other hairpins
novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit (13 loci)
sblock365 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.21/0.47 | 19/23/0.25 | 0.0 0.0 0.7 0.0 | 0.0 0.0 0.7 0.0 | 1 1 6 1 | 0 0 0 0 | 1 1 2 1 | 0 0 0 0 | 22 26 11 5 | 2 7 18 28 | 5arm 3arm 3arm 3arm | 25 25 25 25 | nd nd nd nd | 0.21 0.37 0.42 0.37 | 2 2 6 3 | 12 | 2 | 16 | 19 |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------------------------AACAAAA------------------------ | 5 | novel | |
| seed | -------------------------------------------------------------------CUAACAA-------------------------- | 2 | novel | |
| seed | --------------------------------------------------------UCCGUUC------------------------------------- | 1 | novel | |
| seed | ----------------------------------------------------------------------ACAAAAU----------------------- | 1 | novel | |
| seed | -----------------------GAGUUGA---------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------AUAAUCU---------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------CAAAAUA---------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| --------------------------------------------------------------------TAACAAAATATAATCTGGT------------- | 19 | 1 | 4 | |
| ------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT----------- | 23 | - | 2 | |
| -------------------------------------------------------TTCCGTTCTTCTCTAACAA-------------------------- | 19 | - | 1 | |
| ----------------------TGAGTTGAAGGCCAAAGTC----------------------------------------------------------- | 19 | - | 1 | |
| ---------------------------------------------------------------------AACAAAATATAATCTGGTT------------ | 19 | - | 1 | |
| ----------------------------------------------------------------------ACAAAATATAATCTGGTTTC---------- | 20 | - | 1 | |
| ----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC----- | 19 | - | 1 | |
| rat | cagcatttgcccaggtttgtgttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactgt | |||
| **************************************************************************************************** | ||||
| rat | (((.(((((.(((((((..(((((((..(((((..((((((((.....)))))))).)).)))..))).))))......)))))))...)))))..))). | 0.830 -27.10 | ||
| rat | chromosome:1:50784657:50784756:-1 | intergenic |
sblock368 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.125 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcgtttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:50786473:50786572:-1 | intergenic |
sblock373 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.072 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcgatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.60 | ||
| rat | chromosome:1:50787859:50787958:-1 | intergenic |
sblock435 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.21/0.47 | 19/23/0.31 | 0.0 0.0 0.0 0.7 0.0 | 0.0 0.0 0.0 0.7 0.0 | 1 1 1 6 1 | 0 0 0 0 0 | 1 1 1 2 1 | 0 0 0 0 0 | 6 23 25 10 4 | 16 2 7 18 28 | 5arm 5arm 3arm 3arm 3arm | 22 25 25 25 25 | nd nd nd nd nd | 0.27 0.21 0.37 0.47 0.42 | 3 2 2 6 3 | 13 | 2 | 16 | 20 |
| reads | miRBase family seed | |||
| seed | ----------------------------------------------------------------------AACAAAA----------------------- | 5 | novel | |
| seed | --------------------------------------------------------------------CUAACAA------------------------- | 2 | novel | |
| seed | ------------------------GAGUUGA--------------------------------------------------------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------CAAAAUA--------------------- | 1 | novel | |
| seed | ---------------------------------------------------------UCCGUUC------------------------------------ | 1 | novel | |
| seed | -----------------------------------------------------------------------ACAAAAU---------------------- | 1 | novel | |
| seed | ------------------------------------------------------------------------------AUAAUCU--------------- | 1 | novel | |
| seed | -------UUGCCCA-------------------------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| ---------------------------------------------------------------------TAACAAAATATAATCTGGT------------ | 19 | 1 | 4 | |
| -------------------------------------------------------------------TCTAACAAAATATAATCTGGTTT---------- | 23 | - | 2 | |
| ----------------------------------------------------------------------AACAAAATATAATCTGGTT----------- | 19 | - | 1 | |
