other hairpins
novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH (14 loci)
sblock6345 [novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.180 | no | no | 0.41/0.60 | 19/22/0.67 | 0.0 0.5 | 0.0 1.0 | 1 2 | 0 0 | 1 2 | 0 0 | 2 0 | 7 23 | 5arm 3arm | 2 3 | nd nd | 0.30 0.57 | 4 7 | 3 | 2 | 11 | 2 |
| reads | miRBase family seed | |||
| seed | ---AGCACUC---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------GAGCCUU-------------- | 1 | novel | |
| seed | ------------------------------------------------------------AGCCUUG------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S1 | T5S2 | |||
| --CAGCACTCTGCACTGACCTC---------------------------------------------------------- | 20 | 1 | - | |
| -----------------------------------------------------------GAGCCTTGATTGAAGATGT-- | 19 | - | 1 | |
| ----------------------------------------------------------AGAGCCTTGATTGAAGATGTGA | 22 | 1 | - | |
| rat | caCAGCACTCTGCACTGACCTCcatgctgagagttcagtttgcaatgtaggtcacataAGAGCCTTGATTGAAGATGTGA | |||
| ******************************************************************************** | ||||
| rat | ((((.((((((....((((((.(((((((......)))).....))).))))))....)))).......))....)))). | 0.400 -19.31 | ||
| rat | chromosome:2:28336994:28337073:1 | intergenic |
sblock6410 [novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.799 | no | no | 0.47/0.67 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 2 | 0 0 | 1 1 | 0 0 | 0 1 | 27 24 | 5arm 3arm | 2 2 | nd nd | 0.53 0.28 | 6 4 | 3 | 2 | 0 | -8 |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------------------------------------CCGAACA----------- | 2 | novel | |
| seed | -ACGUGAA------------------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T3S2 | |||
| -------------------------------------------------------------------------------CCCGAACAGCAAGTGCCG- | 18 | - | 2 | |
| TACGTGAACGGTTTGGTTG------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | TACGTGAACGGTTTGGTTGgatttggctgggtgtagcagttactgaacctcgagatcaaaggacttcttacaaacatctCCCGAACAGCAAGTGCCGt | |||
| ************************************************************************************************** | ||||
| rat | .......(((((...((((...((((..((((((((.((((..(((.........)))...)))).)).....)))))).)))).))))....))))) | 0.530 -21.20 | ||
| rat | chromosome:2:92462431:92462528:1 | intergenic |
sblock6619 [novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.80/0.84 | 19/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 3 2 | 5 4 | 5arm 3arm | 1 1 | nd nd | 0.26 0.35 | 4 3 | 2 | 2 | -1 | 0 |
| reads | miRBase family seed | |||
| seed | -----------------------------------------GCACGGA-------------- | 1 | novel | |
| seed | ----GGAGCCC--------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---CGGAGCCCGGGGACCGAGC---------------------------------------- | 19 | 1 | - | |
| ----------------------------------------CGCACGGACGCGGAGCTCCC-- | 20 | - | 1 | |
| rat | gccCGGAGCCCGGGGACCGAGCgccggacccgccgcctggCGCACGGACGCGGAGCTCCCgc | |||
| ************************************************************** | ||||
| rat | ....((((((((....(((.(((((((.........))))))).)))...))).)))))... | 0.440 -31.20 | ||
| rat | chromosome:2:236314468:236314529:1 | intergenic ## {SimpF: 1 Eponine, -1 Eponine,oe = 0.89 1 CpG} |
sblock7620 [novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.097 | no | no | 0.60/0.72 | 18/20/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 1 | 9 6 | 5arm 3arm | 2 2 | nd nd | 0.28 0.30 | 4 3 | 2 | 2 | 2 | 0 |
| reads | miRBase family seed | |||
| seed | --GGAGAGG-------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------CCACGCU------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------CCCACGCTTTCCCATTTCCC- | 20 | 1 | - | |
| -GGGAGAGGGGCCTGGACA---------------------------------------------------- | 18 | - | 1 | |
| rat | tGGGAGAGGGGCCTGGACAtatttgcagaccatcaacaagcagcctgctcCCCACGCTTTCCCATTTCCCa | |||
| *********************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000009226 ENSRNOG00000006850 NP_001099989.1 | |||
| rat | .(((((((((((.(((........((((................))))...))).))...))).)))))). | 0.540 -19.69 | ||
| rat | chromosome:3:132869171:132869241:-1 | Same_strand|Intronic_coding|ENSRNOT00000009226|ENSRNOG00000006850 ## ENSRNOG00000006850|protein_coding|NP_001099989.1|zinc finger protein 339 [Source:RefSeq_peptide;Acc:NP_001099989] |
sblock9966 [novel_lenNOK_multiarm_DicerNOK_shortStem_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.656 | no | no | 0.53/0.53 | 19/19/0.00 | 0.0 0.0 | 0.0 0.0 | 2 1 | 0 0 | 1 1 | 0 0 | 0 1 | 7 6 | 5arm 3arm | 1 1 | nd nd | 0.21 0.21 | 4 3 | 3 | 2 | -1 | -1 |
| reads | miRBase family seed | |||
| seed | -GUUCUGC----------------------------------------------------------- | 2 | novel | |
| seed | ------------------------------------------------GCAUUGC------------ | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S1 | |||
| GGTTCTGCACATGGTAGTC------------------------------------------------ | 19 | 2 | - | |
| -----------------------------------------------TGCATTGCTGTGTCCCAAC- | 19 | - | 1 | |
| rat | GGTTCTGCACATGGTAGTCacgtccttgctgtctattctctgggttcTGCATTGCTGTGTCCCAACt | |||
| ******************************************************************* | ||||
| ----------------------------------------------------------------------------- | ENSRNOT00000009779 ENSRNOG00000024503 CT025539.18 | |||
| rat | ((((....((((((((((((...(((...............)))...)).))))))))))...)))) | 0.900 -11.56 | ||
| rat | chromosome:6:37019713:37019779:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000035660|ENSRNOG00000024503 ## Opposite_strand|Intronic_coding|ENSRNOT00000009779|ENSRNOG00000024503 ## ENSRNOG00000024503|protein_coding|CT025539.18|4933425L03Rik protein [Source:UniProtKB/TrEMBL;Acc:Q6PGH6] |
novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (14 loci)
sblock1437 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:51247650:51247727:1 | intergenic ## {Repeats: trf 191 193 0 class=trf} |
sblock1462 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:51487714:51487776:1 | intergenic ## {Repeats: trf 125 127 0 class=trf} |
sblock1556 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| ------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| ------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:51892531:51892593:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## {Repeats: trf 124 126 0 class=trf} |
sblock1560 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:51939901:51939978:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| ## {Repeats: trf 191 193 0 class=trf} |
sblock1640 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| ---------------------------------------------------------------------------------------- | ENSRNOT00000059909 ENSRNOG00000030267 RGD1561185_predicted | |||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:52591785:52591862:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000048991|ENSRNOG00000030267 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059909|ENSRNOG00000030267 ## ENSRNOG00000030267|protein_coding|RGD1561185_predicted| ## {Repeats: trf 191 193 0 class=trf} |
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