other hairpins
novel_cloningOK_bulgeHIGH (12 loci)
block1471000 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.523 | no | no | 0.56/0.60 | 18/20/0.90 | 0.0 | 0.0 | 39 | 0 | 10 | 0 | 10 | 1 | 3arm | 1 | nd | 0.30 | 4 | 48 | 10 | na | na |
| reads | miRBase family seed | |||||||||||
| seed | ----------------------------------------------CCAACAU---------------------- | 47 | novel | |||||||||
| seed | --------------------------------------------GUCCAAC------------------------ | 1 | novel | |||||||||
| len | cloning frequencies | |||||||||||
| T1S1 | T1S2 | T2S1 | T2S2 | T3S1 | T3S2 | T4S1 | T4S2 | T5S1 | T5S2 | |||
| ---------------------------------------------TCCAACATGGTCTTGGGCGG---------- | 20 | 3 | 5 | 8 | 4 | 2 | 1 | 8 | 4 | 7 | 1 | |
| ---------------------------------------------TCCAACATGGTCTTGGGC------------ | 18 | 1 | - | 1 | - | - | - | - | 1 | 1 | - | |
| -------------------------------------------CGTCCAACATGGTCTTGG-------------- | 18 | - | - | - | 1 | - | - | - | - | - | - | |
| rat | gcacacgctctgccgtttcctgactaacatgcaacactgaatccgTCCAACATGGTCTTGGGCGGctctgtggcc | |||||||||||
| *************************************************************************** | ||||||||||||
| ------------------------------------------------------------------------------------- | ENSRNOT00000012161 ENSRNOG00000008944 Ext2 | |||||||||||
| rat | ((.((((....(((((..((.(((...((((....((.......))....)))))))..)))))))..)))))). | 0.630 -18.20 | ||||||||||
| rat | chromosome:3:78227631:78227705:1 | Opposite_strand|Intronic_coding|ENSRNOT00000012161|ENSRNOG00000008944 ## ENSRNOG00000008944|protein_coding|Ext2|exostoses (multiple) 2 Gene [Source:MGI (curated);Acc:Ext2-001] |
block1696609 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.041 | no | no | 0.41/0.50 | 19/22/0.90 | 0.0 0.0 | 0.2 0.0 | 4 5 | 0 0 | 2 1 | 0 0 | 4 11 | 12 4 | 5arm 5arm | 1 1 | nd nd | 0.47 0.29 | 4 4 | 10 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------GAGCUUG--------------------------------------------------------- | 5 | novel | |
| seed | -----GACCCUU---------------------------------------------------------------- | 4 | novel | |
| seed | -----------UGAGCUU---------------------------------------------------------- | 1 | novel | |
| len | cloning frequencies | |||
| T1S1 | T5S1 | |||
| -----------TGAGCTTGGTATGCTTATCAG-------------------------------------------- | 21 | - | 5 | |
| ----TGACCCTTGAGCTTGGTATG---------------------------------------------------- | 20 | 1 | 2 | |
| ----------TTGAGCTTGGTATGCTTATCAG-------------------------------------------- | 22 | - | 1 | |
| ----TGACCCTTGAGCTTGGTAT----------------------------------------------------- | 19 | 1 | - | |
| rat | aggcTGACCCTTGAGCTTGGTATGCTTATCAGcctgggttcaggattgataaaaacagccacgcccattcagatct | |||
| **************************************************************************** | ||||
| rat | (((((((....((.((.((((....(((((((((((....)))).))))))).....)))).)).)).)))).))) | 0.720 -22.30 | ||
| rat | chromosome:4:164282541:164282616:1 | intergenic |
block2127424 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.144 | no | no | 0.48/0.53 | 19/21/0.87 | 0.0 | 0.0 | 12 | 0 | 3 | 0 | 20 | 12 | 5arm | 3 | nd | 0.30 | 4 | 15 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | ---------------------CCCAGUG------------------------------------------------------------------------------------ | 14 | novel | ||
| seed | --------------------UCCCAGU------------------------------------------------------------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T2S1 | T5S1 | |||
