other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH (14 loci)
sblock5580 [novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.162 | no | no | 0.50/0.65 | 18/24/0.41 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 0.0 | 4 10 1 1 2 | 0 0 0 0 0 | 1 3 1 1 1 | 0 0 0 0 0 | 12 18 38 44 16 | 16 11 -10 -19 5 | 5arm 5arm 5arm_loop_3arm 5arm_loop_3arm 3arm | 1 1 1 1 1 | nd nd nd nd nd | 0.35 0.42 0.60 0.57 0.30 | 3 3 9 9 4 | 22 | 4 | -5 | -4 |
| reads | miRBase family seed | |||||
| seed | -------------------CAGCAGA------------------------------------------------------------------------ | 13 | novel | |||
| seed | -------------AGGACUC------------------------------------------------------------------------------ | 5 | novel | |||
| seed | ---------------------------------------------------------------CCCUACU---------------------------- | 2 | novel | |||
| seed | ---------------------------------------AGGUUUC---------------------------------------------------- | 1 | novel | |||
| seed | ---------------------------------------------CCCAAGA---------------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T4S2 | T5S1 | |||
| ------------------TCAGCAGAAGAGTCGCATC------------------------------------------------------------- | 19 | 1 | 1 | - | 10 | |
| ------------TAGGACTCAGCAGAAGAGTC------------------------------------------------------------------ | 20 | - | - | - | 4 | |
| --------------------------------------------------------------TCCCTACTGCACTGTCCCTG---------------- | 20 | - | - | - | 2 | |
| --------------------------------------TAGGTTTCCCAAGATCCCAG---------------------------------------- | 20 | - | - | - | 1 | |
| ------------------TCAGCAGAAGAGTCGCATCCTAGG-------------------------------------------------------- | 24 | - | - | - | 1 | |
| --------------------------------------------TCCCAAGATCCCAGGGCCTCCCT------------------------------- | 23 | - | - | 1 | - | |
| ------------TAGGACTCAGCAGAAGAG-------------------------------------------------------------------- | 18 | - | - | - | 1 | |
| rat | caaaggcttcccTAGGACTCAGCAGAAGAGTCGCATCctaggtttcccaagatcccagggcctccctactgcactgtccctgcttcctgtcactttgt | |||||
| ************************************************************************************************** | ||||||
| rat | (((((.......(((((...(((((...(((.(((...((((...(((.........)))....)))).))))))....))))))))))...))))). | 0.460 -23.10 | ||||
| rat | chromosome:18:63583190:63583287:-1 | intergenic |
sblock6317 [novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.095 | no | no | 0.39/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 16 | 0 0 | 1 8 | 0 0 | 6 18 | 12 3 | 5arm 3arm | 1 1 | nd nd | 0.44 0.28 | 5 4 | 27 | 8 | -9 | -10 |
| reads | miRBase family seed | |||||||||
| seed | ------------------------------------------------AAAGGUU---------------------------- | 26 | novel | |||||||
| seed | -------GGAAUGU--------------------------------------------------------------------- | 1 | miR-1/206 | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T3S1 | T3S2 | T4S1 | T4S2 | T5S2 | |||
| -----------------------------------------------TAAAGGTTTTTTGGGGCC------------------ | 18 | 12 | 1 | 2 | 4 | 2 | 1 | 1 | 1 | |
| -----------------------------------------------TAAAGGTTTTTTGGGGCCA----------------- | 19 | 2 | - | - | - | - | - | - | - | |
| ------TGGAATGTATGAGGCAAA----------------------------------------------------------- | 18 | - | - | - | - | - | - | 1 | - | |
| rat | agagtttggaatgtatgaggcaaagagccttgggagagatgaaactgTAAAGGTTTTTTGGGGCCatatctggaacagagctt | |||||||||
| *********************************************************************************** | ||||||||||
| rat | .((((((.....(((((...(((((((((((...((........))...)))))))))))....)))))........)))))) | 0.540 -16.72 | ||||||||
| rat | chromosome:2:13377381:13377463:1 | intergenic |
sblock8976 [novel_lenNOK_cloningOK_multiarm_DicerNOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.137 | no | no | 0.37/0.47 | 19/25/0.14 | 0.0 0.0 0.0 0.0 0.0 | 0.0 0.0 0.0 0.0 2.5 | 2 12 1 1 2 | 0 0 0 0 0 | 1 3 1 1 1 | 0 0 0 0 0 | 23 36 41 32 18 | 24 11 5 -5 4 | 5arm 5arm 5arm 3arm_loop 3arm | 2 2 2 3 3 | nd nd nd nd nd | 0.26 0.58 0.65 0.42 0.26 | 4 10 13 4 3 | 21 | 3 | 0 | 0 |
