other hairpins
novel_lenNOK_multiarm_bulgeHIGH (13 loci)
sblock12576 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.074 | no | no | 0.43/0.61 | 18/21/0.25 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 2 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 35 42 6 | 9 1 25 | 5arm 5arm 3arm | 4 4 4 | nd nd nd | 0.39 0.21 0.52 | 6 4 10 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------------CCCUCUG--------------------------------------------------------------------------- | 2 | novel | |
| seed | --------------------------------------------------------------------------------------------UGUCUAC------------------- | 1 | novel | |
| seed | -------------------------------------------ACAGAAG-------------------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T2S2 | T5S1 | |||
| -----------------------------------TCCCTCTGACAGAAGCGC----------------------------------------------------------------- | 18 | - | 2 | |
| ------------------------------------------GACAGAAGCGCTCCATGAT--------------------------------------------------------- | 19 | - | 1 | |
| -------------------------------------------------------------------------------------------TTGTCTACTAAACTGCCTCAG------ | 21 | 1 | - | |
| rat | tgaagaaagcctccatgttagtgcacttcagaaggTCCCTCTGACAGAAGCGCTCCATGATtttcaaatcagactgtgcttatctgttcctTTGTCTACTAAACTGCCTCAGcttcac | |||
| ********************************************************************************************************************** | ||||
| rat | (((((............((((((.((....(((((.......(((((((((((....(((((....)))))....)))))..))))))))))))).))))))..........))))). | 0.550 -26.76 | ||
| rat | chromosome:9:105106655:105106772:1 | intergenic |
sblock12769 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.090 | no | no | 0.42/0.44 | 18/19/0.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 10 28 | 21 6 | 5arm 3arm | 1 1 | nd nd | 0.37 0.28 | 3 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | -----------AGGAGAC-------------------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------AGGUGUG-------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S2 | |||
| ----------------------------------------------------------------TAGGTGTGCTCATCATCA---------------------------- | 18 | - | 1 | |
| ----------CAGGAGACAAAAAGGGAAA--------------------------------------------------------------------------------- | 19 | 1 | - | |
| rat | agaaagaaacCAGGAGACAAAAAGGGAAAtgaacgagatacctaaaagttaagattcaaagattTAGGTGTGCTCATCATCAtatctagttttgcatgcccttgcatttc | |||
| ************************************************************************************************************** | ||||
| rat | .((((.......((...(((((..(((.((((..((((((((((((..((........))..))))))))).)))....)))).)))..)))))....))......)))) | 0.750 -22.12 | ||
| rat | chromosome:X:24044483:24044592:1 | intergenic |
sblock3333 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.061 | no | no | 0.50/0.53 | 19/20/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 1 1 | 0 0 0 | 1 1 1 | 0 0 0 | 12 18 8 | 10 5 24 | 5arm 5arm 3arm | 1 2 2 | nd nd nd | 0.30 0.21 0.47 | 4 4 5 | 3 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -------------AUCCGUU---------------------------------------------------------------------------- | 1 | novel |
| seed | -------------------UCCUGUA---------------------------------------------------------------------- | 1 | novel |
| seed | ----------------------------------------------------------------------CCCACGU------------------- | 1 | novel |
| len | cloning frequencies | ||
| T5S1 | |||
| ------------------TTCCTGTAAGTGTGGAGCC----------------------------------------------------------- | 19 | 1 | |
| ---------------------------------------------------------------------TCCCACGTCGAGTAACTGA-------- | 19 | 1 | |
| ------------GATCCGTTCCTGTAAGTGTG---------------------------------------------------------------- | 20 | 1 | |
| rat | caaccattactgGATCCGTTCCTGTAAGTGTGGAGCCcttgctgtgcatgggcttcagggtacagcgaaTCCCACGTCGAGTAACTGAgctgttgt | ||
| ************************************************************************************************ | |||
| rat | (((((((((((.(((..(((((((((....((((((((.(((...))).))))))))...))))).)))).....))).))))).))....)))). | 0.940 -32.40 |
| rat | chromosome:12:44295874:44295969:-1 | intergenic |
