other hairpins
novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH (13 loci)
sblock7345 [novel_lenNOK_multiarm_DicerNOK_Multihit_shortStem_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.460 | no | no | 0.48/0.61 | 18/21/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 1 0 | 29 30 | 5arm 3arm | 62 62 | nd nd | 0.50 0.35 | 4 3 | 2 | 2 | -2 | 1 |
| reads | miRBase family seed | |||
| seed | --CCCUGAG----------------------------------------------------------------------------------------------- | 1 | miR-125a/125b/351 | |
| seed | ------------------------------------------------------------------------------------GGUCGCU------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T3S2 | |||
| -----------------------------------------------------------------------------------GGGTCGCTATAACTTGAGGAT | 21 | - | 1 | |
| -TCCCTGAGTGAGAGCCTG------------------------------------------------------------------------------------- | 18 | 1 | - | |
| rat | aTCCCTGAGTGAGAGCCTGttcttggccttgtccttcaggctgtgcccattgtggtagctgagactctctggagaaattggttGGGTCGCTATAACTTGAGGAT | |||
| ******************************************************************************************************** | ||||
| rat | ((((..((((...(((.....((..(((.....(((((((..((((((.....))..))....))..))))))).....)))..))..)))...))))..)))) | 0.500 -29.70 | ||
| rat | chromosome:20:36928996:36929099:1 | intergenic |
novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH (13 loci)
sblock1306 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.150 | no | no | 0.28/0.38 | 18/21/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 19 7 0 | 14 34 42 | 5arm 3arm 3arm | 4 10 12 | nd nd nd | 0.43 0.37 0.76 | 3 7 13 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | ----------------------------------------------------------------------------------------------CCUUUCU------------------ | 1 | novel |
| seed | --------------------CAUCAUA-------------------------------------------------------------------------------------------- | 1 | novel |
| seed | ------------------------------------------------------------------------------------------------------GUCCAAG---------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ---------------------------------------------------------------------------------------------TCCTTTCTTGTCCAAGAAA------- | 19 | 1 | |
| -----------------------------------------------------------------------------------------------------TGTCCAAGAAAATATCAT | 18 | 1 | |
| -------------------TCATCATAGTGTTGGTTCTGT------------------------------------------------------------------------------- | 21 | 1 | |
| rat | ggataaaagcaaagggtaaTCATCATAGTGTTGGTTCTGTatttgccctatatcaacttggttcataaggccaaagaccatgactttgactttTCCTTTCTTGTCCAAGAAAATATCAT | ||
| *********************************************************************************************************************** | |||
| +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043702 ENSRNOG00000034080 RGD1563490_predicted | ||
| rat | (((((..((.((((((......(((.(((..(((.(((......(((.((((((.....)))..))).)))...))))))..))).)))....)))))))))))))............. | 0.750 -24.60 |
| rat | chromosome:1:47857035:47857153:1 | Same_strand|Intronic_non-coding|ENSRNOT00000043702|ENSRNOG00000034080 ## ENSRNOG00000034080|protein_coding|RGD1563490_predicted| |
sblock1368 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000049496 ENSRNOG00000031160 LOC685793 | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000042408 ENSRNOG00000031160 LOC685793 | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059958 ENSRNOG00000030545 LOC685793 | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000049483 ENSRNOG00000030545 LOC685793 | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000039913 ENSRNOG00000030545 LOC685793 | ||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:50082312:50082429:1 | Opposite_strand|Intronic_non-coding|ENSRNOT00000039913|ENSRNOG00000030545 ## Opposite_strand|Boundary_non-coding|ENSRNOT00000059959|ENSRNOG00000030545 ## Same_strand|Boundary_non-coding|ENSRNOT00000050327|ENSRNOG00000031160 ## Same_strand|Intronic_non-coding|ENSRNOT00000042408|ENSRNOG00000031160 ## Opposite_strand|Intronic_coding|ENSRNOT00000059958|ENSRNOG00000030545 ## ENSRNOG00000030545|protein_coding|LOC685793| ## ENSRNOG00000031160|protein_coding|LOC685793| |
sblock1413 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:51063583:51063700:1 | intergenic |
sblock1465 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:51535898:51536015:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1492 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 0 9 24 7 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -GUGCUAG--------------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ----------CCAGUAA------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -----------------------------------------------------------------------GGUGUUU----------------------------------- | 2 | novel | ||
| seed | ---GCUAGGA------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| seed | ---------------------------------------------------------------------------------------GAUAAAC------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ----------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA------------------------ | 19 | - | - | 2 | |
| ---------ACCAGTAACCTATGGAAGA------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| TGTGCTAGGACCAGTAACCT--------------------------------------------------------------------------------------------- | 20 | - | - | 2 | |
| --------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG------- | 20 | - | - | 1 | |
| --TGCTAGGACCAGTAACCTA-------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| rat | TGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcat | ||||