| --------------------TCCCAGTGTGACCACATTGA------------------------------------------------------------------------ | 20 | - | - | 12 | |
| --------------------TCCCAGTGTGACCACATTG------------------------------------------------------------------------- | 19 | - | 1 | 1 | |
| -------------------TTCCCAGTGTGACCACATTGA------------------------------------------------------------------------ | 21 | 1 | - | - | |
| rat | actgggatcactagacctctTCCCAGTGTGACCACATTGAttttcacctgcctctcgggttggcggtggggatgggtagctgagctgggcatgtgaggctgctctaccccag | ||||
| **************************************************************************************************************** | |||||
| rat | .(((((.....(((.((((..((((((((.(((.((....((..((((.(((.........)))))))..))))))).))...)))))).....)))))))......))))) | 0.770 -41.20 | |||
| rat | chromosome:7:73698556:73698667:-1 | intergenic |
block2140726 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.489 | no | no | 0.32/0.47 | 19/22/0.90 | 0.0 0.5 0.0 | 0.0 0.7 0.0 | 1 6 3 | 0 0 0 | 1 2 2 | 0 0 0 | 21 10 1 | 12 17 30 | 3arm 3arm 3arm | 1 1 1 | nd nd nd | 0.21 0.50 0.52 | 4 7 7 | 10 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -------------------------------------------------------------------------------CAGAGCC------------------------ | 5 | novel | ||
| seed | -----------------------------------------------------------------------------------------AAAAACA-------------- | 3 | novel | ||
| seed | ----------------------------------------------------------------------------CCUCAGA--------------------------- | 1 | novel | ||
| seed | -----------------------------------------------------------------------GGAAUCC-------------------------------- | 1 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T1S2 | T5S1 | |||
| ------------------------------------------------------------------------------TCAGAGCCTTTAAAAACATTTG---------- | 22 | 3 | - | 2 | |
| ----------------------------------------------------------------------------------------TAAAAACATTTGCTTCCAGTC- | 21 | - | 1 | 2 | |
| ---------------------------------------------------------------------------TCCTCAGAGCCTTTAAAAACA-------------- | 21 | - | - | 1 | |
| ----------------------------------------------------------------------AGGAATCCTCAGAGCCTTT--------------------- | 19 | - | - | 1 | |
| rat | ggagcacaggcagctctctaaaggtcaagtgatttctcaggtcagactcatggttagtgtcctggacaatAGGAATCCTCAGAGCCTTTAAAAACATTTGCTTCCAGTCc | ||||
| ************************************************************************************************************** | |||||
| rat | (((....((((((.....(((((((..((.(((((((...(((.(((...........)))...)))...)))))))))....))))))).......))))))....))) | 0.400 -24.60 | |||
| rat | chromosome:7:96052873:96052982:-1 | intergenic |
block2325194 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.684 | no | no | 0.39/0.56 | 18/24/0.71 | 0.0 0.0 | 1.0 0.5 | 8 2 | 0 0 | 2 1 | 0 0 | 17 25 | 11 8 | 5arm 5arm | 1 1 | nd nd | 0.50 0.26 | 7 4 | 14 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | ------------------GGAAUCA------------------------------------------------------------------------------- | 10 | novel | |
| seed | --------------------------GGAUGUU----------------------------------------------------------------------- | 2 | novel | |
| seed | -----------------UGGAAUC-------------------------------------------------------------------------------- | 1 | novel | |
| seed | -------------------GAAUCAU------------------------------------------------------------------------------ | 1 | novel | |
| len | cloning frequencies | |||
| T1S2 | T5S1 | |||
