************************************** | |||||
| rat | ((.((((((.....((((....((((((((((((....(((((..(((((....)))))...)))))....)))..))))..)))))...))))..))))))..)) | 0.900 -22.50 | |||
| rat | chromosome:7:17807916:17808021:-1 | intergenic |
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