| -----------------------------------------------------------------------ACAAAATATAATCTGGTTTC--------- | 20 | - | 1 | |
| ------TTTGCCCAGGTTTGTCTTGAGT------------------------------------------------------------------------ | 22 | - | 1 | |
| -----------------------TGAGTTGAAGGCCAAAGTC---------------------------------------------------------- | 19 | - | 1 | |
| --------------------------------------------------------TTCCGTTCTTCTCTAACAA------------------------- | 19 | - | 1 | |
| -----------------------------------------------------------------------------TATAATCTGGTTTCAGGTC---- | 19 | - | 1 | |
| rat | tcagcatttgcccaggtttgtcttgagttgaaggccaaagtcaatgcttttgacttttccgttcttcTCTAACAAAATATAATCTGGTTTcaggtcactg | |||
| **************************************************************************************************** | ||||
| rat | .(((.(((((.((((((((((...(((..(((((..((((((((.....)))))))).)).)))..)))..))))......))))))...)))))..))) | 0.840 -23.90 | ||
| rat | chromosome:1:51404282:51404381:-1 | intergenic |
sblock1973 [novel_lenNOK_cloningOK_multiarm_DicerNOK_Multihit]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.963 | no | no | 0.32/0.48 | 19/22/0.67 | 0.5 0.0 0.0 1.0 | 0.5 0.0 0.0 0.5 | 2 7 1 2 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 31 27 8 | 45 13 -4 13 | 5arm 5arm 3arm_loop 3arm | 33 33 33 33 | nd nd nd nd | 0.79 0.48 0.37 0.21 | 12 6 3 2 | 15 | 2 | 0 | 14 |
| reads | miRBase family seed | |||
| seed | --------------------------------GGCAUUA-------------------------------------------------------------------------- | 8 | novel | |
| seed | -------------------------------UGGCAUU--------------------------------------------------------------------------- | 2 | novel | |
| seed | ---------------------------------------------------------------------------------------CUGGAAA------------------- | 1 | novel | |
| seed | -------------------------------------------------------------------------------------UUCUGGA--------------------- | 1 | novel | |
| seed | -UGGUAUA--------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --GGUAUAU-------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | --------------------------------------------------------------------CUUUCUC-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -------------------------------TGGCATTACCAGGTTCTGTGT------------------------------------------------------------- | 21 | - | 7 | |
| ------------------------------ATGGCATTACCAGGTTCTGTGT------------------------------------------------------------- | 22 | - | 2 | |
| --------------------------------------------------------------------------------------TCTGGAAAACGTTTCTGTA-------- | 19 | - | 1 | |
| GTGGTATATGTGTGTGTGG---------------------------------------------------------------------------------------------- | 19 | - | 1 | |
| ------------------------------------------------------------------------------------TTTCTGGAAAACGTTTCTGT--------- | 20 | - | 1 | |
| -------------------------------------------------------------------TCTTTCTCGCTTGATAATT--------------------------- | 19 | 1 | - | |
| -------------------------------TGGCATTACCAGGTTCTGT--------------------------------------------------------------- | 19 | - | 1 | |
| -TGGTATATGTGTGTGTGGT--------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | gtggtatatgtgtgtgtggtaggggtaggaaTGGCATTACCAGGTTCTGTGTtattctgcaaagatatctttctcgcttgataatttctggaaaacgtttctgtattcaacat | |||
| ***************************************************************************************************************** | ||||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000016427 ENSRNOG00000012031 St8sia2 | |||
| rat | .............((((....((..((((((((...((.(((((......((((((..((..(((......))).))..)))))).)))))))..))))))))..))..)))) | 0.470 -18.80 | ||
| rat | chromosome:1:129033478:129033590:1 | Same_strand|Intronic_coding|ENSRNOT00000016427|ENSRNOG00000012031 ## ENSRNOG00000012031|protein_coding|St8sia2|Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II) (Sialyltransferase X) (STX). [Source:UniProtKB/Swiss-Prot;Acc:Q07977] |
novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH (13 loci)
block7902 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.105 | no | no | 0.60/0.67 | 18/20/0.03 | 0.0 | 0.1 | 28 | 0 | 6 | 0 | 4 | -3 | 5arm_loop | 2 | nd | 0.39 | 3 | 36 | 6 | na | na |
| reads | miRBase family seed | |||||||
| seed | -----UCUACUC----------------------------------------- | 36 | novel | |||||
