other hairpins
novel_lenNOK_gcHIGH_multiarm_DicerNOK (14 loci)
sblock4823 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.931 | no | no | 0.89/0.95 | 18/19/0.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 2 | 0 0 0 | 1 1 2 | 0 0 0 | 29 23 14 | 8 10 20 | 5arm 3arm 3arm | 1 1 1 | nd nd nd | 0.33 0.11 0.39 | 2 1 5 | 4 | 3 | 3 | 8 |
| reads | miRBase family seed | ||||
| seed | ------------------------------------------------------------------------------------CCAGGCG------------------------ | 2 | novel | ||
| seed | ------------------------------GCGCGCC------------------------------------------------------------------------------ | 1 | novel | ||
| seed | --------------------------------------------------------------------------CGGCGGC---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T4S1 | T5S2 | |||
| -----------------------------------------------------------------------------------GCCAGGCGCGGGGACCGG-------------- | 18 | 1 | 1 | - | |
| -------------------------------------------------------------------------CCGGCGGCGCGCCAGGCGC----------------------- | 19 | - | - | 1 | |
| -----------------------------CGCGCGCCGGCTCGGGGC-------------------------------------------------------------------- | 18 | - | 1 | - | |
| rat | cgggcggcggggcgcgcgggagcacctggCGCGCGCCGGCTCGGGGCccgcgcgccctcctttgtgcgcggacCCGGCGGCGCGCCAGGCGCGGGGACCGGcggcgggagttcgg | ||||
| ******************************************************************************************************************* | |||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000047215 ENSRNOG00000012934 Arhgef7 | ||||
| rat | (((((......((.(((.((.((.((((((..(((((.((.((((..((((((((........)))))))).))))))))))))))))).)).....)).)))))....))))). | 0.950 -67.90 | |||
| rat | chromosome:16:82635146:82635260:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000017947|ENSRNOG00000012934 ## Same_strand|Intronic_coding|ENSRNOT00000047215|ENSRNOG00000012934 ## ENSRNOG00000012934|protein_coding|Arhgef7|Rho guanine nucleotide exchange factor 7 (PAK-interacting exchange factor beta) (Beta-Pix). [Source:UniProtKB/Swiss-Prot;Acc:O55043] ## {Repeats: dust 82635169 82635188 0 class=dust,GC_rich 17 36 -1 class=Low_complexity,GC_rich 11 29 -1 class=Low_complexity,dust 82635160 82635178 0 class=dust,dust 82635214 82635232 0 class=dust,GC_rich 1 36 -1 class=Low_complexity,GC_rich 8 26 -1 class=Low_complexity,GC_rich 1 76 -1 class=Low_complexity} ## {SimpF: oe = 0.96 0 CpG, -1 Eponine} |
sblock5675 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.382 | no | no | 0.89/0.94 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 34 31 | 1 1 | 5arm 3arm | 1 1 | nd nd | 0.11 0.17 | 1 1 | 2 | 2 | 0 | -2 |
| reads | miRBase family seed | |||
| seed | -----------------------------------CCGAGCG---------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------GGGGCCG----------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T4S2 | |||
| ---------------------------------------------------------------------CGGGGCCGGCCGCGCTCG------------------------------- | 18 | - | 1 | |
| ----------------------------------ACCGAGCGCCGCGGCCCCG----------------------------------------------------------------- | 19 | 1 | - | |
| rat | ggcgggctgagcggccccgcctcccgcgtgctgcACCGAGCGCCGCGGCCCCGccgcgcctttaaaccgCGGGGCCGGCCGCGCTCGcgggcacttggcggctggcggcgagcgtgcc | |||
| ********************************************************************************************************************** | ||||
| rat | ((((.(((..((.(((..(((..(((.(((((....(((((((.((((((((((..............)))))))).)).)))))))..))))).))).))).))).)).))).)))) | 0.870 -70.94 | ||
| rat | chromosome:18:53673092:53673209:1 | intergenic ## {Repeats: GC_rich 1 21 1 class=Low_complexity,GC_rich 1 14 1 class=Low_complexity} ## {SimpF: 1 Eponine,oe = 0.86 1 CpG, -1 Eponine} |
sblock5742 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.50/0.94 | 18/18/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 11 | 32 17 | 5arm 3arm | 1 1 | nd nd | 0.50 0.22 | 7 2 | 2 | 2 | -12 | -10 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------GCCGGGC--------------------- | 1 | novel | |
