other hairpins
novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap (14 loci)
sblock1714 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:52913890:52913952:1 | intergenic ## {Repeats: trf 257 257 0 class=trf} |
sblock1717 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:52917292:52917369:1 | intergenic ## {Repeats: trf 290 290 0 class=trf} |
sblock1722 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:52982048:52982110:1 | intergenic ## {Repeats: trf 92 94 0 class=trf} |
sblock324 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:50398152:50398214:-1 | intergenic ## {Repeats: trf 124 126 0 class=trf} |
sblock347 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:50685092:50685169:-1 | intergenic ## {Repeats: trf 184 186 0 class=trf} |
sblock359 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.143 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 9 23 34 26 | 12 5 -11 -3 | 5arm 5arm 3arm_loop 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.33 0.43 0.50 0.20 | 3 3 10 2 | 6 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | ------------------------AAGCAAC------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------ACCUGUC-------------------------------------- | 1 | novel | |
| seed | ----------CCAGAGA--------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------------ACAGAGC--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------------------------------------------------------ACAAAGG---------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------------------TAAGCAACACAGAGCAAACTG------------------------------------------------------------------ | 21 | - | 2 | |
| ----------------------------------------------------------------TACCTGTCCTTGCCTGCCTG-------------------------- | 20 | - | 1 | |
| --------------------------------------------------------CACAAAGGTACCTGTCCTTG---------------------------------- | 20 | - | 1 | |
| ---------ACCAGAGACAGAGCTAAGCAACAC----------------------------------------------------------------------------- | 24 | 1 | - | |
| ---------------GACAGAGCTAAGCAACACAGAG------------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gaaatggatACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGgatagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgtctcc | |||
| ************************************************************************************************************** | ||||
| rat | ((.((((...(((((((..((((...(((...(((.((((...((((((..................)))))))))))))..))).))))..)))))))...)))).)). | 0.880 -27.47 | ||
| rat | chromosome:1:50780414:50780523:-1 | intergenic |
sblock400 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.675 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 16 13 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | -----------------GUGUUCA------------------------------------------------------ | 2 | miR-124* | |
| seed | ------------------------------------------CCUAGAG----------------------------- | 1 | novel | |
| seed | ---------------------------------------AGUCCUA-------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| --------------------------------------TAGTCCTAGAGGGAAATCAG-------------------- | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCTA------------------------------------------ | 20 | - | 1 | |
| ----------------TGTGTTCACTTCTATTCCT------------------------------------------- | 19 | 1 | - | |
| -----------------------------------------TCCTAGAGGGAAATCAGCAAGGGT------------- | 24 | - | 1 | |
| rat | agcaatgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtgaggaatgctg | |||
| ****************************************************************************** | ||||
| rat | ((((.((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)).....)))). | 0.830 -14.90 | ||
| rat | chromosome:1:50917670:50917747:-1 | intergenic ## {Repeats: trf 125 127 0 class=trf} |
sblock419 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.281 | no | no | 0.35/0.50 | 19/24/0.75 | 0.0 1.5 | 0.5 3.5 | 2 2 | 0 0 | 2 1 | 0 0 | 11 3 | -1 -1 | 5arm_loop 3arm | 39 46 | nd nd | 0.37 0.25 | 3 3 | 4 | 2 | 0 | 1 |
| reads | miRBase family seed | |||
| seed | ------------GUGUUCA-------------------------------------------- | 2 | miR-124* | |
| seed | -------------------------------------CCUAGAG------------------- | 1 | novel | |
| seed | ----------------------------------AGUCCUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T4S2 | T5S1 | |||
| -----------TGTGTTCACTTCTATTCCTA-------------------------------- | 20 | - | 1 | |
| ------------------------------------TCCTAGAGGGAAATCAGCAAGGGT--- | 24 | - | 1 | |
| -----------TGTGTTCACTTCTATTCCT--------------------------------- | 19 | 1 | - | |
