miR-Intess: classification

other hairpins

novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH (12 loci)

block354523 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.126	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	20	-2	3arm	29	nd	0.35	3	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGGAUGU--------------------------------	1	novel
seed	-----------------------------------------------------CUUGAGG------------------------------------	1	miR-327
		len	cloning frequencies
			T3S1	T4S1
	--------------------------------------------------------GAGGATGTTCCCCAACTCTG--------------------	20	-	1
	----------------------------------------------------CCTTGAGGATGTTCCCCAACTCT---------------------	23	1	-
rat	aaggctccagcttgtaaggcctagtcttagaaggcacatctcaaacctacctCCTTGAGGATGTTCCCCAACTCTGcccacgactcaccaagcctt
	************************************************************************************************
rat	((((((..((.((((..(((..(((.......((.(((((((((..........))))).)))).))...)))..))).)))))).....))))))	0.470 -20.20

rat

chromosome:14:49781492:49781587:-1

intergenic

block1641631 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.255	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	6	-2	3arm	29	nd	0.35	3	2	2	na	na

		reads	miRBase family seed
seed	-----------------------------------------------AGGAUGU------------------	1	novel
seed	-------------------------------------------CUUGAGG----------------------	1	miR-327
		len	cloning frequencies
			T3S1	T4S1
	------------------------------------------CCTTGAGGATGTTCCCCAACTCT-------	23	1	-
	----------------------------------------------GAGGATGTTCCCCAACTCTG------	20	-	1
rat	cttgtaaggcctagtcttagaaggcacatctcaaacctacctCCTTGAGGATGTTCCCCAACTCTGcccaag
	************************************************************************
	----------------------------------------------------------------------------------	ENSRNOT00000051405 ENSRNOG00000032252 LOC681850
	----------------------------------------------------------------------------------	ENSRNOT00000044814 ENSRNOG00000039248
	----------------------------------------------------------------------------------	ENSRNOT00000048256 ENSRNOG00000039247 Q4QQT1_RAT
rat	((((...(((..(((.......((.(((((((((..........))))).)))).))...)))..)))))))	0.550 -13.60

rat

chromosome:4:57834035:57834106:1

Opposite_strand|Boundary_non-coding|ENSRNOT00000047545|ENSRNOG00000032252 ## Opposite_strand|Intronic_coding|ENSRNOT00000048256|ENSRNOG00000039247 ## Opposite_strand|Intronic_non-coding|ENSRNOT00000051405|ENSRNOG00000032252 ## ENSRNOG00000039248|protein_coding|| ## ENSRNOG00000032252|protein_coding|LOC681850|LOC501224 protein. [Source:UniProtKB/TrEMBL;Acc:Q0P5Q7] ## ENSRNOG00000039247|protein_coding|Q4QQT1_RAT|LOC301748 protein (Fragment). [Source:UniProtKB/TrEMBL;Acc:Q4QQT1]

block2469253 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.144	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	20	-2	3arm	29	nd	0.35	3	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGGAUGU--------------------------------	1	novel
seed	-----------------------------------------------------CUUGAGG------------------------------------	1	miR-327
		len	cloning frequencies
			T3S1	T4S1
	--------------------------------------------------------GAGGATGTTCCCCAACTCTG--------------------	20	-	1
	----------------------------------------------------CCTTGAGGATGTTCCCCAACTCT---------------------	23	1	-
rat	aaggctcctgcttgtaaggcctagtcttagaaggcacatctcaaacctacctCCTTGAGGATGTTCCCCAACTCTGcccacgactcaccaagcctt
	************************************************************************************************
rat	((((((..((.((((..(((..(((.......((.(((((((((..........))))).)))).))...)))..))).))))..))...))))))	0.460 -20.20

rat

chromosome:9:5606119:5606214:-1

intergenic

block2469325 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.031	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	20	-2	3arm	29	nd	0.35	3	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGGAUGU--------------------------------	1	novel
seed	-----------------------------------------------------CUUGAGG------------------------------------	1	miR-327
		len	cloning frequencies
			T3S1	T4S1
	--------------------------------------------------------GAGGATGTTCCCCAACTCTG--------------------	20	-	1
	----------------------------------------------------CCTTGAGGATGTTCCCCAACTCT---------------------	23	1	-
rat	aaggctcctgattgtaaggcctagtcttagaaggcacatctcaaacctacctCCTTGAGGATGTTCCCCAACTCTGcccacgactcaccaagcctt
	************************************************************************************************
	----------------------------------------------------------------------------------------------------------	ENSRNOT00000046551 ENSRNOG00000040154 LOC685769
	---------------------------------------------------------------------------------------------<<<<<<<<<<<<<	ENSRNOT00000046852 ENSRNOG00000033341 Q66H26_RAT
rat	((((((..(((((((..(((..(((.......((.(((((((((..........))))).)))).))...)))..))).)))).)))...))))))	0.850 -22.90

rat

chromosome:9:5699962:5700057:-1

block2469645 [novel_Multihit_5varHIGH_loopOverlap_nonpairedHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.144	no	no	0.52/0.55	20/23/1.00	2.0	0.5	2	0	2	0	20	-2	3arm	29	nd	0.35	3	2	2	na	na