| seed | --CUCCAAC--------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -GCTCCAACAACCTTCAGT----------------------------------------------------------------------------------- | 18 | 1 | - | |
| -------------------------------------------------------------------------GGCCGGGCGGGGAGGGGG----------- | 18 | - | 1 | |
| rat | gGCTCCAACAACCTTCAGTcctcgcactatgatccttttgttcttttatagcaagactgtagaaataggctggGGCCGGGCGGGGAGGGGGcaggcaaggcc | |||
| ****************************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019301 ENSRNOG00000014293 NP_001102364.1 | |||
| rat | ((((.......(((((..(((((((....((..(((...(((.((((((((.....))))))))...))).)))..)).)))))))))))).......)))) | 0.840 -32.04 | ||
| rat | chromosome:19:19827185:19827286:-1 | Same_strand|Intronic_coding|ENSRNOT00000019301|ENSRNOG00000014293 ## ENSRNOG00000014293|protein_coding|NP_001102364.1|naked cuticle 1 homolog [Source:RefSeq_peptide;Acc:NP_001102364] |
sblock5748 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.089 | no | no | 0.69/0.94 | 18/26/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 14 8 | 14 10 | 5arm 3arm | 1 1 | nd nd | 0.17 0.23 | 1 2 | 2 | 2 | -4 | 4 |
| reads | miRBase family seed | |||
| seed | ---------------CCCGGCC---------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------AGGCGCC-------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S2 | T4S2 | |||
| --------------CCCCGGCCCGTCGGGGCG------------------------------------------------------------------ | 18 | - | 1 | |
| ----------------------------------------------------------------CAGGCGCCTGGGCAGGCTGGTACAGA-------- | 26 | 1 | - | |
| rat | gggtcggactttgcCCCCGGCCCGTCGGGGCGcggagggggcgggataatgctttcaggcatccCAGGCGCCTGGGCAGGCTGGTACAGAgctgcctc | |||
| ************************************************************************************************** | ||||
| ------------------------------------------------------------------------------------------------------------ | ENSRNOT00000005122 ENSRNOG00000003747 Asna1 | |||
| rat | (((.(((.(((((...((((((.(((.((((((...((((((..((........))..)).))))..)))))).))).))))))..))))))))))). | 0.910 -49.60 | ||
| rat | chromosome:19:24829720:24829817:-1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000005122|ENSRNOG00000003747 ## ENSRNOG00000003747|protein_coding|Asna1|Asna1 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4G022] |
sblock591 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.521 | no | no | 0.71/1.00 | 18/22/0.50 | 0.0 0.5 1.0 | 0.0 0.0 0.7 | 1 2 3 | 0 0 0 | 1 1 2 | 0 0 0 | 25 26 1 | 16 5 25 | 5arm 3arm 3arm | 9 9 9 | nd nd nd | 0.28 0.16 0.32 | 2 2 4 | 6 | 4 | -2 | 0 |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------------------------UGUGGGG--------------- | 1 | novel | |||
| seed | -----------------------------------------------------------------------------------------CUGUGGG---------------- | 1 | novel | |||
| seed | --------------------------GGGCGGG------------------------------------------------------------------------------- | 1 | novel | |||
| seed | ----------------------------------------------------------------------------------------CCUGUGG----------------- | 1 | novel | |||
| seed | ---------------------------------------------------------------------CCGUGGC------------------------------------ | 1 | novel | |||
| seed | --------------------------------------------------------------------CCCGUGG------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T3S2 | T5S2 | |||
| ---------------------------------------------------------------------------------------GCCTGTGGGGACGGAGGAGTGC--- | 22 | - | - | - | 1 | |
| ----------------------------------------------------------------------------------------CCTGTGGGGACGGAGGAGTGC--- | 21 | - | - | - | 1 | |
| -------------------------------------------------------------------CCCCGTGGCGCCTACCCTC-------------------------- | 19 | 1 | - | - | - | |
| -----------------------------------------------------------------------------------------CTGTGGGGACGGAGGAGTGCGC- | 22 | - | - | 1 | - | |