| ---------------------------------TAGTCCTAGAGGGAAATCAG---------- | 20 | - | 1 | |
| rat | tgtgtctaagtTGTGTTCACTTCTATTCCTAttTAGTCCTAGAGGGAAATCAGCAAGGGTgtg | |||
| *************************************************************** | ||||
| rat | ((..(((..((((..(((.((((((...((....))...)))))))))..))))..)))..)) | 1.000 -12.00 | ||
| rat | chromosome:1:51293059:51293121:-1 | intergenic ## {Repeats: trf 125 127 0 class=trf} |
sblock463 [novel_multiarm_DicerNOK_Multihit_5varHIGH_loopOverlap]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.543 | no | no | 0.43/0.60 | 20/24/1.00 | 3.0 0.0 0.0 0.0 | 2.0 0.0 0.0 0.0 | 2 2 1 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 12 26 31 23 | 12 5 -11 -3 | 5arm 5arm 3arm_loop 3arm_loop | 21 21 21 21 | nd nd nd nd | 0.33 0.43 0.60 0.30 | 3 3 10 2 | 6 | 2 | 0 | -16 |
| reads | miRBase family seed | |||
| seed | ---------------------------AAGCAAC---------------------------------------------------------------------------- | 2 | novel | |
| seed | -------------CCAGAGA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | --------------------------------------------------------------------ACCUGUC----------------------------------- | 1 | novel | |
| seed | -------------------ACAGAGC------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ------------------------------------------------------------ACAAAGG------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------TAAGCAACACAGAGCAAACTG--------------------------------------------------------------- | 21 | - | 2 | |
| ------------ACCAGAGACAGAGCTAAGCAACAC-------------------------------------------------------------------------- | 24 | 1 | - | |
| -----------------------------------------------------------CACAAAGGTACCTGTCCTTG------------------------------- | 20 | - | 1 | |
| -------------------------------------------------------------------TACCTGTCCTTGCCTGCCTG----------------------- | 20 | - | 1 | |
| ------------------GACAGAGCTAAGCAACACAGAG---------------------------------------------------------------------- | 22 | - | 1 | |
| rat | gcagaaatggatACCAGAGACAGAGCTAAGCAACACAGAGCAAACTGggtagaacaaagCACAAAGGTACCTGTCCTTGCCTGCCTGccgcttattttttggatgctgcc | |||
| ************************************************************************************************************** | ||||
| ---------------------------------------------------------------------------<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< | ENSRNOT00000041486 ENSRNOG00000033456 LOC308198 | |||
| rat | ((((......((.(((((((..((((...(((...(((.((((...((..((..................))..)))))))))..))).))))..))))))))).)))). | 0.590 -24.87 | ||
| rat | chromosome:1:52390626:52390735:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000044415|ENSRNOG00000033456 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041486|ENSRNOG00000033456 ## ENSRNOG00000033456|protein_coding|LOC308198| |
novel_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH (14 loci)
sblock1359 [novel_multiarm_DicerNOK_Multihit_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.43/0.45 | 20/22/1.00 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 2 10 8 | 12 3 1 | 5arm 5arm 3arm | 18 18 25 | nd nd nd | 0.45 0.33 0.36 | 6 4 6 | 3 | 1 | -2 | -2 |
| reads | miRBase family seed | ||
| seed | -----------GACAACA-------------------------------------------------- | 1 | novel |
| seed | ---------------------------------------CCUCUAG---------------------- | 1 | novel |
| seed | ---GCAAAGC---------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| --TGCAAAGCAGACAACAGAGA---------------------------------------------- | 20 | 1 | |
| --------------------------------------TCCTCTAGGAAAGTCTCAGTGT-------- | 22 | 1 | |
| ----------AGACAACAGAGATTGGATGAG------------------------------------- | 21 | 1 | |
| rat | ccTGCAAAGCAGACAACAGAGATTGGATGAGgataaaaTCCTCTAGGAAAGTCTCAGTGTctcacagg | ||
| ******************************************************************** | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000044959 ENSRNOG00000023753 Af6 | ||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042807 ENSRNOG00000023753 Af6 | ||
| rat | ((((......(((((...((((((....((((((...))))))......))))))..)))))..)))) | 0.980 -21.00 |
| rat | chromosome:1:48884445:48884512:1 | Same_strand|Boundary_non-coding|ENSRNOT00000060057|ENSRNOG00000023753 ## Same_strand|Intronic_coding|ENSRNOT00000042807|ENSRNOG00000023753 ## ENSRNOG00000023753|protein_coding|Af6|Afadin (Protein Af-6). [Source:UniProtKB/Swiss-Prot;Acc:O35889] |
| Back to summary page | other hairpins: | Page 1 | Jump 10 pages back | Previous page | Page 30919 | Next page | Jump 10 pages forward | Page 31204 |
©2008 InteRNA Genomics B.V.