		reads	miRBase family seed
seed	---------------------------------------------------------AGGAUGU--------------------------------	1	novel
seed	-----------------------------------------------------CUUGAGG------------------------------------	1	miR-327
		len	cloning frequencies
			T3S1	T4S1
	--------------------------------------------------------GAGGATGTTCCCCAACTCTG--------------------	20	-	1
	----------------------------------------------------CCTTGAGGATGTTCCCCAACTCT---------------------	23	1	-
rat	aaggctcctgcttgtaaggcctagtcttagaaggcacatctcaaacctacctCCTTGAGGATGTTCCCCAACTCTGcccacgactcaccaagcctt
	************************************************************************************************
	---------------------------------------------------------------------------------------------<<<<<<<<<<<<<	ENSRNOT00000041178 ENSRNOG00000031939 LOC680475
	---------------------------------------------------------------------------------------------<<<<<<<<<<<<<	ENSRNOT00000041659 ENSRNOG00000031939 LOC680475
	---------------------------------------------------------------------------------------------<<<<<<<<<<<<<	ENSRNOT00000043269 ENSRNOG00000031939 LOC680475
	---------------------------------------------------------------------------------------------<<<<<<<<<<<<<	ENSRNOT00000050026 ENSRNOG00000031939 LOC680475
rat	((((((..((.((((..(((..(((.......((.(((((((((..........))))).)))).))...)))..))).))))..))...))))))	0.460 -20.20

rat

chromosome:9:5882087:5882182:-1

novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH (12 loci)

block114419 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.075	no	no	0.45/0.45	22/22/1.00	0.0	0.0	1	0	1	0	4	-2	5arm_loop	13	nd	0.41	4	1	1	na	na

		reads	miRBase family seed
seed	-----CAUGUCC--------------------------------------------	1	novel
		len	cloning frequencies
			T1S2
	----CCATGTCCATTCTCAAGATCCA------------------------------	22	1
rat	ttcaCCATGTCCATTCTCAAGATCCAtgccagagagatctttgactcacgtgggaa
	********************************************************
	...........>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>	ENSRNOT00000047250 ENSRNOG00000031122
rat	.((.((((((....((..((((((...........)))))).))...)))))))).	0.910 -11.90

rat

chromosome:11:22931659:22931714:-1

Same_strand|Boundary_non-coding|ENSRNOT00000047250|ENSRNOG00000031122 ## ENSRNOG00000031122|protein_coding||

block842851 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.179	no	no	0.41/0.41	22/22/1.00	0.0	0.0	1	0	1	0	4	-4	5arm_loop	24	nd	0.45	5	1	1	na	na

		reads	miRBase family seed
seed	-----UUGUCUU------------------------------------------------	1	novel
		len	cloning frequencies
			T5S2
	----CTTGTCTTTCACTATGTAGCCA----------------------------------	22	1
rat	aggcCTTGTCTTTCACTATGTAGCCAtactttcagatacatttataaagacgttgaacct
	************************************************************
rat	(((...(((((((....(((((..............)))))....))))))).....)))	1.000 -9.44

rat

chromosome:1:48999645:48999704:-1

intergenic

block845406 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	3	-4	5arm_loop	31	nd	0.50	5	1	1	na	na

		reads	miRBase family seed
seed	----CCCCAUU----------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---TCCCCATTGGAATTGGTTCA----------------------	20	1
rat	attTCCCCATTGGAATTGGTTCAtcctttaatgcctctgggaaat
	*********************************************
rat	(((((((....((.(((((........))))).))...)))))))	1.000 -10.60

rat

chromosome:1:50685434:50685478:-1

intergenic

block845719 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	3	-4	5arm_loop	31	nd	0.50	5	1	1	na	na

		reads	miRBase family seed
seed	----CCCCAUU----------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---TCCCCATTGGAATTGGTTCA----------------------	20	1
rat	attTCCCCATTGGAATTGGTTCAtcctttaatgcctctgggaaat
	*********************************************
rat	(((((((....((.(((((........))))).))...)))))))	1.000 -10.60

rat

chromosome:1:50788815:50788859:-1

intergenic

block846045 [novel_Multihit_shortStem_loopOverlap_nonpairedHIGH_bulgeHIGH]

Hairpin parameters
miRNA	randfold	RNA	rep	GC min/max	len min/max/mir_range	5'var	3'var	reads	reads edited	libs	libs edited	base distance	loop distance	position	locations	exon distance	unpaired	max bulge	total reads	total libs	dicer	drosha
no	0.030	no	no	0.45/0.45	20/20/1.00	0.0	0.0	1	0	1	0	3	-4	5arm_loop	31	nd	0.50	5	1	1	na	na

		reads	miRBase family seed
seed	----CCCCAUU----------------------------------	1	novel
		len	cloning frequencies
			T5S1
	---TCCCCATTGGAATTGGTTCA----------------------	20	1
rat	attTCCCCATTGGAATTGGTTCAtcctttaatgcctctgggaaat
	*********************************************
rat	(((((((....((.(((((........))))).))...)))))))	1.000 -10.60