sblock5787 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.412 | no | no | 0.60/0.78 | 18/20/0.67 | 0.0 0.0 | 0.7 0.0 | 3 3 | 0 0 | 2 1 | 0 0 | 0 19 | 23 1 | 5arm 3arm | 1 1 | nd nd | 0.44 0.25 | 6 4 | 6 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------------------------------------------------CCGUCGG------------------------------- | 3 | novel | |
| seed | -CCGGCGG-------------------------------------------------------------------------------- | 3 | novel | |
| len | cloning frequencies | |||
| T1S1 | T3S1 | |||
| -------------------------------------------------TCCGTCGGGTATCGAAGCCA------------------- | 20 | 3 | - | |
| GCCGGCGGGTTGGCAGTG---------------------------------------------------------------------- | 18 | 2 | - | |
| GCCGGCGGGTTGGCAGTGGT-------------------------------------------------------------------- | 20 | - | 1 | |
| rat | GCCGGCGGGTTGGCAGTGGTggtggcttaggccttgaagggattcagcaTCCGTCGGGTATCGAAGCCAtccttcttgcagcagggta | |||
| **************************************************************************************** | ||||
| rat | (((.((......((((.((.((((((((..(((.(((..((((.....)))).))))))....))))))))))..)))).))..))). | 0.970 -30.70 | ||
| rat | chromosome:19:40768857:40768944:-1 | intergenic |
sblock5960 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.163 | no | no | 0.45/0.61 | 18/22/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 29 4 | 7 30 | 5arm 3arm | 1 1 | nd nd | 0.27 0.39 | 4 3 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------------------AUGCUUU------------------------------------------------------------------------------- | 1 | novel | |
| seed | -----------------------------------------------------------------------------------------------GCUCUAC-------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T5S2 | |||
| ----------------------------------------------------------------------------------------------GGCTCTACGGGTGACATG---- | 18 | - | 1 | |
| -----------------------------GATGCTTTCCTGAATCCTTTGC----------------------------------------------------------------- | 22 | 1 | - | |
| rat | gctgtctgtctgaccccttggattggccaGATGCTTTCCTGAATCCTTTGCgcgcctgttaagtcaccacgcggggttcaggcaggcaaggctaGGCTCTACGGGTGACATGgtgc | |||
| ******************************************************************************************************************** | ||||
| rat | ((....((((....(((.((((((((((...(((((.(((((((((....((((..((......))...))))))))))))).))))).))))))..)))).))).))))....)) | 1.000 -43.30 | ||
| rat | chromosome:2:9909706:9909821:-1 | intergenic |
sblock6386 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.017 | no | no | 0.47/0.65 | 19/23/0.50 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 28 7 | 5 34 | 5arm 3arm | 1 1 | nd nd | 0.22 0.21 | 2 4 | 2 | 1 | na | na |
| reads | miRBase family seed | ||
| seed | -----------------------------------------------------------------------------------------------GGCAUGG------------------ | 1 | novel |
| seed | -----------------------------GUGCGCU------------------------------------------------------------------------------------ | 1 | novel |
| len | cloning frequencies | ||
| T1S1 | |||
| ----------------------------------------------------------------------------------------------TGGCATGGACTTGGTAGAA------- | 19 | 1 | |
| ----------------------------GGTGCGCTATGTGAGGGAGCTGG--------------------------------------------------------------------- | 23 | 1 | |
| rat | ggtcaggttctttagtctgtggctccctGGTGCGCTATGTGAGGGAGCTGGctgtcgtaagagttcggctccagaacatcactgagtccatcccTGGCATGGACTTGGTAGAAtttgata | ||
| ************************************************************************************************************************ | |||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000019524 ENSRNOG00000014550 NP_001101141.1 | ||
| rat | .((((((((((..(((((((.(((....((((.(((..((((.((((((((...((....))..))))))))......))))..))).))))...))))))))))....)))))))))). | 0.560 -45.30 |
| rat | chromosome:2:53401688:53401807:1 | Same_strand|Intronic_coding|ENSRNOT00000019524|ENSRNOG00000014550 ## ENSRNOG00000014550|protein_coding|NP_001101141.1| |
sblock991 [novel_lenNOK_multiarm_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.064 | no | no | 0.37/0.45 | 18/20/0.33 | 0.0 0.0 0.0 | 0.0 0.0 0.0 | 1 3 2 | 0 0 0 | 1 2 1 | 0 0 0 | 25 28 5 | 19 15 28 | 5arm 5arm 3arm | 1 1 1 | nd nd nd | 0.50 0.37 0.25 | 6 6 4 | 6 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------------------ACCAGCA------------------------------------------------------------------------------------ | 3 | novel | ||