| reads | miRBase family seed | ||||
| seed | -------------------------------------CAAAUGA-------------------------------------------------------------------------- | 13 | novel | ||
| seed | -----------------------------------------------------------------------------GUGACUG---------------------------------- | 2 | miR-134 | ||
| seed | ------------------------GCAAGAA--------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ------------------------------------------GACAUUA--------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------UGGAGCA------------------------------------------------------------------------------- | 1 | novel | ||
| seed | -----------------------------------AGCAAAU---------------------------------------------------------------------------- | 1 | novel | ||
| seed | --------------------------------------------------------------------GAGACAU------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S1 | T5S1 | T5S2 | |||
| ------------------------------------GCAAATGACATTACCTTCC--------------------------------------------------------------- | 19 | - | 12 | 1 | |
| -----------------------TGCAAGAAATGGAGCAAAT---------------------------------------------------------------------------- | 19 | - | 2 | - | |
| -------------------------------ATGGAGCAAATGACATTACCTTCCC-------------------------------------------------------------- | 25 | - | 1 | - | |
| ----------------------------------GAGCAAATGACATTACCTTCCCA------------------------------------------------------------- | 23 | 1 | - | - | |
| -------------------------------------------------------------------GGAGACATGTGTGACTGTT-------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------TGTGACTGTTCTTTGCTTCCTGTT------------------ | 24 | - | 1 | - | |
| -----------------------------------------TGACATTACCTTCCCATAAC--------------------------------------------------------- | 20 | - | 1 | - | |
| ----------------------------------------------------------------------------TGTGACTGTTCTTTGCTTC----------------------- | 19 | - | 1 | - | |
| rat | ctcctgaacaagaccaggtttcctgcaagaaatggaGCAAATGACATTACCTTCCcataacacatgaggagacatgtgtgactgttctttgcttcctgtttgcccaggctgggggaga | ||||
| ********************************************************************************************************************** | |||||
| rat | (((((........((((....((((((((....((((((((.((((.............(((((((......)))))))...)))).))))))))...)))))..)))))))))))). | 0.900 -33.79 | |||
| rat | chromosome:4:119377409:119377526:1 | intergenic |
novel_lenNOK_gcHIGH_multiarm_DicerNOK (14 loci)
sblock11474 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.083 | no | no | 0.70/0.94 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 25 0 | 2 45 | 5arm 3arm | 1 1 | nd nd | 0.06 0.63 | 1 12 | 2 | 2 | 0 | -14 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------------------------------------CCUCCCG------------ | 1 | novel | |
| seed | --------------------------GCCGGGC-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S1 | |||
| -------------------------CGCCGGGCCCTCGGGGCG---------------------------------------------------------------------------- | 18 | - | 1 | |
| ---------------------------------------------------------------------------------------------------GCCTCCCGCTCAGCTTCCAC | 20 | 1 | - | |
| rat | cggggggcggctcccgcgcgcccagCGCCGGGCCCTCGGGGCGgcccgcgctctgcctccccgggggccctggcgaggacactgggggccgcgcgcccgGCCTCCCGCTCAGCTTCCAC | |||
| *********************************************************************************************************************** | ||||
| rat | (((((((((((...(((((.(((((((((((((((((((((.(((.........))).)))))))))))).))))......))))).)).))).)))..))))))))............ | 0.800 -78.10 | ||
| rat | chromosome:7:124036202:124036320:1 | intergenic ## {Repeats: GC_rich 1 62 1 class=Low_complexity,GC_rich 36 54 1 class=Low_complexity} ## {SimpF: oe = 0.79 1 CpG} |
sblock12192 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.943 | no | no | 0.86/1.00 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 8 16 | 28 20 | 5arm 3arm | 9 9 | nd nd | 0.28 0.18 | 2 2 | 2 | 2 | -10 | -6 |
| reads | miRBase family seed | |||