| -----------------TGGAATCATGGATGTTGCCCTG----------------------------------------------------------------- | 22 | 1 | 4 | |
| -----------------TGGAATCATGGATGTTGCCC------------------------------------------------------------------- | 20 | - | 2 | |
| -----------------TGGAATCATGGATGTTGCCCTGGA--------------------------------------------------------------- | 24 | - | 2 | |
| -----------------TGGAATCATGGATGTTGCCCT------------------------------------------------------------------ | 21 | - | 1 | |
| ----------------TTGGAATCATGGATGTTG---------------------------------------------------------------------- | 18 | - | 1 | |
| ------------------GGAATCATGGATGTTGCCC------------------------------------------------------------------- | 19 | - | 1 | |
| -------------------------TGGATGTTGCCCTGGATC------------------------------------------------------------- | 18 | - | 1 | |
| -------------------------TGGATGTTGCCCTGGATCT------------------------------------------------------------ | 19 | - | 1 | |
| rat | ccctttgtgttggacctTGGAATCATGGATGTTGCCCTGGAtctgggtgtgagactgtcgataggctggagttgggggagtcctaaaacaagactagacattgg | |||
| ******************************************************************************************************** | ||||
| rat | .((..(((.((((..((((.......((((....((((.(((((((...(((.....))).....))))).)).)))).)))).....)))).)))))))..)) | 0.570 -24.80 | ||
| rat | chromosome:8:72077003:72077106:-1 | intergenic |
block997710 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.014 | no | no | 0.38/0.42 | 19/23/0.83 | 0.0 | 0.7 | 9 | 0 | 3 | 0 | 16 | 18 | 5arm | 1 | nd | 0.30 | 4 | 12 | 3 | na | na |
| reads | miRBase family seed | ||||
| seed | -----------------CCUUAAC--------------------------------------------------------------------------------------------- | 12 | novel | ||
| len | cloning frequencies | ||||
| T1S1 | T5S1 | T5S2 | |||
| ----------------CCCTTAACCAGATAAACTGTT-------------------------------------------------------------------------------- | 21 | - | 6 | - | |
| ----------------CCCTTAACCAGATAAACTGTTGA------------------------------------------------------------------------------ | 23 | 1 | 3 | - | |
| ----------------CCCTTAACCAGATAAACTG---------------------------------------------------------------------------------- | 19 | - | 1 | 1 | |
| rat | actgagaaggaaccttCCCTTAACCAGATAAACTGTTGAttgttgactctgtctgccgcacaaggtttgggtttttgggtttttgttttttggtttttgggagttttttttttttgt | ||||
| ********************************************************************************************************************* | |||||
| rat | ((.(((((((((..(((((..(((((((.((((....((((...(((((.....(((......)))..)))))....))))...)))))))))))...)))))..))))))))).)) | 1.000 -29.80 | |||
| rat | chromosome:1:128266809:128266925:1 | intergenic |
block648460 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.013 | no | no | 0.38/0.40 | 20/21/1.00 | 0.5 | 0.0 | 12 | 0 | 2 | 0 | 6 | 6 | 5arm | 1 | nd | 0.30 | 4 | 13 | 2 | na | na |
| reads | miRBase family seed | |||
| seed | --------ACAAACA---------------------------------------------------- | 7 | novel | |
| seed | -------UACAAAC----------------------------------------------------- | 6 | novel | |
| len | cloning frequencies | |||
| T2S1 | T5S1 | |||
| -------TACAAACATACCTGTACCAG---------------------------------------- | 20 | 1 | 6 | |
| ------TTACAAACATACCTGTACCAG---------------------------------------- | 21 | - | 6 | |
| rat | caccacTTACAAACATACCTGTACCAGcattcagacatagaaatgaatgtatatgtgtgtttgcggt | |||
| ******************************************************************* | ||||
| rat | .(((.....(((((((((.(((....(((((((..........)))))))))).))))))))).))) | 1.000 -16.50 | ||