| --------------------------------------------------------------------CCCGTGGCGCCTACCCTC-------------------------- | 18 | 1 | - | - | - | |
| -------------------------GGGGCGGGGCGGCGGCGG--------------------------------------------------------------------- | 18 | - | 1 | - | - | |
| rat | cggcgcgccggcttcctgcttggcaGGGGCGGGGCGGCGGCGGcgattgtctggcggcctggggcggCCCCGTGGCGCCTACCCTCtGCCTGTGGGGACGGAGGAGTGCGCc | |||||
| **************************************************************************************************************** | ||||||
| .....................................................................................................................>>>>> | ENSRNOT00000018194 ENSRNOG00000013381 Tsg101 | |||||
| rat | .(((((((...(((((..(((((((((((..((((.((.((((.........(((.(((...))).))))))).))))))..))))))))....)))..))))).))))))) | 0.490 -61.80 | ||||
| rat | chromosome:1:97475101:97475212:-1 | intergenic ## {Repeats: dust 97475144 97475146 0 class=dust,dust 97475170 97475188 0 class=dust} |
sblock7589 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.450 | no | no | 0.83/1.00 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 20 | 7 17 | 5arm 3arm | 1 1 | nd nd | 0.28 0.11 | 4 1 | 2 | 1 | 7 | 11 |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------CGGCGCG------------------------------- | 1 | novel |
| seed | -----------------------------GCGCAGG------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------CGCGCAGGGGCCGGAGGA-------------------------------------------------------------------------- | 18 | 1 | |
| ---------------------------------------------------------------------------------GCGGCGCGGGGCGGGCGGG-------------------- | 19 | 1 | |
| rat | tcgcgcctcgcgggcgcacgcgccgcctCGCGCAGGGGCCGGAGGAggccgggcctgtcagaccccgcggccggcctccgaGCGGCGCGGGGCGGGCGGGtgcagcggcttgggctcggc | ||
| ************************************************************************************************************************ | |||
| ..........................................................................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000000184 ENSRNOG00000000170 Slc30a4 | ||
| rat | (((.(((((((..((((.(((.(((((((((((....((((((((.(((((((...........)).)))))..)))))).)).)))))))))))))).)))).)))....)))).))). | 1.000 -76.90 |
| rat | chromosome:3:109665716:109665835:-1 | Same_strand|Boundary_non-coding|ENSRNOT00000000184|ENSRNOG00000000170 ## intergenic ## ENSRNOG00000000170|protein_coding|Slc30a4|Zinc transporter 4 (ZnT-4) (Solute carrier family 30 member 4) (Dri 27 protein). [Source:UniProtKB/Swiss-Prot;Acc:O55174] ## {Repeats: GC_rich 1 20 -1 class=Low_complexity,GC_rich 1 185 -1 class=Low_complexity,GC_rich 55 73 -1 class=Low_complexity} ## {SimpF: 1 Eponine, -1 Eponine} |
sblock9666 [novel_lenNOK_gcHIGH_multiarm_DicerNOK]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.416 | no | no | 0.90/0.95 | 18/22/0.50 | 1.0 0.0 | 1.0 0.0 | 3 1 | 0 0 | 2 1 | 0 0 | 11 24 | 20 13 | 5arm 3arm | 1 1 | nd nd | 0.23 0.17 | 2 1 | 4 | 2 | -7 | -10 |
| reads | miRBase family seed | |||
| seed | ------------GCGCGGG------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------------------CCCCCCG---------------------------------- | 1 | novel | |
| seed | --------------GCGGGCG---------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------CGCGGGC----------------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| -------------------------------------------------------------------------GCCCCCCGCTCCGGCCCG------------------------ | 18 | - | 1 | |
| -----------CGCGCGGGCGCGGGGCGCTGAG---------------------------------------------------------------------------------- | 22 | 1 | - | |
| ------------GCGCGGGCGCGGGGCGCTG------------------------------------------------------------------------------------ | 19 | 1 | - | |
| -------------CGCGGGCGCGGGGCGCTGAGC--------------------------------------------------------------------------------- | 21 | - | 1 | |
| rat | gcggcggcgggCGCGCGGGCGCGGGGCGCTGAGCgcggggctcggggacggcggcgccccccgcctcgcccccGCCCCCCGCTCCGGCCCGaccacgccgcgctcgccgggagcg | |||