| ***************************************************************************************************************** | |||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||
| rat | .((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))) | 1.000 -31.80 | |||
| rat | chromosome:1:51596282:51596394:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1530 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | ||||
| -------------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | ||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:51818763:51818880:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_coding|ENSRNOT00000048246|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000059938|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1553 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.156 | no | no | 0.35/0.50 | 19/20/0.43 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 1 2 1 | 0 0 0 0 | 2 1 1 1 | 0 0 0 0 | 0 9 24 7 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.50 0.42 0.32 0.35 | 5 3 5 4 | 7 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -GUGCUAG--------------------------------------------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------------------------------------------------------------GGUGUUU----------------------------------- | 2 | novel | |
| seed | ---GCUAGGA------------------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | ----------CCAGUAA------------------------------------------------------------------------------------------------ | 1 | novel | |
| seed | ---------------------------------------------------------------------------------------GAUAAAC------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| ----------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA------------------------ | 19 | - | 2 | |
| TGTGCTAGGACCAGTAACCT--------------------------------------------------------------------------------------------- | 20 | - | 2 | |
| --------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG------- | 20 | - | 1 | |
| --TGCTAGGACCAGTAACCTA-------------------------------------------------------------------------------------------- | 19 | 1 | - | |
| ---------ACCAGTAACCTATGGAAGC------------------------------------------------------------------------------------- | 19 | - | 1 | |
| rat | TGTGCTAGGACCAGTAACCTATGGAAGCcttcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcag | |||
| ***************************************************************************************************************** | ||||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000059938 ENSRNOG00000039174 RGD1563865_predicted | |||
| --------------------------------------------------------------------------------------------------------------------------- | ENSRNOT00000048246 ENSRNOG00000039174 RGD1563865_predicted | |||
| rat | ..(((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..))). | 1.000 -31.20 | ||
| rat | chromosome:1:51891763:51891875:1 | Opposite_strand|Boundary_non-coding|ENSRNOT00000059936|ENSRNOG00000039174 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000048246|ENSRNOG00000039174 ## ENSRNOG00000039174|protein_coding|RGD1563865_predicted| |
sblock1695 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.052 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcattagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:52859450:52859567:1 | intergenic |
sblock231 [novel_lenNOK_multiarm_Multihit_nonpairedHIGH_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.088 | no | no | 0.35/0.50 | 19/20/0.38 | 0.7 0.0 0.0 0.0 | 0.3 0.0 0.0 0.0 | 3 2 2 1 | 0 0 0 0 | 2 2 1 1 | 0 0 0 0 | 2 11 27 10 | 33 26 8 24 | 5arm 5arm 3arm 3arm | 33 33 45 45 | nd nd nd nd | 0.45 0.42 0.32 0.35 | 5 3 5 4 | 8 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ------------CCAGUAA--------------------------------------------------------------------------------------------------- | 2 | novel | ||
| seed | ---GUGCUAG------------------------------------------------------------------------------------------------------------ | 2 | novel | ||
| seed | -------------------------------------------------------------------------GGUGUUU-------------------------------------- | 2 | novel | ||
| seed | -----------------------------------------------------------------------------------------GAUAAAC---------------------- | 1 | novel | ||
| seed | -----GCUAGGA---------------------------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S2 | T5S1 | |||
| ------------------------------------------------------------------------TGGTGTTTTTAGAGTGTGA--------------------------- | 19 | - | - | 2 | |
| -----------ACCAGTAACCTATGGAAGA---------------------------------------------------------------------------------------- | 19 | 1 | - | 1 | |
| --TGTGCTAGGACCAGTAACCT------------------------------------------------------------------------------------------------ | 20 | - | - | 2 | |
| ----TGCTAGGACCAGTAACCTA----------------------------------------------------------------------------------------------- | 19 | - | 1 | - | |
| ----------------------------------------------------------------------------------------TGATAAACTTCAGGTGAATG---------- | 20 | - | - | 1 | |
| rat | tgTGTGCTAGGACCAGTAACCTATGGAAGActtcatgagctcataccactctccacctcactttgtggaagcTGGTGTTTTTAGAGTGTGATAAACTTCAGGTGAATGgatgcattca | ||||
| ********************************************************************************************************************** | |||||
| rat | ((.((((.....(((...((((...((((...((((..((((((((((((.(((((........))))))).)))))).....))))))))....))))))))...)))..)))).)) | 1.000 -32.60 | |||
| rat | chromosome:1:49953235:49953352:-1 | intergenic |
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