| len | cloning frequencies | |||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----CTCTACTCCCTGCCCCAG------------------------------- | 18 | 7 | 9 | 5 | 2 | 3 | 1 | |
| ----CTCTACTCCCTGCCCCAGT------------------------------ | 19 | 4 | 2 | - | 2 | - | - | |
| ----CTCTACTCCCTGCCCCAGTA----------------------------- | 20 | 1 | - | - | - | - | - | |
| rat | gagcCTCTACTCCCTGCCCCAGTagatcttcaggtgcttgagggaaagggctc | |||||||
| ***************************************************** | ||||||||
| rat | (((((.((..(((((((.((............)).))...))))).))))))) | 0.880 -17.50 | ||||||
| rat | chromosome:10:15730419:15730471:-1 | intergenic |
block144392 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.121 | no | no | 0.39/0.42 | 18/19/0.00 | 0.0 | 0.0 | 8 | 0 | 3 | 0 | 2 | -1 | 5arm_loop | 1 | nd | 0.39 | 3 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---GAAUCUA--------------------------------- | 9 | novel | ||
| seed | --UGAAUCU---------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S2 | T4S2 | T5S2 | |||
| --TGAATCTAACAACAGGCA----------------------- | 18 | 6 | 1 | 2 | |
| -GTGAATCTAACAACAGGCA----------------------- | 19 | 1 | - | - | |
| rat | ggTGAATCTAACAACAGGCAgataaagtctgatgatggccatc | ||||
| ******************************************* | |||||
| rat | ((((...(((.((.(((((.......))))).)).))).)))) | 1.000 -9.10 | |||
| rat | chromosome:11:7540630:7540672:1 | intergenic |
block497883 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.029 | no | no | 0.44/0.55 | 18/21/0.33 | 0.1 | 1.1 | 30 | 0 | 10 | 0 | 3 | -1 | 5arm | 1 | nd | 0.37 | 3 | 30 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----CCAAGUA-------------------------------------- | 27 | novel | |||||||||
| seed | -----CAAGUAA------------------------------------- | 2 | novel | |||||||||
| seed | ------AAGUAAU------------------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---TCCAAGTAATCCAGGAAG---------------------------- | 18 | - | 1 | 2 | 2 | 1 | 3 | 1 | - | 1 | - | |
| ---TCCAAGTAATCCAGGAAGGC-------------------------- | 20 | 1 | 1 | 1 | 1 | - | - | 1 | 2 | - | 1 | |
| ---TCCAAGTAATCCAGGAAGG--------------------------- | 19 | 1 | 2 | - | - | - | 1 | - | 2 | - | 1 | |
| ---TCCAAGTAATCCAGGAAGGCC------------------------- | 21 | - | - | - | - | - | - | 1 | - | - | - | |
| -----CAAGTAATCCAGGAAGGC-------------------------- | 18 | - | - | - | - | - | - | 1 | - | - | - | |
| ----CCAAGTAATCCAGGAAGGC-------------------------- | 19 | 1 | - | - | - | - | - | - | - | - | - | |
| ----CCAAGTAATCCAGGAAGGCC------------------------- | 20 | - | - | - | - | - | - | 1 | - | - | - | |
| rat | gaaTCCAAGTAATCCAGGAAGGCCaaaatgccattggaataggaattcc | |||||||||||
| ************************************************* | ||||||||||||
| rat | ((((((...((.(((((...(((......))).))))).))))).))). | 0.990 -11.20 | ||||||||||
| rat | chromosome:15:61006688:61006736:1 | intergenic |
block582748 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.015 | no | no | 0.50/0.50 | 18/18/0.00 | 0.0 | 0.0 | 20 | 0 | 8 | 0 | 2 | -4 | 3arm_loop | 1 | nd | 0.33 | 3 | 21 | 8 | na | na |
| reads | miRBase family seed | |||||||||
| seed | -----------------AAGGUUU------------ | 21 | novel | |||||||
| len | cloning frequencies | |||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ----------------AAAGGTTTGGTCCTGGAG-- | 18 | 2 | 2 | 4 | 5 | 2 | 2 | 1 | 3 | |
| rat | cgctgaggaccacatcAAAGGTTTGGTCCTGGAGtg | |||||||||
| ************************************ | ||||||||||
| rat | ((((.(((((((.((.....)).)))))))..)))) | 1.000 -13.50 | ||||||||
| rat | chromosome:16:64899144:64899179:1 | intergenic |
block746470 [novel_lenNOK_cloningOK_shortStem_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.050 | no | no | 0.53/0.56 | 18/19/0.00 | 0.0 | 0.0 | 12 | 0 | 5 | 0 | 4 | -1 | 5arm_loop | 1 | nd | 0.32 | 3 | 14 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | -----UCCCACG-------------------------------------- | 14 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T3S1 | T5S1 | T5S2 | |||
| ----TTCCCACGCACATTTCCCA--------------------------- | 19 | 4 | 4 | 1 | 2 | 2 | |
| ----TTCCCACGCACATTTCCC---------------------------- | 18 | 1 | - | - | - | - | |
| rat | tgctTTCCCACGCACATTTCCCAcagggaaggaatgtgctgcccttgcag | ||||||
| ************************************************** | |||||||
| rat | (((.....((.(((((((((((...)))))...)))))))).....))). | 0.980 -15.30 | |||||
| rat | chromosome:18:49299813:49299862:1 | intergenic |
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