other hairpins
novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH (13 loci)
block1232372 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.56/0.56 | 18/18/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 4 | 21 | 5arm | 214 | nd | 0.39 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----CUCACUA----------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----GCTCACTACCATCCACGT------------------------------------------------------------------------- | 18 | 1 | |
| rat | gtgaGCTCACTACCATCCACGTgagcgtcactgtgagctcagtaccatccacgtgagcgtcactgtgagctcactacgatccacgtgagcgtcac | ||
| *********************************************************************************************** | |||
| rat | ((((((((((....(((...((((((.((((.(((((((((((.......)).))))).)))).))))))))))...)))....)))))).)))) | 1.000 -42.40 |
| rat | chromosome:2:252850808:252850902:-1 | intergenic ## {Repeats: trf 578 596 0 class=trf} |
block1402233 [novel_lenNOK_Multihit_shortStem_randfoldOK_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.001 | no | no | 0.42/0.42 | 19/19/0.00 | 0.0 | 0.0 | 1 | 0 | 1 | 0 | 2 | 33 | 5arm | 136 | nd | 0.32 | 4 | 1 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ---CAUCCAU--------------------------------------------------------------------------------------------------------- | 1 | novel |
| len | cloning frequencies | ||
| T3S2 | |||
| --TCATCCATGACAACTTTGG---------------------------------------------------------------------------------------------- | 19 | 1 | |
| rat | ggTCATCCATGACAACTTTGGctttcttagaagggctcatgaccacagtccatgtcatcactgccactcagaagactgtgggtggcccttctggaaagctatggcatgatggctg | ||
| ******************************************************************************************************************* | |||
| rat | ((((((.((((.((....((((((((.(((((((((.(((..((((((((..((..............))...)))))))))))))))))))))))))))))).)))))))))). | 0.780 -51.04 |
| rat | chromosome:3:116162828:116162942:-1 | intergenic |
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit (13 loci)
sblock1394 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:51023961:51024060:1 | intergenic |
sblock1471 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.506 | no | no | 0.37/0.58 | 18/23/0.62 | 1.5 0.0 0.0 | 1.0 0.0 0.0 | 2 1 8 | 0 0 0 | 2 1 2 | 0 0 0 | 8 45 26 | 20 -13 0 | 5arm 5arm_loop_3arm 3arm_loop | 27 27 27 | nd nd nd | 0.37 0.44 0.13 | 4 7 1 | 16 | 2 | -16 | -9 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctctacagtcaaaggaccaatattgtggaagggcatctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacttttacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | (((.((((..(((((((...((((....(((.((((..((((.((.((((.......)))))).))))))))))).)))).....))))....)))..)))).))) | 0.850 -25.30 | ||
| rat | chromosome:1:51537664:51537769:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1475 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:51539135:51539234:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1495 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:51597640:51597739:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1603 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:52232141:52232240:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock226 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.069 | no | no | 0.21/0.47 | 19/23/0.25 | 0.0 0.0 0.7 0.0 | 0.0 0.0 0.7 0.0 | 1 1 6 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 26 11 5 | 2 7 18 28 | 5arm 3arm 3arm 3arm | 25 25 25 25 | nd nd nd nd | 0.21 0.37 0.47 0.42 | 2 2 6 3 | 12 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | -------------------------------------------------------------------CUAACAA-------------------------- | 2 | novel | |
| seed | --------------------------------------------------------UCCGUUC------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT----------- | 23 | - | 2 | |
| -------------------------------------------------------TTCCGTTCTTCTCTAACAA-------------------------- | 19 | - | 1 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccaggtttgtcctgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))). | 0.810 -24.10 | ||
| rat | chromosome:1:49951893:49951992:-1 | intergenic |
sblock298 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.506 | no | no | 0.37/0.58 | 18/23/0.62 | 1.5 0.0 0.0 | 1.0 0.0 0.0 | 2 1 8 | 0 0 0 | 2 1 2 | 0 0 0 | 8 45 26 | 20 -13 0 | 5arm 5arm_loop_3arm 3arm_loop | 27 27 27 | nd nd nd | 0.37 0.44 0.13 | 4 7 1 | 16 | 2 | -16 | -9 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------CUGUCUC----------------------------------------- | 8 | novel | |
| seed | -------------------------------------------------------CCUCUGU-------------------------------------------- | 3 | novel | |
| seed | ------------------------------------------------------------GUCUCAG--------------------------------------- | 2 | novel | |
| seed | ------------CAAAGGA--------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ---------AGUCAAA------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ----------------------------------------------CAGGCAA----------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| ---------------------------------------------------------TCTGTCTCAGACCCTCCAAATTG-------------------------- | 23 | - | 8 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTC--------------------------------- | 19 | 2 | - | |
| -----------------------------------------------------------TGTCTCAGACCCTCCAAAT---------------------------- | 19 | - | 2 | |
| ---------------------------------------------TCAGGCAACTCCTCTGTC------------------------------------------- | 18 | - | 1 | |
| --------CAGTCAAAGGACCAATATTG------------------------------------------------------------------------------ | 20 | 1 | - | |
| -----------TCAAAGGACCAATATTGTG---------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------TCCTCTGTCTCAGACCCTCCAAA----------------------------- | 23 | - | 1 | |
| rat | gacctctacagtcaaaggaccaatattgtggaagggcatctgtggtcaggcaactccTCTGTCTCAGACCCTCCAAATTGcaagacttttacgggcactggaagtc | |||
| ********************************************************************************************************** | ||||
| -------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000041575 ENSRNOG00000031160 LOC685793 | |||
| rat | (((.((((..(((((((...((((....(((.((((..((((.((.((((.......)))))).))))))))))).)))).....))))....)))..)))).))) | 0.850 -25.30 | ||
| rat | chromosome:1:50292329:50292434:-1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000049496|ENSRNOG00000031160 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000041575|ENSRNOG00000031160 ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock319 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.040 | no | no | 0.21/0.47 | 19/23/0.25 | 0.0 0.0 0.7 0.0 | 0.0 0.0 0.7 0.0 | 1 1 6 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 26 11 5 | 2 7 18 28 | 5arm 3arm 3arm 3arm | 25 25 25 25 | nd nd nd nd | 0.21 0.58 0.57 0.32 | 2 7 10 3 | 12 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | -------------------------------------------------------------------CUAACAA-------------------------- | 2 | novel | |
| seed | --------------------------------------------------------UCCGUUC------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT----------- | 23 | - | 2 | |
| -------------------------------------------------------TTCCGTTCTTCTCTAACAA-------------------------- | 19 | - | 1 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccaggttagtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.((((((((.....(((..(((((..((((((((.....)))))))).)).)))..)))..........))))))))...)))))..))). | 0.820 -24.46 | ||
| rat | chromosome:1:50355653:50355752:-1 | intergenic |
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