| seed | -------------------------------------------------------------------------------CCGCCUG------------------------------ | 1 | novel | |
| seed | ---------GGGCGGG---------------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| --------GGGGCGGGGCGGCGGCGG------------------------------------------------------------------------------------------ | 18 | 1 | - | |
| ------------------------------------------------------------------------------CCCGCCTGTGCGCCGGAGCGCC---------------- | 22 | - | 1 | |
| rat | gctggggcGGGGCGGGGCGGCGGCGGcatgggcgggatgggactcgtgcggcggcggcccccgggcgcccggctcctcCCCGCCTGTGCGCCGGAGCGCCggcggccgcgttgagc | |||
| ******************************************************************************************************************** | ||||
| rat | (((.((((((.((.((((..((((.(((((((((((..((..(((((.(((.((....))))).)))...))..))..)))))))))))))))..)).)).))..)))).)).))) | 0.580 -67.10 | ||
| rat | chromosome:9:22247446:22247561:-1 | intergenic ## {Repeats: GC_rich 2 20 -1 class=Low_complexity,GC_rich 1 63 -1 class=Low_complexity,GC_rich 11 33 -1 class=Low_complexity,dust 22247536 22247554 0 class=dust,GC_rich 1 24 -1 class=Low_complexity} ## {SimpF: -1 Eponine} |
sblock1794 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.461 | no | no | 0.61/0.94 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 2 6 1 | 13 11 15 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.28 0.33 0.26 | 2 3 2 | 3 | 2 | -3 | -5 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------------------GAUGGCU------------ | 1 | novel | |
| seed | ---CGCCGCC-------------------------------------------------------------- | 1 | novel | |
| seed | -------------------------------------------------CCUAGAU---------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T2S2 | |||
| --GCGCCGCCCCCGCCGGGA---------------------------------------------------- | 18 | - | 1 | |
| ------------------------------------------------GCCTAGATGGCTGGGGAA------ | 18 | 1 | - | |
| ----------------------------------------------------AGATGGCTGGGGAAGGTCC- | 19 | 1 | - | |
| rat | cgGCGCCGCCCCCGCCGGGAgggggactggacgcgagcgccggcctagGCCTAGATGGCTGGGGAAGGTCCg | |||
| ************************************************************************ | ||||
| rat | (((.(((..((((((((..((((((.((((.((....)))))))))...)))...)))).))))..)))))) | 0.790 -35.90 | ||
| rat | chromosome:1:86196999:86197070:1 | intergenic ## {Repeats: GC_rich 1 35 1 class=Low_complexity,GC_rich 18 35 1 class=Low_complexity} |
sblock3033 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.293 | no | no | 0.71/0.95 | 19/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 15 | 3 5 | 5arm 3arm | 1 1 | nd nd | 0.11 0.33 | 1 2 | 2 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------GACGGAG---------------------------- | 1 | novel | |
| seed | -----------GGGCGGG-------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| ----------GGGGCGGGTGCGGGCCGGC--------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------AGACGGAGCTGCGCCCCAGTC--------------- | 21 | 1 | - | |
| rat | cgggcggggcGGGGCGGGTGCGGGCCGGCgcagcaggggtgcgcAGACGGAGCTGCGCCCCAGTCgcagccaaagaccct | |||
| ******************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000058274 ENSRNOG00000001764 RGD1309443_predicted | |||
| rat | .(((...(((..(((((((((((.((((((((.......)))))...)))..))))))))..)))...))).....))). | 0.530 -37.30 | ||
| rat | chromosome:11:81866647:81866726:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000058274|ENSRNOG00000001764 ## Same_strand|Boundary_non-coding|ENSRNOT00000058276|ENSRNOG00000001764 ## ENSRNOG00000001764|protein_coding|RGD1309443_predicted| ## {Repeats: GC_rich 3 22 -1 class=Low_complexity,GC_rich 1 31 -1 class=Low_complexity} |
sblock4203 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.235 | no | no | 0.78/0.95 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 1 | 2 14 | 5arm 3arm | 1 1 | nd nd | 0.22 0.16 | 2 2 | 2 | 2 | 9 | 11 |
| reads | miRBase family seed | |||
| seed | ------------------------------------------------------GGGCCGC------------ | 1 | novel | |
| seed | ---------------CCGUGCC--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T5S1 | T5S2 | |||
| -----------------------------------------------------CGGGCCGCGCAGCCGCGCG- | 19 | 1 | - | |