| ******************************************************************************************************************* | ||||
| rat | ((..(((((((((((((((..((((.((..(((((.(((((..((((..(((((......)))))...)))).))))).))))))).)))).)).))).))))))))))...)). | 1.000 -82.10 | ||
| rat | chromosome:5:22530355:22530469:1 | intergenic ## {Repeats: dust 22530346 22530353 0 class=dust,dust 22530392 22530415 0 class=dust,GC_rich 82 100 1 class=Low_complexity,GC_rich 1 141 1 class=Low_complexity,GC_rich 20 43 1 class=Low_complexity,trf 14 37 0 class=trf} ## {SimpF: 1 Eponine,oe = 0.96 0 CpG} |
novel_lenNOK_gcHIGH_shortStem_nonpairedHIGH_bulgeHIGH (14 loci)
block69591 [novel_lenNOK_gcHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.042 | no | no | 0.94/0.94 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 31 | 5arm | 1 | nd | 0.50 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----GGCGCCC------------------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S2 | |||
| ----CGGCGCCCCTCCCCCGCC-------------------------------------------------------------------------------------- | 18 | 1 | |
| rat | aaccCGGCGCCCCTCCCCCGCCccccagcaggaggcctgaggccaagctggttaaaaaaaaaagtgcacaggccggctgcagcggctaaggggattagaagagggttg | ||
| ************************************************************************************************************ | |||
| rat | (((((....(((((...((((....((((....((((((..((...(((..((.....))..))))).)))))).))))..))))...))))).........))))). | 0.980 -41.42 |
| rat | chromosome:10:37380407:37380514:1 | intergenic ## {Repeats: dust 37380420 37380432 0 class=dust} |
block103836 [novel_lenNOK_gcHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.705 | no | no | 0.95/0.95 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 3 | 21 | 5arm | 1 | nd | 0.37 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----CCGCCGC------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| ---GCCGCCGCCGCCGCCGACC-------------------------------------------------------------------------------- | 19 | 1 | |
| rat | cccGCCGCCGCCGCCGCCGACCcgggccccgcgcgcccaacgctcttctcacacgcgccgggcgccgcggaggaaccagcgcggggccaccgggcctgcggg | ||
| ****************************************************************************************************** | |||
| ---------------------------------------------------------------------------------------------------------------- | ENSRNOT00000055031 ENSRNOG00000003670 LOC690244 | ||
| rat | (((((.((((((.(((.((....((.((((((((((((..(((...........)))..)))))).)))).))..))..)))))))).....)))..))))) | 0.420 -51.90 |
| rat | chromosome:10:105620590:105620691:1 | Opposite_strand|Intronic_coding|ENSRNOT00000055031|ENSRNOG00000003670 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000004867|ENSRNOG00000003670 ## ENSRNOG00000003670|protein_coding|LOC690244| ## {Repeats: GC_rich 1 38 1 class=Low_complexity,GC_rich 3 22 1 class=Low_complexity,dust 105620570 105620589 0 class=dust} ## {SimpF: 1 Eponine, -1 Eponine} |
block187231 [novel_lenNOK_gcHIGH_shortStem_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.058 | no | no | 1.00/1.00 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 25 | 5arm | 1 | nd | 0.44 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CCCGCCC---------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ----CCCCGCCCCCGGGGCCGG------------------------------------------------------------------------------ | 18 | 1 | |
| rat | ctgtCCCCGCCCCCGGGGCCGGtttcttctgatcattggcgggctccagcttcgggtcccgccccctgtcccgctccccggctcccattgtctccgcaga | ||
| **************************************************************************************************** | |||
| ...................................>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> | ENSRNOT00000001849 ENSRNOG00000001367 Gpc2 | ||
| rat | ((((....((....((((((((........(((....((((((..((......))..))))))....))).......))))))))....))....)))). | 0.810 -36.56 |
| rat | chromosome:12:17864618:17864717:-1 | intergenic |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30915 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.