| rat | chromosome:17:20759802:20759868:1 | intergenic |
block648686 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.513 | no | no | 0.50/0.54 | 19/24/0.96 | 0.9 | 0.0 | 19 | 0 | 4 | 0 | 24 | 7 | 3arm | 1 | nd | 0.30 | 4 | 26 | 4 | na | na |
| reads | miRBase family seed | |||||
| seed | ------------------------------------------------------------------------CUCUCAC--------------------------------------- | 14 | novel | |||
| seed | --------------------------------------------------------------------------CUCACUG------------------------------------- | 11 | novel | |||
| seed | -----------------------------------------------------------------------UCUCUCA---------------------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S2 | T4S1 | T5S1 | T5S2 | |||
| -----------------------------------------------------------------------TCTCTCACTGTGCGTGTTCTGTC------------------------ | 23 | 1 | 1 | 9 | 1 | |
| -------------------------------------------------------------------------TCTCACTGTGCGTGTTCTGTC------------------------ | 21 | - | - | 10 | - | |
| -------------------------------------------------------------------------TCTCACTGTGCGTGTTCTG-------------------------- | 19 | - | - | 1 | - | |
| -----------------------------------------------------------------------TCTCTCACTGTGCGTGTTCTG-------------------------- | 21 | 1 | - | - | - | |
| -----------------------------------------------------------------------TCTCTCACTGTGCGTGTTCTGTCC----------------------- | 24 | - | - | 1 | - | |
| ----------------------------------------------------------------------TTCTCTCACTGTGCGTGTTCTGTC------------------------ | 24 | - | - | 1 | - | |
| rat | cccagctgctcagtgatgatcgtagtgacgggggacaagctgatggagactgcgcccgtggagtgctcagtTCTCTCACTGTGCGTGTTCTGTCctaagtgtactggagatgcttggg | |||||
| ********************************************************************************************************************** | ||||||
| rat | ((((((..(((((((.......(((.(((((((.((..((....((((((((.((.........)).)))).))))....))..)).))))))))))....))))).))..))).))) | 0.950 -37.70 | ||||
| rat | chromosome:17:20780823:20780940:1 | intergenic |
block1060423 [novel_cloningOK_bulgeHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.214 | no | no | 0.50/0.55 | 20/22/1.00 | 0.0 | 0.0 | 21 | 0 | 5 | 0 | 11 | 14 | 5arm | 1 | nd | 0.29 | 4 | 31 | 5 | na | na |
| reads | miRBase family seed | ||||||
| seed | ------------CCUAUGU--------------------------------------------------------------------------- | 24 | novel | ||||
| seed | -----------UCCUAUG---------------------------------------------------------------------------- | 3 | novel | ||||
| seed | -----------------GUUGCGU---------------------------------------------------------------------- | 2 | novel | ||||
| seed | -------------CUAUGUU-------------------------------------------------------------------------- | 1 | novel | ||||
| seed | --------------------GCGUUCU------------------------------------------------------------------- | 1 | novel | ||||
| len | cloning frequencies | ||||||
| T1S1 | T1S2 | T4S1 | T4S2 | T5S1 | |||
| -----------TCCTATGTTGCGTTCTCGGAG-------------------------------------------------------------- | 21 | 1 | - | 1 | 1 | 21 | |
| ----------TTCCTATGTTGCGTTCTCGGAG-------------------------------------------------------------- | 22 | - | 1 | - | - | 2 | |
| -------------------TGCGTTCTCGGAGCTTGAGA------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ------------CCTATGTTGCGTTCTCGGAG-------------------------------------------------------------- | 20 | - | - | - | - | 1 | |