| seed | ------------------------------------------------------------------------------------------------GGAAAGU----------------- | 2 | novel | ||
| seed | --------------------------AAUACCA--------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T2S2 | T3S2 | T5S1 | |||
| ----------------------------TACCAGCAAATCGCTTTTT------------------------------------------------------------------------- | 19 | - | 1 | 2 | |
| -----------------------------------------------------------------------------------------------TGGAAAGTGGACTTAGCTTC----- | 20 | - | - | 2 | |
| -------------------------CAATACCAGCAAATCGCT----------------------------------------------------------------------------- | 18 | 1 | - | - | |
| rat | cagtggaggtcgactttgaacttgaCAATACCAGCAAATCGCTTTTTttccagataaggggttgtgaacccacctggggatgaggcctggtcttaTGGAAAGTGGACTTAGCTTCgctgg | ||||
| ************************************************************************************************************************ | |||||
| rat | (((((((((((.(((((...((.......(((((......(((((.(((((((.....((((.....))))..))))))).)))))))))).....))))))).)))....)))))))). | 0.940 -39.10 | |||
| rat | chromosome:1:208479312:208479431:-1 | intergenic |
novel_multiarm_loopOverlap_bulgeHIGH (13 loci)
block988382 [novel_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.020 | no | no | 0.25/0.26 | 19/23/0.75 | 0.0 0.0 | 0.0 1.0 | 1 3 | 0 0 | 1 2 | 0 0 | 6 11 | -4 -13 | 5arm_loop_3arm 5arm_loop_3arm | 1 1 | nd nd | 0.37 0.30 | 4 4 | 4 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------CUGUAUA----------------------------- | 3 | novel | |
| seed | -------ACGAUCU---------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------TCTGTATATATTGTTATCGTACA-------------- | 23 | - | 2 | |
| -----------TCTGTATATATTGTTATCGT----------------- | 20 | 1 | - | |
| ------TACGATCTGTATATATTGT----------------------- | 19 | - | 1 | |
| rat | taggttTACGATCTGTATATATTGTTATCGTACAtcttggcaacctac | |||
| ************************************************ | ||||
| rat | ((((((..(((..((((((((....))).)))))..)))..)))))). | 1.000 -11.30 | ||
| rat | chromosome:1:102758846:102758893:1 | intergenic |
block1438415 [novel_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.445 | no | no | 0.60/0.67 | 20/21/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 2 7 | 3 -3 | 5arm 5arm_loop_3arm | 1 1 | nd nd | 0.30 0.43 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---CUAUACG---------------------------------------- | 1 | novel | |
| seed | --------CGGUCUC----------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| --CCTATACGGTCTCGGGACAC---------------------------- | 20 | - | 1 | |
| -------ACGGTCTCGGGACACAGCCTC---------------------- | 21 | 1 | - | |
| rat | ccCCTATACGGTCTCGGGACACAGCCTCgctgctggagtgtgtggttgga | |||
| ************************************************** | ||||
| rat | ((.(((((((.((.(((....((((...))))))))).)))))))..)). | 0.900 -15.40 | ||
| rat | chromosome:3:10354521:10354570:1 | intergenic |
block1661774 [novel_multiarm_loopOverlap_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.439 | no | no | 0.41/0.57 | 21/22/1.00 | 0.0 0.0 | 0.0 0.0 | 1 1 | 0 0 | 1 1 | 0 0 | 40 21 | -18 2 | 5arm_loop_3arm 3arm | 2 2 | nd nd | 0.45 0.29 | 4 4 | 2 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ---------------------------------------------------UCACGAU---------------------------------- | 1 | novel | |
| seed | -----------------------------------------GAAGAAA-------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T3S1 | T3S2 | |||
| --------------------------------------------------GTCACGATCACATGCCAGGCA--------------------- | 21 | - | 1 | |
| ----------------------------------------GGAAGAAATTGTCACGATCACA------------------------------ | 22 | 1 | - | |
| rat | tccagatgacacagtctcctgcctccctgtctgcatctctGGAAGAAATTGTCACGATCACATGCCAGGCAagccaggacattggtaattgg | |||
| ******************************************************************************************** | ||||
| ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ | ENSRNOT00000043962 ENSRNOG00000038318 | |||
| rat | .((((...((.((((.(((((.((...(((((((((.(((((((....)).))).))....)))).))))))).))))).))))))..)))) | 0.950 -23.60 | ||
| rat | chromosome:4:100256277:100256368:1 | Same_strand|Intronic_coding|ENSRNOT00000043962|ENSRNOG00000038318 ## ENSRNOG00000038318|protein_coding|| |
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