| --------------GCCGTGCCGGGTCCCTGA----------------------------------------- | 18 | - | 1 | |
| rat | ccgcgcggtccgtcGCCGTGCCGGGTCCCTGAagccctcctgtcactacggccCGGGCCGCGCAGCCGCGCGg | |||
| ************************************************************************* | ||||
| ----------------------------------------------------------------------------------- | ENSRNOT00000003277 ENSRNOG00000002301 Vdp | |||
| ----------------------------------------------------------------------------------- | ENSRNOT00000060651 ENSRNOG00000002301 Vdp | |||
| ----------------------------------------------------------------------------------- | ENSRNOT00000060649 ENSRNOG00000002301 Vdp | |||
| rat | (((((((((....(((.((.(((((((..(((((.....)).)))....))))))))).)))..))))))))) | 0.950 -36.40 | ||
| rat | chromosome:14:17479904:17479976:1 | Opposite_strand|Intronic_coding|ENSRNOT00000003277|ENSRNOG00000002301 ## ENSRNOG00000002301|protein_coding|Vdp|General vesicular transport factor p115 (Protein USO1 homolog) (Transcytosis-associated protein) (TAP) (Vesicle-docking protein). [Source:UniProtKB/Swiss-Prot;Acc:P41542] |
sblock4420 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.274 | no | no | 0.94/1.00 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 12 1 | 13 29 | 5arm 3arm | 1 2 | nd nd | 0.17 0.33 | 1 2 | 2 | 1 | 12 | 11 |
| reads | miRBase family seed | ||
| seed | -------------CAGCCGC-------------------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------------------GCGGGCC----------- | 1 | novel |
| len | cloning frequencies | ||
| T2S1 | |||
| ------------GCAGCCGCGGGCCGGGGC---------------------------------------------------------------------- | 18 | 1 | |
| ---------------------------------------------------------------------------------GGCGGGCCGGGCCGGGCG- | 18 | 1 | |
| rat | cccgcaaggtggGCAGCCGCGGGCCGGGGCgcgggcgggcctgaggtcacagcaggtcggctccaggcgctggcctgcccaGGCGGGCCGGGCCGGGCGg | ||
| **************************************************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000010103 ENSRNOG00000007246 RGD1562692_predicted | ||
| rat | .((((..(((.(((.((((((((((((.((..((((.((((((.........)))))).)).))..)).)))))))))...)))..)))..)))..)))) | 0.930 -60.80 |
| rat | chromosome:15:12758498:12758597:-1 | Same_strand|Intronic_non-coding|ENSRNOT00000010103|ENSRNOG00000007246 ## ENSRNOG00000007246|protein_coding|RGD1562692_predicted| ## {Repeats: GC_rich 1 26 -1 class=Low_complexity,GC_rich 12 26 -1 class=Low_complexity,GC_rich 35 52 -1 class=Low_complexity,GC_rich 1 52 -1 class=Low_complexity} ## {SimpF: oe = 0.84 -1 CpG} |
sblock4618 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.770 | no | no | 0.94/1.00 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 22 | 24 10 | 5arm 3arm | 1 1 | nd nd | 0.33 0.28 | 3 2 | 2 | 2 | -11 | -8 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------UCCCGCG-------------------------------- | 1 | novel | |
| seed | ---------------CGGCGGC------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T4S2 | |||
| --------------GCGGCGGCCCGGCCCCGG--------------------------------------------------------------------------------- | 18 | - | 1 | |
| -------------------------------------------------------------------------CTCCCGCGCGGCCCGCGG---------------------- | 18 | 1 | - | |
| rat | ggctgcggacacgaGCGGCGGCCCGGCCCCGGcggtgcggtcggcacgcggggcggcagcatcccggtccgtcCTCCCGCGCGGCCCGCGGaccccgcctcggctccacatcc | |||
| ***************************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000020238 ENSRNOG00000014945 Kpna3 | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000034400 ENSRNOG00000014945 Kpna3 | |||
| rat | ((.((.(((..(((((((.((.((.((...(((.((((((..((...(((((.(((.......))).)))))))..)))))).))).)))).)))))).)))..))).)).)) | 0.990 -58.50 | ||
| rat | chromosome:15:40584752:40584864:1 | Opposite_strand|Intronic_coding|ENSRNOT00000020238|ENSRNOG00000014945 ## ENSRNOG00000014945|protein_coding|Kpna3|karyopherin (importin) alpha 3 [Source:RefSeq_peptide;Acc:NP_001014792] ## {Repeats: GC_rich 1 43 1 class=Low_complexity,GC_rich 1 18 1 class=Low_complexity} ## {SimpF: 1 Eponine,oe = 0.81 1 CpG} |
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