| ----------------TGTTGCGTTCTCGGAGCTTGAG-------------------------------------------------------- | 22 | - | - | - | - | 1 | |
| ----------------TGTTGCGTTCTCGGAGCTTGA--------------------------------------------------------- | 21 | - | 1 | - | - | - | |
| rat | agtctgggcttTCCTATGTTGCGTTCTCGGAGcttgagatgtcgtcaatgatgacagggattgaagagggagaagtggctgggtgaccttgtct | ||||||
| ********************************************************************************************** | |||||||
| rat | ((...(((.((.((((.(((((.(((((....(((.((.(((((((...)))))))....)).)))...)))))))))))))).)))))...)) | 0.630 -25.30 | |||||
| rat | chromosome:20:5504497:5504590:-1 | intergenic |
novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH (12 loci)
block1577944 [novel_cloningOK_multiarm_DicerNOK_5varHIGH_loopOverlap_nonpairedHIGH]
| miRNA | randfold | RNA | rep | GC min/max | len min/max/mir_range | 5'var | 3'var | reads | reads edited | libs | libs edited | base distance | loop distance | position | locations | exon distance | unpaired | max bulge | total reads | total libs | dicer | drosha |
| no | 0.141 | no | no | 0.37/0.68 | 19/24/0.79 | 1.3 0.8 | 2.5 0.8 | 19 5 | 0 0 | 4 2 | 0 0 | 11 8 | -15 -5 | 5arm_loop_3arm 3arm_loop | 1 1 | nd nd | 0.37 0.36 | 4 2 | 34 | 4 | 0 | 2 |
| reads | miRBase family seed | |||||
| seed | --------------------GCUUGGA--------------------------------- | 18 | novel | |||
| seed | ------------GGAAGUG----------------------------------------- | 4 | novel | |||
| seed | -----------------------UGGACUA------------------------------ | 3 | novel | |||
| seed | -------------------------------AUUCCGG---------------------- | 3 | novel | |||
| seed | -----------------------------AUAUUCC------------------------ | 2 | novel | |||
| seed | ----------------GUGUGCU------------------------------------- | 1 | novel | |||
| seed | -----------GGGAAGU------------------------------------------ | 1 | novel | |||
| seed | ------------------GUGCUUG----------------------------------- | 1 | novel | |||
| seed | ------------------------GGACUAU----------------------------- | 1 | novel | |||
| len | cloning frequencies | |||||
| T1S1 | T1S2 | T2S1 | T5S1 | |||
| -------------------TGCTTGGACTATATTCCGGACAC------------------ | 23 | 2 | - | - | 10 | |
| -------------------TGCTTGGACTATATTCCGGAC-------------------- | 21 | - | - | - | 6 | |
| ----------------------TTGGACTATATTCCGGACAC------------------ | 20 | - | 1 | 1 | 1 | |
| ------------------------------TATTCCGGACACGCCTCCGGGG-------- | 22 | 1 | - | - | 2 | |
| -----------GGGAAGTGTGCTTGGACTA------------------------------ | 19 | - | - | - | 3 | |
| ---------------AGTGTGCTTGGACTATATT-------------------------- | 19 | - | - | - | 1 | |
| -----------------TGTGCTTGGACTATATTCC------------------------ | 19 | - | - | - | 1 | |
| -----------------------TGGACTATATTCCGGACAC------------------ | 19 | - | - | - | 1 | |
| ----------------------------TATATTCCGGACACGCCTCC------------ | 20 | - | - | - | 1 | |
| ----------TGGGAAGTGTGCTTGGACT------------------------------- | 19 | - | - | - | 1 | |
| ----------------------------TATATTCCGGACACGCCTCCGGGG-------- | 24 | - | - | - | 1 | |
| -----------GGGAAGTGTGCTTGGACTAT----------------------------- | 20 | - | - | - | 1 | |
| rat | gagcaggagctGGGAAGTGTGCTTGGACTATATTCCGGACACgcctccggggcccacctc | |||||
| ************************************************************ | ||||||
| rat | (((..((..((.(((.(((((..((((......))))..))))).))).))..))..))) | 1.000 -22.70 | ||||
| rat | chromosome:4:122192731:122192790:-1 | intergenic |
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